Wall clock time and date at job start Mon Mar 30 2020 03:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 111.00030 * 2 1 4 4 C 1.46903 * 110.99924 * 123.95806 * 2 1 3 5 5 C 1.52997 * 109.47245 * 66.04475 * 4 2 1 6 6 C 1.53002 * 109.47053 * 179.97438 * 5 4 2 7 7 N 1.46903 * 109.47265 * 179.97438 * 6 5 4 8 8 C 1.47904 * 110.99591 * 69.87817 * 7 6 5 9 9 C 1.53991 * 107.05576 * 145.84453 * 8 7 6 10 10 C 1.54598 * 105.14241 * 358.77606 * 9 8 7 11 11 H 1.09002 * 110.72748 * 96.57570 * 10 9 8 12 12 C 1.50698 * 110.72131 * 219.68625 * 10 9 8 13 13 H 1.08005 * 119.99819 * 118.54532 * 12 10 9 14 14 C 1.37875 * 120.00046 * 298.53873 * 12 10 9 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 C 1.48531 * 110.99972 * 187.27228 * 7 6 5 21 21 H 1.08999 * 109.47351 * 296.04081 * 1 2 3 22 22 H 1.09002 * 109.47433 * 56.04551 * 1 2 3 23 23 H 1.09007 * 109.47187 * 176.04466 * 1 2 3 24 24 H 1.09000 * 109.47060 * 183.95529 * 3 2 1 25 25 H 1.08994 * 109.47343 * 303.95417 * 3 2 1 26 26 H 1.09001 * 109.47232 * 63.95696 * 3 2 1 27 27 H 1.08994 * 109.46808 * 306.04335 * 4 2 1 28 28 H 1.09002 * 109.46724 * 186.04314 * 4 2 1 29 29 H 1.09001 * 109.46974 * 60.00080 * 5 4 2 30 30 H 1.08998 * 109.46978 * 300.00075 * 5 4 2 31 31 H 1.09008 * 109.46619 * 60.00079 * 6 5 4 32 32 H 1.08998 * 109.47495 * 300.00621 * 6 5 4 33 33 H 1.08993 * 109.92000 * 26.49039 * 8 7 6 34 34 H 1.09003 * 109.91286 * 265.19644 * 8 7 6 35 35 H 1.08995 * 110.30651 * 239.85562 * 9 8 7 36 36 H 1.08999 * 110.31014 * 117.68861 * 9 8 7 37 37 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 38 38 H 1.09003 * 110.66729 * 81.84931 * 20 7 6 39 39 H 1.08993 * 110.66823 * 318.71703 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 1.6314 -2.2427 0.9702 6 6 2.1803 -3.0406 2.1547 7 7 1.8303 -4.4583 1.9944 8 6 2.5889 -5.0689 0.8813 9 6 2.8730 -6.5299 1.2762 10 6 2.2588 -6.6941 2.6854 11 1 1.2616 -7.1298 2.6232 12 6 3.1520 -7.5339 3.5618 13 1 3.5739 -7.1138 4.4628 14 6 3.4304 -8.8385 3.2133 15 7 2.9169 -9.3500 2.1159 16 14 4.5369 -9.8797 4.3001 17 1 4.6782 -11.2347 3.7089 18 1 3.9384 -9.9901 5.6546 19 1 5.8742 -9.2420 4.4003 20 6 2.1930 -5.2364 3.2065 21 1 -0.3634 0.4511 0.9233 22 1 -0.3634 0.5740 -0.8524 23 1 -0.3634 -1.0253 -0.0709 24 1 3.0827 1.3432 -0.0709 25 1 1.5898 1.9163 -0.8524 26 1 1.7044 1.8723 0.9233 27 1 1.5611 -0.3874 2.0627 28 1 3.0797 -0.6612 1.1755 29 1 2.0658 -2.6214 0.0450 30 1 0.5472 -2.3475 0.9322 31 1 1.7462 -2.6619 3.0802 32 1 3.2645 -2.9356 2.1924 33 1 3.5276 -4.5346 0.7345 34 1 1.9953 -5.0399 -0.0325 35 1 3.9474 -6.7110 1.3082 36 1 2.3945 -7.2117 0.5732 37 1 2.3420 -8.8094 1.5518 38 1 1.4240 -5.1362 3.9725 39 1 3.1631 -4.9209 3.5902 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106872535.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:59 Heat of formation + Delta-G solvation = -5.341634 kcal Electronic energy + Delta-G solvation = -15872.746858 eV Core-core repulsion = 13428.664683 eV Total energy + Delta-G solvation = -2444.082175 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.50669 -37.52391 -34.03803 -32.06023 -29.25361 -28.23093 -27.76369 -25.62516 -23.84732 -22.41092 -20.89597 -20.13157 -19.35924 -16.84401 -15.88182 -15.60113 -15.24285 -14.91350 -14.27041 -14.06454 -13.75204 -13.25412 -12.75310 -12.56017 -12.37289 -11.95780 -11.83045 -11.79366 -11.70776 -11.34177 -10.89744 -10.83472 -10.59467 -10.42072 -10.30163 -10.07291 -9.76879 -9.37193 -8.53569 -8.46212 -8.32285 -7.81827 -6.30780 -4.03363 3.44930 3.46424 3.65310 3.76802 4.51038 4.61904 4.94820 4.99090 5.07126 5.20416 5.37290 5.38831 5.42926 5.47935 5.52436 5.63033 5.69311 5.73896 5.77093 5.89249 5.95540 6.12680 6.26165 6.32044 6.39623 6.45337 6.70853 6.85550 6.87721 6.96032 6.98302 7.29477 7.49781 7.65349 7.76793 8.28875 8.45608 8.91821 9.69242 11.07654 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.072395 B = 0.004459 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.672658 B = 6278.020916 C = 6383.570631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.056 3.944 5 C -0.109 4.109 6 C 0.049 3.951 7 N -0.523 5.523 8 C 0.039 3.961 9 C -0.121 4.121 10 C 0.036 3.964 11 H 0.028 0.972 12 C -0.597 4.597 13 H 0.048 0.952 14 C 0.020 3.980 15 N -0.912 5.912 16 Si 1.067 2.933 17 H -0.283 1.283 18 H -0.288 1.288 19 H -0.289 1.289 20 C 0.049 3.951 21 H 0.024 0.976 22 H 0.065 0.935 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.023 0.977 27 H 0.033 0.967 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.030 0.970 33 H 0.031 0.969 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.273 0.727 38 H 0.063 0.937 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.105 17.165 -2.836 17.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.273 5.273 3 C -0.124 4.124 4 C -0.073 4.073 5 C -0.148 4.148 6 C -0.080 4.080 7 N -0.247 5.247 8 C -0.089 4.089 9 C -0.160 4.160 10 C 0.017 3.983 11 H 0.046 0.954 12 C -0.635 4.635 13 H 0.066 0.934 14 C -0.184 4.184 15 N -0.548 5.548 16 Si 0.896 3.104 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.216 1.216 20 C -0.078 4.078 21 H 0.042 0.958 22 H 0.084 0.916 23 H 0.093 0.907 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.042 0.958 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -1.831 15.420 -3.225 15.860 hybrid contribution -0.040 2.130 0.746 2.258 sum -1.872 17.551 -2.479 17.824 Atomic orbital electron populations 1.22446 0.87363 1.02784 1.00120 1.61966 1.08160 1.13518 1.43618 1.22373 1.00772 0.88975 1.00262 1.22145 0.99960 0.94277 0.90878 1.21537 1.01837 0.92415 0.98964 1.22169 0.97733 0.90155 0.97966 1.64730 1.53736 1.00855 1.05382 1.22887 0.94951 0.96636 0.94407 1.22628 1.01130 0.92479 0.99763 1.19694 0.96429 0.90516 0.91645 0.95425 1.21936 1.32641 0.99071 1.09901 0.93363 1.25768 0.98406 0.96125 0.98134 1.70778 1.30828 1.40254 1.12975 0.83571 0.75629 0.76151 0.75081 1.20801 1.21484 1.21585 1.23229 0.97720 0.95528 0.91342 0.95768 0.91645 0.90689 0.91418 0.91489 0.95841 0.94887 0.90970 0.91211 0.91272 0.91653 0.95209 0.95094 0.91903 0.92187 0.92798 0.91485 0.91873 0.94625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.32 60.06 0.56 0.77 16 2 N -0.55 -6.14 5.02 -251.26 -1.26 -7.40 16 3 C 0.02 0.22 9.57 60.06 0.57 0.79 16 4 C 0.06 0.65 4.96 -3.82 -0.02 0.63 16 5 C -0.11 -1.48 5.19 -26.73 -0.14 -1.62 16 6 C 0.05 0.77 4.76 -3.82 -0.02 0.76 16 7 N -0.52 -10.13 5.27 -230.45 -1.21 -11.35 16 8 C 0.04 0.77 5.79 -2.75 -0.02 0.76 16 9 C -0.12 -2.87 5.34 -25.37 -0.14 -3.00 16 10 C 0.04 0.93 2.62 -89.91 -0.24 0.69 16 11 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 12 C -0.60 -16.84 8.42 -34.44 -0.29 -17.13 16 13 H 0.05 1.35 7.78 -52.48 -0.41 0.94 16 14 C 0.02 0.58 5.33 -17.82 -0.10 0.48 16 15 N -0.91 -27.46 13.42 55.43 0.74 -26.71 16 16 Si 1.07 25.20 29.90 -169.99 -5.08 20.11 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 20 C 0.05 1.07 5.95 -1.90 -0.01 1.06 16 21 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 22 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 23 H 0.07 0.78 6.47 -51.92 -0.34 0.45 16 24 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 25 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 26 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 27 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 28 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 29 H 0.07 1.02 7.52 -51.93 -0.39 0.63 16 30 H 0.07 0.96 6.55 -51.93 -0.34 0.62 16 31 H 0.06 0.97 8.11 -51.92 -0.42 0.55 16 32 H 0.03 0.47 7.82 -51.93 -0.41 0.07 16 33 H 0.03 0.58 7.57 -51.93 -0.39 0.19 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.06 1.52 7.84 -51.93 -0.41 1.11 16 36 H 0.05 1.30 6.97 -51.93 -0.36 0.94 16 37 H 0.27 8.15 5.53 -40.82 -0.23 7.92 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.04 0.79 7.92 -51.93 -0.41 0.38 16 LS Contribution 303.46 15.07 4.57 4.57 Total: -1.00 -29.86 303.46 -9.18 -39.04 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -7.11 Total: -2.45 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 0.18 Total: -15.82 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: -1.73 Total: -45.46 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.08 Total: 20.11 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.86 -9.18 -39.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106872535.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.699 kcal (2) G-P(sol) polarization free energy of solvation -29.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds