Wall clock time and date at job start Mon Mar 30 2020 03:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 111.00030 * 2 1 4 4 C 1.46903 * 110.99924 * 123.95806 * 2 1 3 5 5 C 1.52997 * 109.47245 * 66.04475 * 4 2 1 6 6 C 1.53002 * 109.47053 * 179.97438 * 5 4 2 7 7 N 1.46903 * 109.47265 * 179.97438 * 6 5 4 8 8 C 1.47904 * 110.99591 * 69.87817 * 7 6 5 9 9 C 1.53991 * 107.05576 * 145.84453 * 8 7 6 10 10 C 1.54598 * 105.14241 * 358.77606 * 9 8 7 11 11 H 1.09002 * 110.72748 * 96.57570 * 10 9 8 12 12 C 1.50698 * 110.72131 * 219.68625 * 10 9 8 13 13 H 1.08005 * 119.99819 * 118.54532 * 12 10 9 14 14 C 1.37875 * 120.00046 * 298.53873 * 12 10 9 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 C 1.48531 * 110.99972 * 187.27228 * 7 6 5 21 21 H 1.08999 * 109.47351 * 296.04081 * 1 2 3 22 22 H 1.09002 * 109.47433 * 56.04551 * 1 2 3 23 23 H 1.09007 * 109.47187 * 176.04466 * 1 2 3 24 24 H 1.09000 * 109.47060 * 183.95529 * 3 2 1 25 25 H 1.08994 * 109.47343 * 303.95417 * 3 2 1 26 26 H 1.09001 * 109.47232 * 63.95696 * 3 2 1 27 27 H 1.08994 * 109.46808 * 306.04335 * 4 2 1 28 28 H 1.09002 * 109.46724 * 186.04314 * 4 2 1 29 29 H 1.09001 * 109.46974 * 60.00080 * 5 4 2 30 30 H 1.08998 * 109.46978 * 300.00075 * 5 4 2 31 31 H 1.09008 * 109.46619 * 60.00079 * 6 5 4 32 32 H 1.08998 * 109.47495 * 300.00621 * 6 5 4 33 33 H 1.08993 * 109.92000 * 26.49039 * 8 7 6 34 34 H 1.09003 * 109.91286 * 265.19644 * 8 7 6 35 35 H 1.08995 * 110.30651 * 239.85562 * 9 8 7 36 36 H 1.08999 * 110.31014 * 117.68861 * 9 8 7 37 37 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 38 38 H 1.09003 * 110.66729 * 81.84931 * 20 7 6 39 39 H 1.08993 * 110.66823 * 318.71703 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 1.6314 -2.2427 0.9702 6 6 2.1803 -3.0406 2.1547 7 7 1.8303 -4.4583 1.9944 8 6 2.5889 -5.0689 0.8813 9 6 2.8730 -6.5299 1.2762 10 6 2.2588 -6.6941 2.6854 11 1 1.2616 -7.1298 2.6232 12 6 3.1520 -7.5339 3.5618 13 1 3.5739 -7.1138 4.4628 14 6 3.4304 -8.8385 3.2133 15 7 2.9169 -9.3500 2.1159 16 14 4.5369 -9.8797 4.3001 17 1 4.6782 -11.2347 3.7089 18 1 3.9384 -9.9901 5.6546 19 1 5.8742 -9.2420 4.4003 20 6 2.1930 -5.2364 3.2065 21 1 -0.3634 0.4511 0.9233 22 1 -0.3634 0.5740 -0.8524 23 1 -0.3634 -1.0253 -0.0709 24 1 3.0827 1.3432 -0.0709 25 1 1.5898 1.9163 -0.8524 26 1 1.7044 1.8723 0.9233 27 1 1.5611 -0.3874 2.0627 28 1 3.0797 -0.6612 1.1755 29 1 2.0658 -2.6214 0.0450 30 1 0.5472 -2.3475 0.9322 31 1 1.7462 -2.6619 3.0802 32 1 3.2645 -2.9356 2.1924 33 1 3.5276 -4.5346 0.7345 34 1 1.9953 -5.0399 -0.0325 35 1 3.9474 -6.7110 1.3082 36 1 2.3945 -7.2117 0.5732 37 1 2.3420 -8.8094 1.5518 38 1 1.4240 -5.1362 3.9725 39 1 3.1631 -4.9209 3.5902 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106872535.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:58 Heat of formation + Delta-G solvation = -25.602460 kcal Electronic energy + Delta-G solvation = -15873.625434 eV Core-core repulsion = 13428.664683 eV Total energy + Delta-G solvation = -2444.960751 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.05139 -38.53861 -35.80907 -33.65229 -30.79931 -30.06436 -28.48963 -26.94366 -25.76749 -23.61149 -22.00630 -21.82657 -21.05939 -18.91296 -17.16063 -16.71169 -16.51185 -16.00835 -15.68759 -15.47192 -15.30853 -14.86575 -14.32258 -13.85338 -13.63999 -13.41186 -13.17358 -12.88630 -12.77822 -12.66307 -12.47274 -12.33754 -12.06654 -11.97630 -11.89936 -11.70984 -11.53139 -11.27442 -10.58081 -10.48152 -9.39493 -9.32326 -8.58515 -6.32382 1.53824 1.61631 1.80899 2.57963 2.86787 3.18962 3.24539 3.92906 3.93456 3.99321 4.18247 4.22960 4.32229 4.40574 4.46384 4.49649 4.50025 4.61820 4.65162 4.73857 4.76013 4.78960 4.84576 4.99529 5.01673 5.04261 5.10451 5.18156 5.29396 5.34722 5.60905 5.80604 6.03361 6.09863 6.15165 6.19360 6.24688 6.66184 7.48981 8.80286 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.072395 B = 0.004459 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.672658 B = 6278.020916 C = 6383.570631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.566 5.566 3 C 0.024 3.976 4 C 0.062 3.938 5 C -0.098 4.098 6 C 0.050 3.950 7 N -0.527 5.527 8 C 0.050 3.950 9 C -0.113 4.113 10 C 0.023 3.977 11 H -0.002 1.002 12 C -0.612 4.612 13 H 0.047 0.953 14 C -0.030 4.030 15 N -0.937 5.937 16 Si 1.114 2.886 17 H -0.285 1.285 18 H -0.271 1.271 19 H -0.272 1.272 20 C 0.061 3.939 21 H 0.028 0.972 22 H 0.077 0.923 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.029 0.971 27 H 0.039 0.961 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.033 0.967 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.039 0.961 37 H 0.263 0.737 38 H 0.069 0.931 39 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.673 18.866 -2.471 19.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.290 5.290 3 C -0.124 4.124 4 C -0.067 4.067 5 C -0.136 4.136 6 C -0.079 4.079 7 N -0.251 5.251 8 C -0.078 4.078 9 C -0.152 4.152 10 C 0.004 3.996 11 H 0.016 0.984 12 C -0.650 4.650 13 H 0.065 0.935 14 C -0.228 4.228 15 N -0.574 5.574 16 Si 0.936 3.064 17 H -0.210 1.210 18 H -0.196 1.196 19 H -0.197 1.197 20 C -0.067 4.067 21 H 0.047 0.953 22 H 0.096 0.904 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.096 0.904 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.410 17.162 -2.863 17.456 hybrid contribution -0.220 1.645 0.613 1.769 sum -1.630 18.807 -2.250 19.011 Atomic orbital electron populations 1.22458 0.86805 1.02508 1.00931 1.61956 1.08857 1.14798 1.43382 1.22420 1.01011 0.87884 1.01048 1.22031 1.00267 0.92911 0.91454 1.21404 1.01364 0.93517 0.97341 1.22263 0.98156 0.87872 0.99598 1.64729 1.53752 1.02631 1.03947 1.22779 0.96035 0.93892 0.95066 1.22418 0.99199 0.95114 0.98454 1.19690 0.94443 0.92616 0.92838 0.98394 1.22304 1.32712 0.99790 1.10165 0.93501 1.27225 0.99183 0.97855 0.98570 1.70891 1.32035 1.40432 1.14065 0.82967 0.74793 0.74524 0.74101 1.21033 1.19635 1.19713 1.23001 0.97880 0.93418 0.92363 0.95325 0.90409 0.91593 0.91082 0.90400 0.95286 0.94318 0.90584 0.92217 0.91581 0.90472 0.94917 0.93721 0.90368 0.94368 0.94253 0.92655 0.91233 0.94831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.32 127.69 1.19 1.56 16 2 N -0.57 -11.35 5.02 -948.86 -4.76 -16.11 16 3 C 0.02 0.37 9.57 127.69 1.22 1.59 16 4 C 0.06 1.29 4.96 86.30 0.43 1.72 16 5 C -0.10 -2.46 5.19 30.59 0.16 -2.30 16 6 C 0.05 1.46 4.76 86.30 0.41 1.87 16 7 N -0.53 -19.71 5.27 -883.01 -4.65 -24.36 16 8 C 0.05 1.94 5.79 86.44 0.50 2.44 16 9 C -0.11 -5.45 5.34 31.47 0.17 -5.28 16 10 C 0.02 1.21 2.62 -10.33 -0.03 1.19 16 11 H 0.00 -0.12 8.08 -2.39 -0.02 -0.14 16 12 C -0.61 -34.89 8.42 25.60 0.22 -34.67 16 13 H 0.05 2.62 7.78 -2.91 -0.02 2.60 16 14 C -0.03 -1.71 5.33 84.65 0.45 -1.26 16 15 N -0.94 -57.60 13.42 21.45 0.29 -57.31 16 16 Si 1.11 50.45 29.90 68.60 2.05 52.51 16 17 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 18 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 20 C 0.06 2.63 5.95 86.65 0.52 3.14 16 21 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 22 H 0.08 1.16 8.12 -2.39 -0.02 1.14 16 23 H 0.07 1.27 6.47 -2.38 -0.02 1.26 16 24 H 0.07 1.03 8.12 -2.39 -0.02 1.01 16 25 H 0.08 1.02 8.12 -2.39 -0.02 1.00 16 26 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.04 0.77 8.12 -2.39 -0.02 0.75 16 28 H 0.08 1.53 8.06 -2.39 -0.02 1.51 16 29 H 0.06 1.63 7.52 -2.39 -0.02 1.61 16 30 H 0.07 1.71 6.55 -2.39 -0.02 1.69 16 31 H 0.08 2.10 8.11 -2.38 -0.02 2.08 16 32 H 0.03 0.96 7.82 -2.39 -0.02 0.94 16 33 H 0.04 1.61 7.57 -2.39 -0.02 1.59 16 34 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 35 H 0.04 1.96 7.84 -2.39 -0.02 1.94 16 36 H 0.04 1.96 6.97 -2.39 -0.02 1.94 16 37 H 0.26 16.23 5.53 -92.71 -0.51 15.72 16 38 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 39 H 0.03 1.45 7.92 -2.39 -0.02 1.43 16 Total: -1.00 -63.84 303.46 -0.61 -64.44 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 1.23 Total: 10.85 kcal Atomic # 6 Polarization: -35.24 SS G_CDS: 5.23 Total: -30.01 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -9.12 Total: -97.79 kcal Atomic # 14 Polarization: 50.45 SS G_CDS: 2.05 Total: 52.51 kcal Total: -63.84 -0.61 -64.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106872535.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.839 kcal (2) G-P(sol) polarization free energy of solvation -63.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds