Wall clock time and date at job start Mon Mar 30 2020 03:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99841 * 2 1 4 4 H 1.48501 * 109.47214 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47028 * 120.00050 * 3 2 1 6 6 H 1.48498 * 109.46971 * 239.99857 * 3 2 1 7 7 C 1.37877 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00089 * 343.72889 * 7 2 1 9 9 C 1.50694 * 119.99812 * 163.72961 * 7 2 1 10 10 H 1.09005 * 109.47534 * 54.51015 * 9 7 2 11 11 N 1.46904 * 109.47353 * 294.51533 * 9 7 2 12 12 C 1.50701 * 109.47316 * 174.51604 * 9 7 2 13 13 C 1.38168 * 120.01710 * 99.99870 * 12 9 7 14 14 C 1.38228 * 120.06855 * 180.02562 * 13 12 9 15 15 C 1.38412 * 120.09727 * 359.97438 * 14 13 12 16 16 Cl 1.73592 * 119.98394 * 179.97438 * 15 14 13 17 17 C 1.38236 * 120.02752 * 0.02562 * 15 14 13 18 18 C 1.38727 * 120.01059 * 279.72657 * 12 9 7 19 19 O 1.35899 * 120.04881 * 0.02562 * 18 12 9 20 20 H 0.96997 * 119.99695 * 181.22253 * 1 2 3 21 21 H 1.00904 * 110.99471 * 306.16298 * 11 9 7 22 22 H 1.00901 * 110.99943 * 70.11182 * 11 9 7 23 23 H 1.07997 * 119.96707 * 359.97438 * 13 12 9 24 24 H 1.07998 * 119.94993 * 179.97438 * 14 13 12 25 25 H 1.08005 * 120.03255 * 179.97438 * 17 15 14 26 26 H 0.96707 * 113.99178 * 90.00556 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1941 0.0005 8 1 1.4970 -2.1105 0.2630 9 6 3.4663 -1.2203 -0.3651 10 1 4.0114 -0.5185 0.2661 11 7 3.6255 -0.8370 -1.7743 12 6 4.0111 -2.6100 -0.1579 13 6 4.1655 -3.4598 -1.2364 14 6 4.6646 -4.7349 -1.0475 15 6 5.0114 -5.1635 0.2221 16 17 5.6373 -6.7657 0.4560 17 6 4.8586 -4.3167 1.3039 18 6 4.3631 -3.0347 1.1150 19 8 4.2165 -2.1984 2.1761 20 1 -0.4849 -0.8399 0.0179 21 1 3.0496 -1.4105 -2.3722 22 1 3.4225 0.1423 -1.9078 23 1 3.8952 -3.1277 -2.2278 24 1 4.7841 -5.3977 -1.8918 25 1 5.1288 -4.6512 2.2947 26 1 3.3539 -2.2597 2.6089 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095685976.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:32 Heat of formation + Delta-G solvation = -30.638961 kcal Electronic energy + Delta-G solvation = -13448.180412 eV Core-core repulsion = 10938.492482 eV Total energy + Delta-G solvation = -2509.687931 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.045 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.47221 -36.68683 -35.85228 -34.77494 -32.01774 -29.81068 -29.18158 -25.93077 -22.85802 -22.17570 -19.94874 -17.97201 -17.81912 -16.12283 -15.71677 -14.94033 -14.50994 -13.90172 -13.67473 -12.90878 -12.84302 -12.72900 -12.47642 -12.02929 -11.72047 -11.02275 -10.80236 -10.69670 -10.36821 -10.14382 -9.93394 -9.38639 -8.61632 -8.44855 -8.08249 -7.63403 -6.60444 -4.36098 1.58655 1.65014 2.35657 3.20774 3.33107 3.47715 3.98304 4.28257 4.79156 5.03959 5.21410 5.37845 5.47450 5.80783 6.07483 6.09371 6.24190 6.49728 6.64724 6.78813 7.11804 7.23324 7.66261 8.08859 8.17451 8.27720 8.40830 8.68982 9.36076 10.69735 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.048108 B = 0.007556 C = 0.007269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.889066 B = 3704.650218 C = 3851.253159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.035 3.965 3 Si 1.046 2.954 4 H -0.284 1.284 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.627 4.627 8 H 0.055 0.945 9 C 0.213 3.787 10 H 0.055 0.945 11 N -0.859 5.859 12 C -0.040 4.040 13 C -0.087 4.087 14 C -0.124 4.124 15 C -0.042 4.042 16 Cl -0.089 7.089 17 C -0.143 4.143 18 C 0.116 3.884 19 O -0.490 6.490 20 H 0.270 0.730 21 H 0.328 0.672 22 H 0.331 0.669 23 H 0.137 0.863 24 H 0.126 0.874 25 H 0.130 0.870 26 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.926 -7.291 0.046 10.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.172 4.172 3 Si 0.874 3.126 4 H -0.210 1.210 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.667 4.667 8 H 0.073 0.927 9 C 0.103 3.897 10 H 0.072 0.928 11 N -0.391 5.391 12 C -0.041 4.041 13 C -0.106 4.106 14 C -0.143 4.143 15 C -0.068 4.068 16 Cl -0.061 7.061 17 C -0.162 4.162 18 C 0.070 3.930 19 O -0.301 6.301 20 H 0.080 0.920 21 H 0.139 0.861 22 H 0.146 0.854 23 H 0.154 0.846 24 H 0.144 0.856 25 H 0.148 0.852 26 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 9.106 -5.810 0.028 10.802 hybrid contribution -1.370 -1.848 0.343 2.326 sum 7.737 -7.658 0.371 10.892 Atomic orbital electron populations 1.70869 1.06947 1.30660 1.44246 1.25844 0.96165 1.02483 0.92738 0.83964 0.75267 0.75790 0.77558 1.20961 1.20418 1.20195 1.22481 0.94056 0.96320 1.53797 0.92662 1.18194 0.95258 0.88717 0.87519 0.92771 1.59751 1.62291 1.08695 1.08318 1.20678 0.93288 0.98285 0.91852 1.20873 0.98247 0.91801 0.99671 1.20990 1.01206 0.96943 0.95114 1.20490 1.04950 0.86439 0.94937 1.98323 1.86152 1.24188 1.97408 1.21138 1.03720 0.92878 0.98506 1.18084 0.99361 0.88164 0.87387 1.84694 1.39784 1.61509 1.44064 0.92013 0.86085 0.85383 0.84577 0.85602 0.85247 0.75033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.77 13.70 55.43 0.76 -25.01 15 2 C 0.03 0.93 5.44 -17.82 -0.10 0.83 15 3 Si 1.05 23.62 26.54 -169.99 -4.51 19.10 15 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 6 H -0.28 -5.67 5.53 56.52 0.31 -5.35 15 7 C -0.63 -16.17 8.95 -34.44 -0.31 -16.48 15 8 H 0.06 1.56 7.99 -52.49 -0.42 1.14 15 9 C 0.21 4.83 2.14 -70.02 -0.15 4.68 15 10 H 0.05 1.31 6.53 -51.93 -0.34 0.97 15 11 N -0.86 -17.99 8.50 -6.65 -0.06 -18.04 15 12 C -0.04 -0.82 5.04 -104.47 -0.53 -1.34 15 13 C -0.09 -1.59 9.27 -39.61 -0.37 -1.96 15 14 C -0.12 -2.00 9.83 -39.52 -0.39 -2.39 15 15 C -0.04 -0.67 6.32 -39.52 -0.25 -0.92 15 16 Cl -0.09 -1.24 28.95 -51.86 -1.50 -2.74 15 17 C -0.14 -2.43 9.77 -39.40 -0.38 -2.81 15 18 C 0.12 2.23 6.67 -39.22 -0.26 1.97 15 19 O -0.49 -9.21 12.73 -19.42 -0.25 -9.46 15 20 H 0.27 7.79 8.72 -40.82 -0.36 7.43 15 21 H 0.33 6.58 7.60 -39.29 -0.30 6.29 15 22 H 0.33 6.99 5.67 -39.29 -0.22 6.76 15 23 H 0.14 2.34 6.41 -52.49 -0.34 2.01 15 24 H 0.13 1.71 8.06 -52.49 -0.42 1.29 15 25 H 0.13 1.94 8.06 -52.48 -0.42 1.52 15 26 H 0.39 6.26 9.06 45.56 0.41 6.68 15 LS Contribution 241.68 15.07 3.64 3.64 Total: -1.00 -28.14 241.68 -5.94 -34.08 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -1.29 Total: 16.85 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -2.73 Total: -18.43 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.70 Total: -43.05 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -0.25 Total: -9.46 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -4.51 Total: 19.10 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -1.50 Total: -2.74 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.14 -5.94 -34.08 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095685976.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.438 kcal (2) G-P(sol) polarization free energy of solvation -28.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds