Wall clock time and date at job start Mon Mar 30 2020 03:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46899 * 111.00213 * 2 1 4 4 C 1.46905 * 111.00027 * 236.05088 * 2 1 3 5 5 C 1.53003 * 110.01274 * 304.33314 * 4 2 1 6 6 N 1.46897 * 109.47371 * 305.48463 * 5 4 2 7 7 C 1.46893 * 111.00010 * 183.15468 * 6 5 4 8 8 C 1.50704 * 109.46996 * 180.02562 * 7 6 5 9 9 H 1.07998 * 120.00224 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99883 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00266 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99835 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47211 * 59.99908 * 12 10 8 14 14 H 1.48500 * 109.47016 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.46991 * 299.99223 * 12 10 8 16 16 C 1.54267 * 110.03178 * 182.89460 * 4 2 1 17 17 C 1.54893 * 104.19580 * 217.10407 * 16 4 2 18 18 C 1.54895 * 102.74490 * 37.94028 * 17 16 4 19 19 C 1.53870 * 110.03361 * 65.72666 * 4 2 1 20 20 H 1.09004 * 109.46856 * 190.99981 * 1 2 3 21 21 H 1.08998 * 109.47011 * 71.00463 * 1 2 3 22 22 H 1.08997 * 109.47327 * 311.00052 * 1 2 3 23 23 H 1.09012 * 109.46777 * 53.56495 * 3 2 1 24 24 H 1.08996 * 109.47869 * 173.56887 * 3 2 1 25 25 H 1.09004 * 109.47146 * 293.57259 * 3 2 1 26 26 H 1.08997 * 109.47221 * 65.49362 * 5 4 2 27 27 H 1.09001 * 109.46508 * 185.48996 * 5 4 2 28 28 H 1.00905 * 110.99280 * 59.20293 * 6 5 4 29 29 H 1.08999 * 109.47259 * 299.99963 * 7 6 5 30 30 H 1.08993 * 109.47314 * 60.00248 * 7 6 5 31 31 H 0.96995 * 120.00298 * 180.02562 * 11 10 8 32 32 H 1.08999 * 110.48565 * 335.78165 * 16 4 2 33 33 H 1.08996 * 110.48778 * 98.42274 * 16 4 2 34 34 H 1.08995 * 110.75245 * 279.63191 * 17 16 4 35 35 H 1.09000 * 110.91540 * 156.32686 * 17 16 4 36 36 H 1.09007 * 110.48077 * 203.38275 * 18 17 16 37 37 H 1.08996 * 110.48609 * 80.74098 * 18 17 16 38 38 H 1.09003 * 110.02924 * 238.57224 * 19 4 2 39 39 H 1.09003 * 110.03237 * 359.97438 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 -1.1377 5 6 1.4261 -2.1860 -1.1213 6 7 1.6977 -2.8074 0.1818 7 6 1.2306 -4.1999 0.2085 8 6 1.5251 -4.8027 1.5580 9 1 2.0111 -4.2107 2.3194 10 6 1.1751 -6.1103 1.8201 11 7 0.5838 -6.8313 0.8927 12 14 1.5408 -6.8577 3.4926 13 1 0.8398 -6.0805 4.5461 14 1 1.0685 -8.2653 3.5196 15 1 3.0043 -6.8213 3.7417 16 6 3.5362 -0.8124 -1.0757 17 6 3.9790 -0.7157 -2.5569 18 6 2.9606 0.2876 -3.1531 19 6 1.6296 -0.0665 -2.4585 20 1 -0.3633 -1.0088 0.1961 21 1 -0.3633 0.3345 -0.9717 22 1 -0.3634 0.6742 0.7755 23 1 1.5558 1.9294 0.8269 24 1 3.0790 1.3447 0.1151 25 1 1.7420 1.8579 -0.9419 26 1 0.3497 -2.1478 -1.2884 27 1 1.8956 -2.7747 -1.9094 28 1 1.2837 -2.2727 0.9306 29 1 0.1564 -4.2263 0.0258 30 1 1.7448 -4.7705 -0.5647 31 1 0.3372 -7.7511 1.0773 32 1 3.9208 0.0338 -0.5065 33 1 3.8722 -1.7523 -0.6377 34 1 3.8988 -1.6853 -3.0481 35 1 4.9945 -0.3275 -2.6348 36 1 2.8766 0.1504 -4.2313 37 1 3.2523 1.3115 -2.9195 38 1 1.0471 -0.7391 -3.0882 39 1 1.0609 0.8410 -2.2554 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105957965.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:06 Heat of formation + Delta-G solvation = -19.119800 kcal Electronic energy + Delta-G solvation = -16618.146614 eV Core-core repulsion = 14173.466973 eV Total energy + Delta-G solvation = -2444.679641 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.95148 -36.61728 -35.77974 -34.39491 -30.57045 -29.80867 -28.43647 -27.88089 -24.89014 -24.27824 -23.23065 -21.36680 -19.51722 -18.47687 -17.49192 -16.89258 -16.38724 -16.07107 -15.68293 -15.06681 -14.92255 -14.71402 -14.25582 -14.00812 -13.40728 -13.18954 -13.09657 -12.85037 -12.70295 -12.59672 -12.45314 -12.34242 -12.06364 -11.95788 -11.81072 -11.64799 -11.50679 -11.27956 -11.06054 -10.64287 -9.08512 -8.97440 -8.21287 -6.32499 1.41055 1.45337 1.53304 2.41127 3.02708 3.11532 3.51998 3.76191 3.86304 4.06505 4.29186 4.31428 4.39635 4.49609 4.52082 4.64817 4.67470 4.73538 4.79892 4.85638 4.89877 4.98768 5.03406 5.08995 5.11769 5.13285 5.22873 5.25367 5.30394 5.52138 5.59594 5.64670 6.04412 6.25561 6.27306 6.54198 6.78901 6.96751 7.38701 8.90310 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.037325 B = 0.006251 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.981550 B = 4478.363668 C = 4695.890578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.546 5.546 3 C 0.022 3.978 4 C 0.120 3.880 5 C 0.078 3.922 6 N -0.673 5.673 7 C 0.210 3.790 8 C -0.533 4.533 9 H 0.063 0.937 10 C 0.000 4.000 11 N -0.936 5.936 12 Si 0.974 3.026 13 H -0.266 1.266 14 H -0.281 1.281 15 H -0.268 1.268 16 C -0.107 4.107 17 C -0.124 4.124 18 C -0.111 4.111 19 C -0.150 4.150 20 H 0.042 0.958 21 H 0.034 0.966 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.037 0.963 26 H 0.008 0.992 27 H 0.053 0.947 28 H 0.340 0.660 29 H -0.047 1.047 30 H -0.005 1.005 31 H 0.265 0.735 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.150 17.237 -5.732 18.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.269 5.269 3 C -0.125 4.125 4 C 0.030 3.970 5 C -0.052 4.052 6 N -0.304 5.304 7 C 0.082 3.918 8 C -0.571 4.571 9 H 0.081 0.919 10 C -0.198 4.198 11 N -0.576 5.576 12 Si 0.798 3.202 13 H -0.191 1.191 14 H -0.207 1.207 15 H -0.193 1.193 16 C -0.145 4.145 17 C -0.161 4.161 18 C -0.148 4.148 19 C -0.189 4.189 20 H 0.061 0.939 21 H 0.052 0.948 22 H 0.099 0.901 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.056 0.944 26 H 0.026 0.974 27 H 0.072 0.928 28 H 0.158 0.842 29 H -0.029 1.029 30 H 0.013 0.987 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.871 16.666 -5.479 17.965 hybrid contribution -1.479 -0.532 -0.094 1.575 sum 2.392 16.134 -5.573 17.236 Atomic orbital electron populations 1.22377 0.87870 1.01417 1.00815 1.62049 1.07554 1.14681 1.42632 1.22495 1.01300 0.87767 1.00935 1.21689 0.95715 0.91125 0.88449 1.21976 0.96176 0.94482 0.92611 1.60406 1.63354 1.02626 1.03994 1.19179 0.90579 0.85974 0.96094 1.21507 1.38729 0.97634 0.99272 0.91909 1.25977 0.94704 0.97519 1.01569 1.70091 1.42260 1.09507 1.35777 0.85364 0.78911 0.77083 0.78799 1.19093 1.20677 1.19289 1.22385 0.92787 1.02260 0.97055 1.22508 0.99568 0.99210 0.94855 1.22269 0.93449 0.99441 0.99686 1.22795 0.99064 1.00456 0.96614 0.93949 0.94781 0.90109 0.90801 0.90840 0.94426 0.97418 0.92836 0.84160 1.02938 0.98658 0.92638 0.90250 0.92673 0.92727 0.90005 0.90885 0.90386 0.92440 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 8.56 127.69 1.09 1.71 16 2 N -0.55 -15.16 4.10 -894.54 -3.67 -18.83 16 3 C 0.02 0.47 8.95 127.69 1.14 1.61 16 4 C 0.12 3.51 0.37 4.25 0.00 3.51 16 5 C 0.08 2.97 3.69 86.30 0.32 3.29 16 6 N -0.67 -30.97 5.90 -517.96 -3.06 -34.03 16 7 C 0.21 11.87 5.44 85.56 0.47 12.34 16 8 C -0.53 -31.75 9.32 25.60 0.24 -31.51 16 9 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 10 C 0.00 0.01 5.46 84.66 0.46 0.47 16 11 N -0.94 -58.26 13.29 21.45 0.28 -57.97 16 12 Si 0.97 45.55 29.54 68.60 2.03 47.58 16 13 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 14 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 15 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 16 C -0.11 -3.03 5.77 31.67 0.18 -2.85 16 17 C -0.12 -2.83 6.91 31.89 0.22 -2.61 16 18 C -0.11 -2.16 6.83 31.67 0.22 -1.94 16 19 C -0.15 -3.52 4.85 31.32 0.15 -3.37 16 20 H 0.04 1.36 6.26 -2.39 -0.01 1.34 16 21 H 0.03 0.82 6.55 -2.39 -0.02 0.80 16 22 H 0.08 1.82 7.96 -2.39 -0.02 1.81 16 23 H 0.07 1.37 7.99 -2.38 -0.02 1.35 16 24 H 0.07 1.50 6.00 -2.39 -0.01 1.49 16 25 H 0.04 0.69 6.14 -2.38 -0.01 0.68 16 26 H 0.01 0.30 6.88 -2.39 -0.02 0.29 16 27 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.34 15.48 7.22 -89.69 -0.65 14.83 16 29 H -0.05 -2.86 8.14 -2.39 -0.02 -2.88 16 30 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 31 H 0.26 15.44 8.31 -92.71 -0.77 14.66 16 32 H 0.08 2.03 5.67 -2.39 -0.01 2.02 16 33 H 0.05 1.95 7.45 -2.39 -0.02 1.93 16 34 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.06 1.44 7.67 -2.39 -0.02 1.42 16 39 H 0.07 1.60 5.19 -2.39 -0.01 1.59 16 Total: -1.00 -65.48 294.39 0.44 -65.04 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.37 Total: 17.55 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: 4.49 Total: -19.35 kcal Atomic # 7 Polarization: -104.38 SS G_CDS: -6.44 Total: -110.83 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -65.48 0.44 -65.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105957965.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.921 kcal (2) G-P(sol) polarization free energy of solvation -65.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds