Wall clock time and date at job start Mon Mar 30 2020 03:22:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46906 * 1
3 3 C 1.46898 * 110.99961 * 2 1
4 4 C 1.53006 * 109.47006 * 84.99970 * 3 2 1
5 5 C 1.52997 * 109.47127 * 179.97438 * 4 3 2
6 6 C 1.53000 * 109.47060 * 300.00449 * 5 4 3
7 7 N 1.46901 * 109.46769 * 180.02562 * 6 5 4
8 8 C 1.46900 * 111.00162 * 298.94852 * 7 6 5
9 9 C 1.46901 * 110.99952 * 174.99823 * 7 6 5
10 10 C 1.50694 * 109.47447 * 189.99860 * 9 7 6
11 11 H 1.08003 * 120.00064 * 359.97438 * 10 9 7
12 12 C 1.37877 * 120.00264 * 180.02562 * 10 9 7
13 13 N 1.31522 * 119.99918 * 180.02562 * 12 10 9
14 14 Si 1.86798 * 120.00092 * 359.97438 * 12 10 9
15 15 H 1.48500 * 109.46836 * 90.00062 * 14 12 10
16 16 H 1.48502 * 109.47076 * 210.00287 * 14 12 10
17 17 H 1.48500 * 109.46834 * 330.00003 * 14 12 10
18 18 C 1.52996 * 109.47328 * 60.00126 * 6 5 4
19 19 C 1.52997 * 109.47123 * 204.99951 * 3 2 1
20 20 H 1.09001 * 109.46911 * 180.02562 * 1 2 3
21 21 H 1.08996 * 109.46971 * 299.99790 * 1 2 3
22 22 H 1.08994 * 109.47376 * 59.99710 * 1 2 3
23 23 H 1.00893 * 110.99825 * 123.95672 * 2 1 3
24 24 H 1.09001 * 109.47062 * 325.00224 * 3 2 1
25 25 H 1.08998 * 109.46505 * 59.99663 * 4 3 2
26 26 H 1.08996 * 109.46884 * 300.00544 * 4 3 2
27 27 H 1.09002 * 109.47153 * 180.02562 * 5 4 3
28 28 H 1.09001 * 109.46832 * 60.00321 * 5 4 3
29 29 H 1.09001 * 109.47194 * 299.99650 * 6 5 4
30 30 H 1.09003 * 109.46730 * 60.00275 * 8 7 6
31 31 H 1.08993 * 109.47223 * 180.02562 * 8 7 6
32 32 H 1.08999 * 109.47337 * 300.00741 * 8 7 6
33 33 H 1.09000 * 109.47406 * 309.99923 * 9 7 6
34 34 H 1.09001 * 109.47083 * 69.99877 * 9 7 6
35 35 H 0.96997 * 119.99488 * 179.97438 * 13 12 10
36 36 H 1.08992 * 109.47554 * 59.99639 * 18 6 5
37 37 H 1.09004 * 109.47108 * 179.97438 * 18 6 5
38 38 H 1.09002 * 109.47045 * 60.00157 * 19 3 2
39 39 H 1.09001 * 109.47375 * 300.00082 * 19 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4691 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 2.0609 1.8926 1.4371
5 6 2.6097 3.3207 1.4372
6 6 4.0131 3.3278 0.8277
7 7 4.5403 4.6989 0.8283
8 6 3.6944 5.5886 0.0216
9 6 5.9321 4.7280 0.3595
10 6 6.5159 6.0958 0.6030
11 1 5.9130 6.8666 1.0600
12 6 7.8192 6.3635 0.2415
13 7 8.3287 7.5572 0.4546
14 14 8.8617 5.0306 -0.5496
15 1 8.7024 5.0881 -2.0249
16 1 10.2884 5.2435 -0.1969
17 1 8.4229 3.7007 -0.0557
18 6 3.9476 2.8067 -0.6093
19 6 3.3987 1.3790 -0.6096
20 1 -0.3633 -1.0277 0.0005
21 1 -0.3633 0.5138 0.8900
22 1 -0.3634 0.5138 -0.8899
23 1 1.8306 -0.5261 0.7813
24 1 1.3398 2.0123 -0.5894
25 1 2.7165 1.2516 2.0264
26 1 1.0612 1.8870 1.8714
27 1 2.6567 3.6918 2.4610
28 1 1.9543 3.9618 0.8476
29 1 4.6685 2.6866 1.4172
30 1 2.6851 5.6020 0.4331
31 1 4.1076 6.5970 0.0388
32 1 3.6629 5.2267 -1.0061
33 1 6.5140 3.9828 0.9020
34 1 5.9609 4.5054 -0.7072
35 1 9.2457 7.7454 0.2005
36 1 3.2923 3.4477 -1.1988
37 1 4.9474 2.8121 -1.0437
38 1 3.3521 1.0078 -1.6334
39 1 4.0545 0.7382 -0.0202
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000085873539.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:22:53
Heat of formation + Delta-G solvation = -27.887915 kcal
Electronic energy + Delta-G solvation = -16459.447315 eV
Core-core repulsion = 14014.387459 eV
Total energy + Delta-G solvation = -2445.059855 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.60038 -37.89477 -35.15393 -34.05289 -31.79723 -30.30475 -28.99117 -26.80591
-25.21785 -23.77649 -22.93179 -21.57575 -20.33252 -19.02306 -17.10000 -16.66780
-16.37555 -15.83194 -15.57272 -15.32566 -15.00303 -14.60057 -14.42713 -14.27776
-13.85521 -13.38639 -13.17417 -13.03774 -12.89960 -12.71877 -12.57097 -12.28212
-12.05490 -11.90531 -11.74032 -11.68957 -11.45447 -11.30454 -11.03835 -10.78048
-9.30140 -8.90344 -8.28919 -6.31735 1.32876 1.34737 1.45719 2.33532
3.03880 3.16326 3.42213 3.72174 3.84512 4.11857 4.26881 4.30136
4.40502 4.47743 4.54623 4.56635 4.59020 4.69993 4.71217 4.81312
4.89099 4.90870 5.03603 5.05610 5.07736 5.17599 5.19527 5.23173
5.24905 5.45411 5.47237 5.56420 6.02015 6.10761 6.41077 6.51296
6.69847 6.75128 7.32003 8.87877
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.048415 B = 0.006148 C = 0.005716
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 578.189969 B = 4553.234020 C = 4896.974530
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 N -0.699 5.699
3 C 0.093 3.907
4 C -0.134 4.134
5 C -0.099 4.099
6 C 0.081 3.919
7 N -0.543 5.543
8 C 0.037 3.963
9 C 0.174 3.826
10 C -0.517 4.517
11 H 0.037 0.963
12 C 0.009 3.991
13 N -0.948 5.948
14 Si 0.945 3.055
15 H -0.267 1.267
16 H -0.280 1.280
17 H -0.251 1.251
18 C -0.148 4.148
19 C -0.093 4.093
20 H 0.077 0.923
21 H 0.027 0.973
22 H 0.060 0.940
23 H 0.347 0.653
24 H 0.072 0.928
25 H 0.067 0.933
26 H 0.073 0.927
27 H 0.062 0.938
28 H 0.065 0.935
29 H 0.067 0.933
30 H 0.078 0.922
31 H 0.043 0.957
32 H 0.024 0.976
33 H 0.023 0.977
34 H -0.012 1.012
35 H 0.267 0.733
36 H 0.063 0.937
37 H 0.045 0.955
38 H 0.065 0.935
39 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.746 -16.096 -1.222 21.864
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 N -0.328 5.328
3 C -0.017 4.017
4 C -0.174 4.174
5 C -0.138 4.138
6 C -0.027 4.027
7 N -0.266 5.266
8 C -0.111 4.111
9 C 0.047 3.953
10 C -0.555 4.555
11 H 0.056 0.944
12 C -0.189 4.189
13 N -0.589 5.589
14 Si 0.768 3.232
15 H -0.193 1.193
16 H -0.205 1.205
17 H -0.174 1.174
18 C -0.188 4.188
19 C -0.131 4.131
20 H 0.096 0.904
21 H 0.046 0.954
22 H 0.079 0.921
23 H 0.165 0.835
24 H 0.090 0.910
25 H 0.086 0.914
26 H 0.092 0.908
27 H 0.081 0.919
28 H 0.083 0.917
29 H 0.085 0.915
30 H 0.097 0.903
31 H 0.062 0.938
32 H 0.042 0.958
33 H 0.041 0.959
34 H 0.006 0.994
35 H 0.076 0.924
36 H 0.082 0.918
37 H 0.064 0.936
38 H 0.084 0.916
39 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -14.567 -15.900 -1.435 21.612
hybrid contribution 0.793 0.240 -0.181 0.848
sum -13.775 -15.660 -1.616 20.919
Atomic orbital electron populations
1.22244 0.87070 1.02450 1.00481 1.60513 1.08558 1.13390 1.50373
1.21525 0.95762 0.89298 0.95091 1.22144 1.01346 0.96160 0.97710
1.21449 0.94207 0.97116 1.00980 1.21834 0.96819 0.88825 0.95236
1.62079 1.02405 1.08151 1.53957 1.22241 0.97117 0.96880 0.94869
1.19885 0.87021 0.95583 0.92803 1.21315 0.97583 0.97255 1.39365
0.94438 1.25827 0.99091 0.97741 0.96196 1.70052 1.15923 1.23066
1.49888 0.85748 0.77915 0.80276 0.79230 1.19259 1.20534 1.17442
1.22152 1.00544 0.97822 0.98255 1.21331 0.95749 0.94767 1.01282
0.90443 0.95440 0.92129 0.83482 0.90960 0.91388 0.90844 0.91890
0.91665 0.91493 0.90312 0.93823 0.95770 0.95887 0.99422 0.92436
0.91794 0.93576 0.91635 0.91992
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.38 10.50 127.69 1.34 1.72 16
2 N -0.70 -12.14 6.60 -514.61 -3.40 -15.54 16
3 C 0.09 1.86 2.47 44.92 0.11 1.97 16
4 C -0.13 -2.64 5.17 30.60 0.16 -2.48 16
5 C -0.10 -2.54 5.00 30.59 0.15 -2.39 16
6 C 0.08 2.63 2.22 44.91 0.10 2.73 16
7 N -0.54 -22.66 4.74 -901.63 -4.27 -26.94 16
8 C 0.04 1.42 8.63 127.69 1.10 2.52 16
9 C 0.17 8.53 3.23 85.55 0.28 8.81 16
10 C -0.52 -30.54 9.01 25.60 0.23 -30.31 16
11 H 0.04 2.47 7.37 -2.91 -0.02 2.44 16
12 C 0.01 0.51 5.47 84.65 0.46 0.97 16
13 N -0.95 -60.14 13.96 21.45 0.30 -59.84 16
14 Si 0.94 44.84 27.47 68.60 1.88 46.72 16
15 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16
16 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16
17 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16
18 C -0.15 -4.36 4.51 30.58 0.14 -4.22 16
19 C -0.09 -2.17 5.53 30.58 0.17 -2.00 16
20 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16
21 H 0.03 0.36 7.44 -2.39 -0.02 0.34 16
22 H 0.06 0.89 8.05 -2.39 -0.02 0.87 16
23 H 0.35 5.27 8.56 -89.70 -0.77 4.50 16
24 H 0.07 1.51 7.80 -2.39 -0.02 1.49 16
25 H 0.07 1.31 8.13 -2.39 -0.02 1.29 16
26 H 0.07 1.25 7.45 -2.39 -0.02 1.23 16
27 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16
28 H 0.06 1.63 6.43 -2.39 -0.02 1.62 16
29 H 0.07 2.25 8.03 -2.39 -0.02 2.23 16
30 H 0.08 2.52 6.33 -2.39 -0.02 2.50 16
31 H 0.04 1.95 6.76 -2.39 -0.02 1.93 16
32 H 0.02 0.87 6.28 -2.39 -0.02 0.86 16
33 H 0.02 1.14 7.06 -2.39 -0.02 1.12 16
34 H -0.01 -0.57 6.36 -2.39 -0.02 -0.59 16
35 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16
36 H 0.06 1.87 6.39 -2.39 -0.02 1.85 16
37 H 0.05 1.54 6.75 -2.38 -0.02 1.52 16
38 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16
39 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16
Total: -1.00 -65.76 291.33 -1.06 -66.82
By element:
Atomic # 1 Polarization: 11.26 SS G_CDS: 0.19 Total: 11.45 kcal
Atomic # 6 Polarization: -26.91 SS G_CDS: 4.24 Total: -22.67 kcal
Atomic # 7 Polarization: -94.95 SS G_CDS: -7.37 Total: -102.32 kcal
Atomic # 14 Polarization: 44.84 SS G_CDS: 1.88 Total: 46.72 kcal
Total: -65.76 -1.06 -66.82 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000085873539.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.928 kcal
(2) G-P(sol) polarization free energy of solvation -65.759 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.831 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.057 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.816 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.888 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds