Wall clock time and date at job start Mon Mar 30 2020 03:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.46729 * 2 1 4 4 C 1.46901 * 111.00293 * 65.72040 * 3 2 1 5 5 C 1.50690 * 109.47179 * 66.04178 * 4 3 2 6 6 H 1.08002 * 120.00240 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00058 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00251 * 179.97438 * 7 5 4 9 9 Si 1.86808 * 119.99880 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.46753 * 269.99915 * 9 7 5 11 11 H 1.48498 * 109.47085 * 29.99585 * 9 7 5 12 12 H 1.48490 * 109.47320 * 150.00058 * 9 7 5 13 13 C 1.46901 * 111.00145 * 301.76139 * 3 2 1 14 14 H 1.08995 * 109.47109 * 67.70561 * 13 3 2 15 15 C 1.52997 * 109.47311 * 187.70712 * 13 3 2 16 16 C 1.52997 * 109.47280 * 179.97438 * 15 13 3 17 17 C 1.53002 * 109.47026 * 299.99593 * 16 15 13 18 18 C 1.52997 * 109.46758 * 60.00087 * 17 16 15 19 19 H 1.09004 * 109.46847 * 179.97438 * 18 17 16 20 20 N 1.46900 * 109.47254 * 60.00075 * 18 17 16 21 21 C 1.52997 * 109.47280 * 299.99757 * 18 17 16 22 22 H 1.09005 * 109.46882 * 180.23584 * 1 2 3 23 23 H 1.08993 * 109.47486 * 300.23841 * 1 2 3 24 24 H 1.09009 * 109.46959 * 60.24095 * 1 2 3 25 25 H 1.09000 * 109.47412 * 240.00041 * 2 1 3 26 26 H 1.08998 * 109.46881 * 119.99824 * 2 1 3 27 27 H 1.08999 * 109.46735 * 306.04125 * 4 3 2 28 28 H 1.08997 * 109.47159 * 186.04425 * 4 3 2 29 29 H 0.97001 * 120.00196 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.46847 * 300.00103 * 15 13 3 31 31 H 1.09002 * 109.47544 * 59.99817 * 15 13 3 32 32 H 1.08995 * 109.47083 * 59.99883 * 16 15 13 33 33 H 1.09007 * 109.47215 * 179.97438 * 16 15 13 34 34 H 1.09006 * 109.46849 * 179.97438 * 17 16 15 35 35 H 1.09002 * 109.47184 * 299.99756 * 17 16 15 36 36 H 1.00901 * 111.00013 * 59.99845 * 20 18 17 37 37 H 1.00896 * 111.00033 * 183.94911 * 20 18 17 38 38 H 1.09002 * 109.46940 * 300.00502 * 21 18 17 39 39 H 1.08994 * 109.46946 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6634 2.0693 1.2501 5 6 2.3977 1.4295 2.3999 6 1 3.0629 0.5979 2.2200 7 6 2.2204 1.9057 3.6816 8 7 2.8609 1.3470 4.6852 9 14 1.0693 3.3436 3.9929 10 1 1.8282 4.6160 3.8913 11 1 -0.0189 3.3343 2.9825 12 1 0.4838 3.2237 5.3522 13 6 1.5144 2.1220 -1.1661 14 1 0.4366 2.2550 -1.0727 15 6 2.1931 3.4913 -1.2372 16 6 1.6674 4.2586 -2.4520 17 6 1.9761 3.4698 -3.7261 18 6 1.2974 2.1004 -3.6550 19 1 1.5169 1.5385 -4.5629 20 7 -0.1552 2.2797 -3.5299 21 6 1.8231 1.3331 -2.4402 22 1 -0.3633 -1.0277 0.0042 23 1 -0.3634 0.5175 0.8878 24 1 -0.3633 0.5101 -0.8922 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.5890 1.9885 1.4151 28 1 1.9422 3.1208 1.1809 29 1 2.7365 1.6822 5.5869 30 1 1.9736 4.0532 -0.3292 31 1 3.2709 3.3583 -1.3305 32 1 0.5896 4.3917 -2.3591 33 1 2.1506 5.2345 -2.5023 34 1 1.6011 4.0162 -4.5915 35 1 3.0540 3.3368 -3.8189 36 1 -0.5267 2.7842 -4.3208 37 1 -0.6207 1.3918 -3.4164 38 1 2.9010 1.2001 -2.5330 39 1 1.3399 0.3574 -2.3898 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086432230.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:24 Heat of formation + Delta-G solvation = -6.751711 kcal Electronic energy + Delta-G solvation = -16957.336934 eV Core-core repulsion = 14513.193613 eV Total energy + Delta-G solvation = -2444.143321 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.25690 -36.29210 -32.71373 -32.46339 -29.89054 -29.58503 -27.95793 -26.19791 -23.22848 -21.90561 -21.48251 -19.39471 -18.45319 -16.78702 -15.81677 -15.61166 -14.76320 -14.64710 -14.31830 -13.86694 -13.59311 -13.18093 -12.55989 -12.39354 -12.23440 -11.96029 -11.63883 -11.53967 -11.39315 -11.14016 -10.86737 -10.61398 -10.50852 -10.33632 -9.99048 -9.90742 -9.69456 -9.52732 -9.10625 -8.56471 -8.47316 -7.12366 -5.98151 -3.93646 3.33247 3.40466 3.43916 4.48540 4.52227 4.74494 4.94174 5.05312 5.29531 5.37348 5.55025 5.64489 5.70816 5.75321 5.81019 5.84757 5.98000 6.04839 6.09148 6.17394 6.25855 6.30842 6.42884 6.55700 6.60873 6.62174 6.73415 6.89134 6.95869 7.09332 7.18095 7.21035 7.44773 7.74150 8.08281 8.25258 8.77715 9.11285 9.64902 11.15245 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.033737 B = 0.008199 C = 0.007463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.755163 B = 3414.189608 C = 3750.827180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.058 3.942 3 N -0.526 5.526 4 C 0.158 3.842 5 C -0.503 4.503 6 H 0.079 0.921 7 C 0.067 3.933 8 N -0.904 5.904 9 Si 0.871 3.129 10 H -0.276 1.276 11 H -0.267 1.267 12 H -0.287 1.287 13 C 0.092 3.908 14 H 0.048 0.952 15 C -0.111 4.111 16 C -0.109 4.109 17 C -0.109 4.109 18 C 0.093 3.907 19 H 0.028 0.972 20 N -0.840 5.840 21 C -0.107 4.107 22 H 0.046 0.954 23 H 0.060 0.940 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.084 0.916 27 H -0.009 1.009 28 H 0.025 0.975 29 H 0.262 0.738 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.335 0.665 37 H 0.338 0.662 38 H 0.070 0.930 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.052 2.127 -16.776 17.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.070 4.070 3 N -0.249 5.249 4 C 0.031 3.969 5 C -0.541 4.541 6 H 0.097 0.903 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.699 3.301 10 H -0.202 1.202 11 H -0.192 1.192 12 H -0.213 1.213 13 C -0.017 4.017 14 H 0.066 0.934 15 C -0.149 4.149 16 C -0.147 4.147 17 C -0.147 4.147 18 C -0.019 4.019 19 H 0.046 0.954 20 N -0.371 5.371 21 C -0.146 4.146 22 H 0.065 0.935 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.102 0.898 27 H 0.009 0.991 28 H 0.043 0.957 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.088 0.912 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.318 2.540 -15.938 16.707 hybrid contribution -1.537 0.214 -0.471 1.622 sum -5.855 2.753 -16.409 17.639 Atomic orbital electron populations 1.22405 0.99622 1.00847 1.01819 1.22021 0.91846 0.91464 1.01688 1.62198 1.58735 1.01565 1.02441 1.20218 0.94369 0.94686 0.87582 1.21077 1.26036 1.17510 0.89526 0.90287 1.24888 0.95711 0.96648 0.96149 1.69897 1.42952 1.41885 0.99587 0.86914 0.81990 0.83638 0.77581 1.20214 1.19199 1.21345 1.21399 0.97423 0.92926 0.89959 0.93397 1.21574 1.00339 0.95570 0.97380 1.21399 1.01795 0.97327 0.94162 1.21546 0.99846 0.95279 0.98068 1.21339 0.88070 0.96030 0.96454 0.95393 1.58697 1.03992 1.25636 1.48729 1.21699 1.01076 0.97993 0.93793 0.93529 0.92098 0.93190 0.92690 0.89811 0.99123 0.95679 0.92822 0.91897 0.91867 0.91155 0.93028 0.92920 0.91790 0.85336 0.84926 0.91163 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.31 9.07 37.16 0.34 -2.97 16 2 C 0.06 1.13 5.35 -3.83 -0.02 1.11 16 3 N -0.53 -11.11 4.57 -228.10 -1.04 -12.15 16 4 C 0.16 3.89 3.48 -4.98 -0.02 3.88 16 5 C -0.50 -14.50 8.99 -34.44 -0.31 -14.81 16 6 H 0.08 2.48 7.38 -52.49 -0.39 2.09 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -28.11 13.96 55.43 0.77 -27.34 16 9 Si 0.87 22.01 27.47 -169.99 -4.67 17.34 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.56 6.54 56.52 0.37 -6.19 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 C 0.09 1.60 1.15 -67.71 -0.08 1.52 16 14 H 0.05 0.89 6.19 -51.93 -0.32 0.57 16 15 C -0.11 -1.87 5.10 -26.73 -0.14 -2.01 16 16 C -0.11 -1.48 5.77 -26.73 -0.15 -1.63 16 17 C -0.11 -1.27 5.61 -26.73 -0.15 -1.42 16 18 C 0.09 1.08 3.57 -67.72 -0.24 0.84 16 19 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 20 N -0.84 -9.05 7.72 -4.67 -0.04 -9.08 16 21 C -0.11 -1.54 4.24 -26.73 -0.11 -1.65 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 1.22 6.41 -51.93 -0.33 0.89 16 24 H 0.05 0.80 6.15 -51.92 -0.32 0.48 16 25 H 0.05 0.94 6.31 -51.93 -0.33 0.61 16 26 H 0.08 1.85 6.72 -51.93 -0.35 1.50 16 27 H -0.01 -0.22 5.25 -51.93 -0.27 -0.50 16 28 H 0.03 0.63 5.41 -51.93 -0.28 0.35 16 29 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 30 H 0.06 1.18 6.29 -51.93 -0.33 0.85 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 1.00 7.60 -51.93 -0.39 0.60 16 33 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.33 2.95 9.04 -39.29 -0.36 2.59 16 37 H 0.34 3.40 8.99 -39.29 -0.35 3.05 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.85 5.91 -51.93 -0.31 0.54 16 LS Contribution 285.23 15.07 4.30 4.30 Total: -1.00 -30.48 285.23 -8.11 -38.59 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -6.45 Total: 3.61 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -0.98 Total: -15.28 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: -0.30 Total: -48.57 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.48 -8.11 -38.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086432230.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.841 kcal (2) G-P(sol) polarization free energy of solvation -30.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds