Wall clock time and date at job start Mon Mar 30 2020 03:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46909 * 110.99980 * 2 1 4 4 C 1.52998 * 109.47196 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47012 * 180.02562 * 4 3 2 6 6 N 1.46896 * 109.46907 * 180.02562 * 5 4 3 7 7 C 1.46898 * 111.00636 * 66.04315 * 6 5 4 8 8 C 1.46900 * 111.00169 * 190.00301 * 6 5 4 9 9 C 1.52992 * 109.47477 * 163.48196 * 8 6 5 10 10 C 1.50696 * 115.55145 * 305.55053 * 9 8 6 11 11 H 1.08000 * 120.00330 * 144.40837 * 10 9 8 12 12 C 1.37877 * 120.00146 * 324.41255 * 10 9 8 13 13 N 1.31512 * 119.99939 * 346.97080 * 12 10 9 14 14 Si 1.86804 * 120.00202 * 166.96517 * 12 10 9 15 15 H 1.48500 * 109.46565 * 60.00096 * 14 12 10 16 16 H 1.48496 * 109.46943 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47190 * 300.00613 * 14 12 10 18 18 C 1.53009 * 117.49825 * 159.88446 * 9 8 6 19 19 C 1.53002 * 117.50014 * 91.22798 * 9 8 6 20 20 H 1.09004 * 109.46864 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47076 * 299.99974 * 1 2 3 22 22 H 1.09000 * 109.47484 * 59.99964 * 1 2 3 23 23 H 1.00896 * 111.00048 * 236.04436 * 2 1 3 24 24 H 1.09003 * 109.47004 * 59.99953 * 3 2 1 25 25 H 1.09000 * 109.46869 * 300.00497 * 3 2 1 26 26 H 1.09003 * 109.47244 * 60.00024 * 4 3 2 27 27 H 1.08996 * 109.47100 * 300.00148 * 4 3 2 28 28 H 1.08993 * 109.47131 * 59.99878 * 5 4 3 29 29 H 1.09000 * 109.46995 * 299.99553 * 5 4 3 30 30 H 1.09006 * 109.46963 * 64.90601 * 7 6 5 31 31 H 1.08994 * 109.47773 * 184.91211 * 7 6 5 32 32 H 1.09001 * 109.47175 * 304.91340 * 7 6 5 33 33 H 1.09004 * 109.46490 * 283.48474 * 8 6 5 34 34 H 1.09001 * 109.46975 * 43.47612 * 8 6 5 35 35 H 0.97001 * 120.00541 * 185.04017 * 13 12 10 36 36 H 1.08995 * 117.49613 * 359.97438 * 18 9 8 37 37 H 1.08997 * 117.49672 * 145.01575 * 18 9 8 38 38 H 1.09002 * 117.49383 * 214.97885 * 19 9 8 39 39 H 1.08997 * 117.49982 * 359.96863 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5248 1.3307 -0.0006 5 6 4.0731 2.7591 0.0000 6 7 5.5415 2.7199 -0.0012 7 6 6.0520 2.1502 -1.2553 8 6 6.1041 4.0558 0.2375 9 6 7.5753 3.9258 0.6367 10 6 7.8534 3.0182 1.8071 11 1 8.7517 2.4188 1.8241 12 6 6.9612 2.9530 2.8563 13 7 6.0096 3.8539 2.9671 14 14 7.1040 1.5848 4.1201 15 1 8.4313 1.6591 4.7820 16 1 6.0343 1.7383 5.1386 17 1 6.9605 0.2701 3.4448 18 6 8.4632 5.1613 0.4741 19 6 8.6179 3.9759 -0.4819 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8305 -0.5261 -0.7813 24 1 1.6459 1.8949 0.8900 25 1 1.6458 1.8948 -0.8900 26 1 3.8740 0.8075 -0.8909 27 1 3.8747 0.8072 0.8891 28 1 3.7239 3.2819 0.8904 29 1 3.7233 3.2830 -0.8896 30 1 5.7921 2.8074 -2.0853 31 1 7.1359 2.0521 -1.1952 32 1 5.6067 1.1684 -1.4162 33 1 6.0256 4.6509 -0.6723 34 1 5.5516 4.5445 1.0401 35 1 5.4277 3.8518 3.7432 36 1 7.9992 6.0664 0.0824 37 1 9.2487 5.3173 1.2135 38 1 9.5052 3.3525 -0.3711 39 1 8.2557 4.1009 -1.5023 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087472621.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:56 Heat of formation + Delta-G solvation = 30.746077 kcal Electronic energy + Delta-G solvation = -16374.340681 eV Core-core repulsion = 13931.823386 eV Total energy + Delta-G solvation = -2442.517295 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -37.73219 -36.45606 -34.86971 -31.92632 -31.02164 -26.62589 -26.35754 -25.24038 -23.64606 -21.75023 -21.06288 -20.08914 -18.77863 -16.07955 -15.98173 -15.07817 -14.66937 -14.44427 -14.11980 -13.77644 -13.75375 -13.21005 -12.82852 -12.43947 -11.95581 -11.60125 -11.48912 -11.23770 -10.94187 -10.89693 -10.77331 -10.68546 -10.39812 -10.35977 -10.06360 -9.89484 -9.15911 -8.93867 -8.52209 -8.45351 -7.86991 -7.10909 -5.83805 -3.82421 3.43380 3.48180 3.54009 4.22995 4.56049 4.86870 5.18331 5.24705 5.33423 5.41039 5.59787 5.69783 5.74215 5.78724 5.89961 6.00864 6.09848 6.16978 6.23536 6.27786 6.45205 6.61109 6.67185 6.70564 6.76640 6.79870 6.89754 7.03202 7.04749 7.26468 7.35382 7.42394 7.65521 8.10397 8.25082 8.30760 8.65410 9.09803 9.76524 11.20253 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022643 B = 0.008365 C = 0.006734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.315042 B = 3346.668286 C = 4156.746412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.696 5.696 3 C 0.060 3.940 4 C -0.112 4.112 5 C 0.065 3.935 6 N -0.503 5.503 7 C 0.028 3.972 8 C 0.102 3.898 9 C 0.070 3.930 10 C -0.474 4.474 11 H 0.052 0.948 12 C 0.091 3.909 13 N -0.878 5.878 14 Si 0.888 3.112 15 H -0.283 1.283 16 H -0.290 1.290 17 H -0.275 1.275 18 C -0.208 4.208 19 C -0.218 4.218 20 H 0.064 0.936 21 H 0.064 0.936 22 H 0.018 0.982 23 H 0.339 0.661 24 H 0.072 0.928 25 H 0.024 0.976 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.010 0.990 30 H 0.002 0.998 31 H 0.072 0.928 32 H 0.051 0.949 33 H -0.014 1.014 34 H 0.113 0.887 35 H 0.257 0.743 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.780 -3.564 -6.788 10.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.326 5.326 3 C -0.070 4.070 4 C -0.151 4.151 5 C -0.064 4.064 6 N -0.225 5.225 7 C -0.120 4.120 8 C -0.025 4.025 9 C 0.069 3.931 10 C -0.511 4.511 11 H 0.071 0.929 12 C -0.112 4.112 13 N -0.516 5.516 14 Si 0.717 3.283 15 H -0.209 1.209 16 H -0.216 1.216 17 H -0.201 1.201 18 C -0.247 4.247 19 C -0.256 4.256 20 H 0.083 0.917 21 H 0.082 0.918 22 H 0.036 0.964 23 H 0.156 0.844 24 H 0.091 0.909 25 H 0.042 0.958 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.028 0.972 30 H 0.020 0.980 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.004 0.996 34 H 0.131 0.869 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.801 -3.923 -5.616 10.382 hybrid contribution -0.315 0.147 -1.017 1.075 sum -8.116 -3.776 -6.634 11.142 Atomic orbital electron populations 1.22176 0.88248 1.01494 1.00239 1.60382 1.07315 1.14992 1.49901 1.22003 0.96042 0.88697 1.00211 1.21562 0.92518 0.98017 1.02955 1.21946 0.89552 0.95278 0.99651 1.61610 1.03975 1.24941 1.32000 1.22416 1.01776 0.97945 0.89892 1.21750 0.96822 0.86723 0.97182 1.18919 0.87255 0.93968 0.92926 1.20214 1.05675 1.23091 1.02104 0.92933 1.24703 0.94359 0.94876 0.97234 1.69783 1.19949 1.33489 1.28357 0.86745 0.77076 0.83782 0.80712 1.20932 1.21584 1.20059 1.22969 1.06449 0.92533 1.02701 1.22936 1.04269 1.03920 0.94439 0.91703 0.91759 0.96377 0.84380 0.90931 0.95810 0.92635 0.90188 0.90593 0.97189 0.98002 0.90912 0.92996 0.99596 0.86906 0.93266 0.92141 0.90512 0.90954 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.70 60.06 0.64 0.94 16 2 N -0.70 -8.94 6.86 -121.13 -0.83 -9.77 16 3 C 0.06 0.84 5.69 -3.82 -0.02 0.82 16 4 C -0.11 -1.84 5.41 -26.73 -0.14 -1.98 16 5 C 0.06 1.22 4.95 -3.83 -0.02 1.20 16 6 N -0.50 -10.91 4.32 -242.93 -1.05 -11.96 16 7 C 0.03 0.54 9.10 60.06 0.55 1.09 16 8 C 0.10 2.42 4.12 -3.83 -0.02 2.40 16 9 C 0.07 1.75 1.58 -155.66 -0.25 1.50 16 10 C -0.47 -12.99 8.72 -34.44 -0.30 -13.29 16 11 H 0.05 1.47 7.85 -52.49 -0.41 1.05 16 12 C 0.09 2.48 5.14 -17.82 -0.09 2.39 16 13 N -0.88 -24.10 10.88 55.43 0.60 -23.50 16 14 Si 0.89 21.67 29.56 -169.99 -5.03 16.64 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 C -0.21 -4.83 9.96 -26.69 -0.27 -5.10 16 19 C -0.22 -4.84 8.48 -26.69 -0.23 -5.07 16 20 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 22 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 23 H 0.34 3.89 8.81 -39.29 -0.35 3.54 16 24 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.86 6.45 -51.93 -0.34 0.52 16 27 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 28 H 0.08 1.54 7.86 -51.93 -0.41 1.13 16 29 H 0.01 0.18 8.12 -51.93 -0.42 -0.24 16 30 H 0.00 0.03 8.09 -51.93 -0.42 -0.39 16 31 H 0.07 1.48 6.43 -51.93 -0.33 1.14 16 32 H 0.05 0.89 6.26 -51.93 -0.33 0.57 16 33 H -0.01 -0.32 7.95 -51.93 -0.41 -0.73 16 34 H 0.11 2.92 5.70 -51.93 -0.30 2.63 16 35 H 0.26 6.85 8.32 -40.82 -0.34 6.52 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 38 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 310.02 15.07 4.67 4.67 Total: -1.00 -27.85 310.02 -8.85 -36.70 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -7.07 Total: 2.33 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -0.14 Total: -15.11 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: -1.28 Total: -45.23 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.85 -8.85 -36.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087472621.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.445 kcal (2) G-P(sol) polarization free energy of solvation -27.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds