Wall clock time and date at job start Mon Mar 30 2020 03:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46909 * 110.99980 * 2 1 4 4 C 1.52998 * 109.47196 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47012 * 180.02562 * 4 3 2 6 6 N 1.46896 * 109.46907 * 180.02562 * 5 4 3 7 7 C 1.46898 * 111.00636 * 66.04315 * 6 5 4 8 8 C 1.46900 * 111.00169 * 190.00301 * 6 5 4 9 9 C 1.52992 * 109.47477 * 163.48196 * 8 6 5 10 10 C 1.50696 * 115.55145 * 305.55053 * 9 8 6 11 11 H 1.08000 * 120.00330 * 144.40837 * 10 9 8 12 12 C 1.37877 * 120.00146 * 324.41255 * 10 9 8 13 13 N 1.31512 * 119.99939 * 346.97080 * 12 10 9 14 14 Si 1.86804 * 120.00202 * 166.96517 * 12 10 9 15 15 H 1.48500 * 109.46565 * 60.00096 * 14 12 10 16 16 H 1.48496 * 109.46943 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47190 * 300.00613 * 14 12 10 18 18 C 1.53009 * 117.49825 * 159.88446 * 9 8 6 19 19 C 1.53002 * 117.50014 * 91.22798 * 9 8 6 20 20 H 1.09004 * 109.46864 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47076 * 299.99974 * 1 2 3 22 22 H 1.09000 * 109.47484 * 59.99964 * 1 2 3 23 23 H 1.00896 * 111.00048 * 236.04436 * 2 1 3 24 24 H 1.09003 * 109.47004 * 59.99953 * 3 2 1 25 25 H 1.09000 * 109.46869 * 300.00497 * 3 2 1 26 26 H 1.09003 * 109.47244 * 60.00024 * 4 3 2 27 27 H 1.08996 * 109.47100 * 300.00148 * 4 3 2 28 28 H 1.08993 * 109.47131 * 59.99878 * 5 4 3 29 29 H 1.09000 * 109.46995 * 299.99553 * 5 4 3 30 30 H 1.09006 * 109.46963 * 64.90601 * 7 6 5 31 31 H 1.08994 * 109.47773 * 184.91211 * 7 6 5 32 32 H 1.09001 * 109.47175 * 304.91340 * 7 6 5 33 33 H 1.09004 * 109.46490 * 283.48474 * 8 6 5 34 34 H 1.09001 * 109.46975 * 43.47612 * 8 6 5 35 35 H 0.97001 * 120.00541 * 185.04017 * 13 12 10 36 36 H 1.08995 * 117.49613 * 359.97438 * 18 9 8 37 37 H 1.08997 * 117.49672 * 145.01575 * 18 9 8 38 38 H 1.09002 * 117.49383 * 214.97885 * 19 9 8 39 39 H 1.08997 * 117.49982 * 359.96863 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5248 1.3307 -0.0006 5 6 4.0731 2.7591 0.0000 6 7 5.5415 2.7199 -0.0012 7 6 6.0520 2.1502 -1.2553 8 6 6.1041 4.0558 0.2375 9 6 7.5753 3.9258 0.6367 10 6 7.8534 3.0182 1.8071 11 1 8.7517 2.4188 1.8241 12 6 6.9612 2.9530 2.8563 13 7 6.0096 3.8539 2.9671 14 14 7.1040 1.5848 4.1201 15 1 8.4313 1.6591 4.7820 16 1 6.0343 1.7383 5.1386 17 1 6.9605 0.2701 3.4448 18 6 8.4632 5.1613 0.4741 19 6 8.6179 3.9759 -0.4819 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8305 -0.5261 -0.7813 24 1 1.6459 1.8949 0.8900 25 1 1.6458 1.8948 -0.8900 26 1 3.8740 0.8075 -0.8909 27 1 3.8747 0.8072 0.8891 28 1 3.7239 3.2819 0.8904 29 1 3.7233 3.2830 -0.8896 30 1 5.7921 2.8074 -2.0853 31 1 7.1359 2.0521 -1.1952 32 1 5.6067 1.1684 -1.4162 33 1 6.0256 4.6509 -0.6723 34 1 5.5516 4.5445 1.0401 35 1 5.4277 3.8518 3.7432 36 1 7.9992 6.0664 0.0824 37 1 9.2487 5.3173 1.2135 38 1 9.5052 3.3525 -0.3711 39 1 8.2557 4.1009 -1.5023 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087472621.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:55 Heat of formation + Delta-G solvation = 12.865818 kcal Electronic energy + Delta-G solvation = -16375.116027 eV Core-core repulsion = 13931.823386 eV Total energy + Delta-G solvation = -2443.292641 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.40346 -37.77670 -36.35611 -33.98939 -32.32393 -28.31226 -27.67460 -27.17008 -24.89362 -23.05983 -22.87120 -21.56931 -20.71634 -17.97512 -17.15833 -16.60171 -16.45969 -15.91606 -15.60248 -15.36179 -15.08984 -14.60757 -14.29685 -14.06276 -13.35064 -13.10279 -12.97377 -12.75928 -12.66308 -12.49077 -12.39255 -12.29680 -12.15135 -12.07795 -11.81038 -11.47076 -11.03574 -10.92713 -10.41605 -9.83967 -9.41244 -8.73485 -7.89899 -5.93785 1.46066 1.51104 1.56088 2.53759 3.05169 3.24652 3.54095 3.80198 4.01952 4.26953 4.36765 4.37875 4.47673 4.54515 4.57050 4.64616 4.68283 4.74798 4.77292 4.81766 4.87721 4.94984 4.99358 5.00910 5.17021 5.20652 5.32439 5.40072 5.46827 5.58988 5.69795 6.02581 6.08167 6.45521 6.48865 6.63200 6.73612 7.03567 7.66272 9.11487 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022643 B = 0.008365 C = 0.006734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.315042 B = 3346.668286 C = 4156.746412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.710 5.710 3 C 0.069 3.931 4 C -0.099 4.099 5 C 0.069 3.931 6 N -0.527 5.527 7 C 0.033 3.967 8 C 0.114 3.886 9 C 0.040 3.960 10 C -0.491 4.491 11 H 0.038 0.962 12 C 0.057 3.943 13 N -0.892 5.892 14 Si 0.935 3.065 15 H -0.280 1.280 16 H -0.288 1.288 17 H -0.278 1.278 18 C -0.209 4.209 19 C -0.193 4.193 20 H 0.080 0.920 21 H 0.059 0.941 22 H 0.029 0.971 23 H 0.348 0.652 24 H 0.061 0.939 25 H 0.038 0.962 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.026 0.974 30 H 0.016 0.984 31 H 0.058 0.942 32 H 0.070 0.930 33 H -0.006 1.006 34 H 0.085 0.915 35 H 0.255 0.745 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.471 -4.262 -8.040 12.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.341 5.341 3 C -0.060 4.060 4 C -0.138 4.138 5 C -0.059 4.059 6 N -0.250 5.250 7 C -0.115 4.115 8 C -0.014 4.014 9 C 0.039 3.961 10 C -0.528 4.528 11 H 0.057 0.943 12 C -0.144 4.144 13 N -0.530 5.530 14 Si 0.762 3.238 15 H -0.206 1.206 16 H -0.214 1.214 17 H -0.204 1.204 18 C -0.248 4.248 19 C -0.231 4.231 20 H 0.098 0.902 21 H 0.078 0.922 22 H 0.047 0.953 23 H 0.166 0.834 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.034 0.966 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.012 0.988 34 H 0.103 0.897 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.491 -4.627 -6.876 11.865 hybrid contribution -0.086 0.364 -0.648 0.749 sum -8.578 -4.262 -7.524 12.180 Atomic orbital electron populations 1.22225 0.86685 1.02663 1.00540 1.60340 1.08891 1.14231 1.50683 1.21821 0.94171 0.89677 1.00380 1.21405 0.94228 0.96076 1.02050 1.21900 0.88082 0.96739 0.99205 1.61535 1.05592 1.24018 1.33837 1.22378 1.00927 0.99056 0.89186 1.21463 0.95720 0.87780 0.96389 1.19032 0.88671 0.94714 0.93660 1.20384 1.05388 1.23650 1.03387 0.94346 1.25186 0.94362 0.96242 0.98611 1.69898 1.20251 1.34243 1.28572 0.86010 0.77051 0.81591 0.79107 1.20590 1.21351 1.20403 1.22960 1.05788 0.93018 1.03021 1.22889 1.02984 1.02495 0.94707 0.90150 0.92203 0.95273 0.83429 0.92006 0.94378 0.91284 0.93160 0.92938 0.95569 0.96552 0.92337 0.91107 0.98846 0.89696 0.93500 0.90822 0.91423 0.90950 0.89942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.70 127.69 1.37 1.89 16 2 N -0.71 -16.88 6.86 -537.13 -3.68 -20.56 16 3 C 0.07 1.83 5.69 86.30 0.49 2.32 16 4 C -0.10 -3.14 5.41 30.59 0.17 -2.97 16 5 C 0.07 2.55 4.95 86.30 0.43 2.98 16 6 N -0.53 -22.46 4.32 -922.48 -3.98 -26.45 16 7 C 0.03 1.19 9.10 127.69 1.16 2.35 16 8 C 0.11 5.35 4.12 86.30 0.36 5.70 16 9 C 0.04 1.98 1.58 -52.93 -0.08 1.89 16 10 C -0.49 -27.05 8.72 25.60 0.22 -26.83 16 11 H 0.04 2.16 7.85 -2.91 -0.02 2.14 16 12 C 0.06 3.14 5.14 84.66 0.44 3.57 16 13 N -0.89 -49.53 10.88 21.45 0.23 -49.30 16 14 Si 0.93 44.70 29.56 68.60 2.03 46.73 16 15 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 16 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 17 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 18 C -0.21 -9.55 9.96 30.62 0.30 -9.25 16 19 C -0.19 -8.28 8.48 30.62 0.26 -8.02 16 20 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 21 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 23 H 0.35 7.16 8.81 -89.70 -0.79 6.37 16 24 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 1.97 6.45 -2.39 -0.02 1.96 16 27 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.05 2.15 7.86 -2.39 -0.02 2.14 16 29 H 0.03 0.88 8.12 -2.39 -0.02 0.86 16 30 H 0.02 0.54 8.09 -2.38 -0.02 0.52 16 31 H 0.06 2.27 6.43 -2.39 -0.02 2.26 16 32 H 0.07 2.26 6.26 -2.39 -0.01 2.25 16 33 H -0.01 -0.28 7.95 -2.38 -0.02 -0.30 16 34 H 0.09 4.45 5.70 -2.39 -0.01 4.44 16 35 H 0.26 13.79 8.32 -92.71 -0.77 13.02 16 36 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 38 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 39 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -58.37 310.02 -0.09 -58.47 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.21 Total: 17.48 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: 5.11 Total: -26.37 kcal Atomic # 7 Polarization: -88.87 SS G_CDS: -7.43 Total: -96.31 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -58.37 -0.09 -58.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087472621.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.331 kcal (2) G-P(sol) polarization free energy of solvation -58.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds