Wall clock time and date at job start Mon Mar 30 2020 03:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.46729 * 2 1 4 4 C 1.46901 * 111.00293 * 65.72040 * 3 2 1 5 5 C 1.50690 * 109.47179 * 66.04178 * 4 3 2 6 6 H 1.08002 * 120.00240 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00058 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00251 * 179.97438 * 7 5 4 9 9 Si 1.86808 * 119.99880 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.46753 * 269.99915 * 9 7 5 11 11 H 1.48498 * 109.47085 * 29.99585 * 9 7 5 12 12 H 1.48490 * 109.47320 * 150.00058 * 9 7 5 13 13 C 1.46901 * 111.00145 * 301.76139 * 3 2 1 14 14 H 1.08995 * 109.47109 * 67.70561 * 13 3 2 15 15 C 1.52997 * 109.47311 * 187.70712 * 13 3 2 16 16 C 1.52997 * 109.47280 * 179.97438 * 15 13 3 17 17 C 1.53002 * 109.47026 * 299.99593 * 16 15 13 18 18 C 1.52997 * 109.46758 * 60.00087 * 17 16 15 19 19 H 1.09004 * 109.46847 * 179.97438 * 18 17 16 20 20 N 1.46900 * 109.47254 * 60.00075 * 18 17 16 21 21 C 1.52997 * 109.47280 * 299.99757 * 18 17 16 22 22 H 1.09005 * 109.46882 * 180.23584 * 1 2 3 23 23 H 1.08993 * 109.47486 * 300.23841 * 1 2 3 24 24 H 1.09009 * 109.46959 * 60.24095 * 1 2 3 25 25 H 1.09000 * 109.47412 * 240.00041 * 2 1 3 26 26 H 1.08998 * 109.46881 * 119.99824 * 2 1 3 27 27 H 1.08999 * 109.46735 * 306.04125 * 4 3 2 28 28 H 1.08997 * 109.47159 * 186.04425 * 4 3 2 29 29 H 0.97001 * 120.00196 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.46847 * 300.00103 * 15 13 3 31 31 H 1.09002 * 109.47544 * 59.99817 * 15 13 3 32 32 H 1.08995 * 109.47083 * 59.99883 * 16 15 13 33 33 H 1.09007 * 109.47215 * 179.97438 * 16 15 13 34 34 H 1.09006 * 109.46849 * 179.97438 * 17 16 15 35 35 H 1.09002 * 109.47184 * 299.99756 * 17 16 15 36 36 H 1.00901 * 111.00013 * 59.99845 * 20 18 17 37 37 H 1.00896 * 111.00033 * 183.94911 * 20 18 17 38 38 H 1.09002 * 109.46940 * 300.00502 * 21 18 17 39 39 H 1.08994 * 109.46946 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6634 2.0693 1.2501 5 6 2.3977 1.4295 2.3999 6 1 3.0629 0.5979 2.2200 7 6 2.2204 1.9057 3.6816 8 7 2.8609 1.3470 4.6852 9 14 1.0693 3.3436 3.9929 10 1 1.8282 4.6160 3.8913 11 1 -0.0189 3.3343 2.9825 12 1 0.4838 3.2237 5.3522 13 6 1.5144 2.1220 -1.1661 14 1 0.4366 2.2550 -1.0727 15 6 2.1931 3.4913 -1.2372 16 6 1.6674 4.2586 -2.4520 17 6 1.9761 3.4698 -3.7261 18 6 1.2974 2.1004 -3.6550 19 1 1.5169 1.5385 -4.5629 20 7 -0.1552 2.2797 -3.5299 21 6 1.8231 1.3331 -2.4402 22 1 -0.3633 -1.0277 0.0042 23 1 -0.3634 0.5175 0.8878 24 1 -0.3633 0.5101 -0.8922 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.5890 1.9885 1.4151 28 1 1.9422 3.1208 1.1809 29 1 2.7365 1.6822 5.5869 30 1 1.9736 4.0532 -0.3292 31 1 3.2709 3.3583 -1.3305 32 1 0.5896 4.3917 -2.3591 33 1 2.1506 5.2345 -2.5023 34 1 1.6011 4.0162 -4.5915 35 1 3.0540 3.3368 -3.8189 36 1 -0.5267 2.7842 -4.3208 37 1 -0.6207 1.3918 -3.4164 38 1 2.9010 1.2001 -2.5330 39 1 1.3399 0.3574 -2.3898 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086432230.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:24 Heat of formation + Delta-G solvation = -29.374425 kcal Electronic energy + Delta-G solvation = -16958.317928 eV Core-core repulsion = 14513.193613 eV Total energy + Delta-G solvation = -2445.124315 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.55903 -37.68282 -34.69122 -33.77068 -31.32408 -31.15669 -29.12426 -27.92845 -24.82912 -23.45486 -22.77192 -20.76631 -19.76435 -18.93022 -17.10711 -16.70377 -16.48910 -16.07703 -15.72031 -15.36752 -14.91705 -14.58030 -14.30358 -14.00763 -13.66517 -13.41471 -13.08960 -12.86042 -12.74636 -12.61573 -12.45851 -12.24169 -11.98643 -11.87948 -11.57876 -11.48012 -11.31469 -11.07659 -10.80227 -10.70632 -9.38987 -8.80294 -8.27402 -6.28424 1.32195 1.33059 1.44339 2.33832 3.05945 3.28968 3.67923 3.87722 4.04007 4.15776 4.34691 4.39367 4.43846 4.52452 4.60289 4.61722 4.69186 4.77174 4.79240 4.86250 4.98501 5.07496 5.12137 5.17259 5.26820 5.31932 5.34245 5.38435 5.43377 5.51641 5.60534 5.69789 6.08888 6.38363 6.53058 6.74436 6.76367 6.82243 7.34709 8.89444 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.033737 B = 0.008199 C = 0.007463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.755163 B = 3414.189608 C = 3750.827180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.059 3.941 3 N -0.543 5.543 4 C 0.172 3.828 5 C -0.509 4.509 6 H 0.037 0.963 7 C 0.008 3.992 8 N -0.949 5.949 9 Si 0.941 3.059 10 H -0.266 1.266 11 H -0.255 1.255 12 H -0.280 1.280 13 C 0.095 3.905 14 H 0.042 0.958 15 C -0.113 4.113 16 C -0.101 4.101 17 C -0.107 4.107 18 C 0.099 3.901 19 H 0.049 0.951 20 N -0.849 5.849 21 C -0.103 4.103 22 H 0.069 0.931 23 H 0.031 0.969 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.045 0.955 27 H -0.013 1.013 28 H 0.023 0.977 29 H 0.266 0.734 30 H 0.037 0.963 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.348 0.652 37 H 0.343 0.657 38 H 0.063 0.937 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.556 3.175 -19.278 20.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.069 4.069 3 N -0.267 5.267 4 C 0.045 3.955 5 C -0.547 4.547 6 H 0.055 0.945 7 C -0.188 4.188 8 N -0.590 5.590 9 Si 0.764 3.236 10 H -0.191 1.191 11 H -0.179 1.179 12 H -0.206 1.206 13 C -0.013 4.013 14 H 0.060 0.940 15 C -0.151 4.151 16 C -0.139 4.139 17 C -0.145 4.145 18 C -0.013 4.013 19 H 0.067 0.933 20 N -0.381 5.381 21 C -0.141 4.141 22 H 0.088 0.912 23 H 0.050 0.950 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.064 0.936 27 H 0.004 0.996 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.162 0.838 37 H 0.156 0.844 38 H 0.082 0.918 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.829 3.584 -18.474 19.700 hybrid contribution -0.993 -0.196 0.286 1.052 sum -6.822 3.388 -18.188 19.718 Atomic orbital electron populations 1.22281 0.97833 1.02194 1.01248 1.21989 0.93317 0.90484 1.01140 1.62121 1.59776 1.02456 1.02298 1.19901 0.93173 0.94371 0.88046 1.21305 1.25528 1.16487 0.91427 0.94489 1.25784 0.97518 0.99749 0.95793 1.70046 1.44902 1.43869 1.00216 0.85808 0.79981 0.79906 0.77868 1.19061 1.17899 1.20558 1.21463 0.96804 0.93313 0.89711 0.94040 1.21593 0.99876 0.95513 0.98102 1.21328 1.01388 0.97650 0.93524 1.21552 1.00164 0.95174 0.97636 1.21239 0.88600 0.95831 0.95580 0.93327 1.58640 1.03490 1.26254 1.49743 1.21660 1.00951 0.98189 0.93299 0.91247 0.95006 0.91223 0.89911 0.93645 0.99590 0.95866 0.92543 0.94437 0.92843 0.91480 0.91973 0.90541 0.91626 0.83785 0.84360 0.91823 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.01 9.07 71.98 0.65 -5.36 16 2 C 0.06 2.28 5.35 86.30 0.46 2.74 16 3 N -0.54 -23.10 4.57 -875.56 -4.00 -27.10 16 4 C 0.17 8.64 3.48 85.55 0.30 8.94 16 5 C -0.51 -30.50 8.99 25.60 0.23 -30.27 16 6 H 0.04 2.46 7.38 -2.91 -0.02 2.44 16 7 C 0.01 0.51 5.47 84.66 0.46 0.97 16 8 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 9 Si 0.94 45.90 27.47 68.60 1.88 47.78 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.25 -11.84 6.54 99.48 0.65 -11.19 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 13 C 0.09 3.20 1.15 44.91 0.05 3.25 16 14 H 0.04 1.47 6.19 -2.39 -0.01 1.46 16 15 C -0.11 -3.72 5.10 30.59 0.16 -3.56 16 16 C -0.10 -2.49 5.77 30.59 0.18 -2.32 16 17 C -0.11 -2.11 5.61 30.59 0.17 -1.94 16 18 C 0.10 1.95 3.57 44.91 0.16 2.11 16 19 H 0.05 0.81 8.14 -2.38 -0.02 0.80 16 20 N -0.85 -15.20 7.72 -168.68 -1.30 -16.50 16 21 C -0.10 -2.70 4.24 30.59 0.13 -2.57 16 22 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 23 H 0.03 1.25 6.41 -2.39 -0.02 1.24 16 24 H 0.07 2.08 6.15 -2.38 -0.01 2.07 16 25 H 0.08 2.73 6.31 -2.39 -0.02 2.71 16 26 H 0.04 2.09 6.72 -2.39 -0.02 2.08 16 27 H -0.01 -0.68 5.25 -2.39 -0.01 -0.70 16 28 H 0.02 1.18 5.41 -2.39 -0.01 1.17 16 29 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 30 H 0.04 1.40 6.29 -2.38 -0.02 1.38 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 1.72 7.60 -2.39 -0.02 1.70 16 33 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.08 1.19 8.14 -2.38 -0.02 1.18 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.35 4.74 9.04 -89.69 -0.81 3.93 16 37 H 0.34 5.66 8.99 -89.70 -0.81 4.85 16 38 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 39 H 0.06 1.64 5.91 -2.39 -0.01 1.63 16 Total: -1.00 -67.85 285.23 -0.80 -68.65 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -0.63 Total: 15.75 kcal Atomic # 6 Polarization: -30.95 SS G_CDS: 2.95 Total: -28.00 kcal Atomic # 7 Polarization: -99.18 SS G_CDS: -5.00 Total: -104.18 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.88 Total: 47.78 kcal Total: -67.85 -0.80 -68.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086432230.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.276 kcal (2) G-P(sol) polarization free energy of solvation -67.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds