Wall clock time and date at job start Mon Mar 30 2020 03:26:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46898 * 1
3 3 C 1.46897 * 111.00030 * 2 1
4 4 C 1.46903 * 110.99924 * 123.95806 * 2 1 3
5 5 C 1.52997 * 109.47245 * 66.04475 * 4 2 1
6 6 C 1.53002 * 109.47053 * 179.97438 * 5 4 2
7 7 N 1.46903 * 109.47265 * 179.97438 * 6 5 4
8 8 C 1.47904 * 110.99591 * 69.87817 * 7 6 5
9 9 C 1.53991 * 107.05576 * 145.84453 * 8 7 6
10 10 C 1.54598 * 105.14241 * 358.77606 * 9 8 7
11 11 H 1.09002 * 110.72748 * 96.57570 * 10 9 8
12 12 C 1.50698 * 110.72131 * 219.68625 * 10 9 8
13 13 H 1.08005 * 119.99819 * 118.54532 * 12 10 9
14 14 C 1.37875 * 120.00046 * 298.53873 * 12 10 9
15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 10
16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 10
17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12
18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12
19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12
20 20 C 1.48531 * 110.99972 * 187.27228 * 7 6 5
21 21 H 1.08999 * 109.47351 * 296.04081 * 1 2 3
22 22 H 1.09002 * 109.47433 * 56.04551 * 1 2 3
23 23 H 1.09007 * 109.47187 * 176.04466 * 1 2 3
24 24 H 1.09000 * 109.47060 * 183.95529 * 3 2 1
25 25 H 1.08994 * 109.47343 * 303.95417 * 3 2 1
26 26 H 1.09001 * 109.47232 * 63.95696 * 3 2 1
27 27 H 1.08994 * 109.46808 * 306.04335 * 4 2 1
28 28 H 1.09002 * 109.46724 * 186.04314 * 4 2 1
29 29 H 1.09001 * 109.46974 * 60.00080 * 5 4 2
30 30 H 1.08998 * 109.46978 * 300.00075 * 5 4 2
31 31 H 1.09008 * 109.46619 * 60.00079 * 6 5 4
32 32 H 1.08998 * 109.47495 * 300.00621 * 6 5 4
33 33 H 1.08993 * 109.92000 * 26.49039 * 8 7 6
34 34 H 1.09003 * 109.91286 * 265.19644 * 8 7 6
35 35 H 1.08995 * 110.30651 * 239.85562 * 9 8 7
36 36 H 1.08999 * 110.31014 * 117.68861 * 9 8 7
37 37 H 0.97001 * 119.99934 * 359.97438 * 15 14 12
38 38 H 1.09003 * 110.66729 * 81.84931 * 20 7 6
39 39 H 1.08993 * 110.66823 * 318.71703 * 20 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.9954 -0.7661 1.1376
5 6 1.6314 -2.2427 0.9702
6 6 2.1803 -3.0406 2.1547
7 7 1.8303 -4.4583 1.9944
8 6 2.5889 -5.0689 0.8813
9 6 2.8730 -6.5299 1.2762
10 6 2.2588 -6.6941 2.6854
11 1 1.2616 -7.1298 2.6232
12 6 3.1520 -7.5339 3.5618
13 1 3.5739 -7.1138 4.4628
14 6 3.4304 -8.8385 3.2133
15 7 2.9169 -9.3500 2.1159
16 14 4.5369 -9.8797 4.3001
17 1 4.6782 -11.2347 3.7089
18 1 3.9384 -9.9901 5.6546
19 1 5.8742 -9.2420 4.4003
20 6 2.1930 -5.2364 3.2065
21 1 -0.3634 0.4511 0.9233
22 1 -0.3634 0.5740 -0.8524
23 1 -0.3634 -1.0253 -0.0709
24 1 3.0827 1.3432 -0.0709
25 1 1.5898 1.9163 -0.8524
26 1 1.7044 1.8723 0.9233
27 1 1.5611 -0.3874 2.0627
28 1 3.0797 -0.6612 1.1755
29 1 2.0658 -2.6214 0.0450
30 1 0.5472 -2.3475 0.9322
31 1 1.7462 -2.6619 3.0802
32 1 3.2645 -2.9356 2.1924
33 1 3.5276 -4.5346 0.7345
34 1 1.9953 -5.0399 -0.0325
35 1 3.9474 -6.7110 1.3082
36 1 2.3945 -7.2117 0.5732
37 1 2.3420 -8.8094 1.5518
38 1 1.4240 -5.1362 3.9725
39 1 3.1631 -4.9209 3.5902
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000106872535.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:26:58
Heat of formation + Delta-G solvation = -25.602460 kcal
Electronic energy + Delta-G solvation = -15873.625434 eV
Core-core repulsion = 13428.664683 eV
Total energy + Delta-G solvation = -2444.960751 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.05139 -38.53861 -35.80907 -33.65229 -30.79931 -30.06436 -28.48963 -26.94366
-25.76749 -23.61149 -22.00630 -21.82657 -21.05939 -18.91296 -17.16063 -16.71169
-16.51185 -16.00835 -15.68759 -15.47192 -15.30853 -14.86575 -14.32258 -13.85338
-13.63999 -13.41186 -13.17358 -12.88630 -12.77822 -12.66307 -12.47274 -12.33754
-12.06654 -11.97630 -11.89936 -11.70984 -11.53139 -11.27442 -10.58081 -10.48152
-9.39493 -9.32326 -8.58515 -6.32382 1.53824 1.61631 1.80899 2.57963
2.86787 3.18962 3.24539 3.92906 3.93456 3.99321 4.18247 4.22960
4.32229 4.40574 4.46384 4.49649 4.50025 4.61820 4.65162 4.73857
4.76013 4.78960 4.84576 4.99529 5.01673 5.04261 5.10451 5.18156
5.29396 5.34722 5.60905 5.80604 6.03361 6.09863 6.15165 6.19360
6.24688 6.66184 7.48981 8.80286
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.072395 B = 0.004459 C = 0.004385
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 386.672658 B = 6278.020916 C = 6383.570631
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.021 3.979
2 N -0.566 5.566
3 C 0.024 3.976
4 C 0.062 3.938
5 C -0.098 4.098
6 C 0.050 3.950
7 N -0.527 5.527
8 C 0.050 3.950
9 C -0.113 4.113
10 C 0.023 3.977
11 H -0.002 1.002
12 C -0.612 4.612
13 H 0.047 0.953
14 C -0.030 4.030
15 N -0.937 5.937
16 Si 1.114 2.886
17 H -0.285 1.285
18 H -0.271 1.271
19 H -0.272 1.272
20 C 0.061 3.939
21 H 0.028 0.972
22 H 0.077 0.923
23 H 0.065 0.935
24 H 0.070 0.930
25 H 0.077 0.923
26 H 0.029 0.971
27 H 0.039 0.961
28 H 0.076 0.924
29 H 0.059 0.941
30 H 0.066 0.934
31 H 0.077 0.923
32 H 0.033 0.967
33 H 0.044 0.956
34 H 0.078 0.922
35 H 0.037 0.963
36 H 0.039 0.961
37 H 0.263 0.737
38 H 0.069 0.931
39 H 0.033 0.967
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.673 18.866 -2.471 19.100
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 N -0.290 5.290
3 C -0.124 4.124
4 C -0.067 4.067
5 C -0.136 4.136
6 C -0.079 4.079
7 N -0.251 5.251
8 C -0.078 4.078
9 C -0.152 4.152
10 C 0.004 3.996
11 H 0.016 0.984
12 C -0.650 4.650
13 H 0.065 0.935
14 C -0.228 4.228
15 N -0.574 5.574
16 Si 0.936 3.064
17 H -0.210 1.210
18 H -0.196 1.196
19 H -0.197 1.197
20 C -0.067 4.067
21 H 0.047 0.953
22 H 0.096 0.904
23 H 0.084 0.916
24 H 0.089 0.911
25 H 0.096 0.904
26 H 0.047 0.953
27 H 0.057 0.943
28 H 0.094 0.906
29 H 0.078 0.922
30 H 0.084 0.916
31 H 0.095 0.905
32 H 0.051 0.949
33 H 0.063 0.937
34 H 0.096 0.904
35 H 0.056 0.944
36 H 0.057 0.943
37 H 0.073 0.927
38 H 0.088 0.912
39 H 0.052 0.948
Dipole moment (debyes) X Y Z Total
from point charges -1.410 17.162 -2.863 17.456
hybrid contribution -0.220 1.645 0.613 1.769
sum -1.630 18.807 -2.250 19.011
Atomic orbital electron populations
1.22458 0.86805 1.02508 1.00931 1.61956 1.08857 1.14798 1.43382
1.22420 1.01011 0.87884 1.01048 1.22031 1.00267 0.92911 0.91454
1.21404 1.01364 0.93517 0.97341 1.22263 0.98156 0.87872 0.99598
1.64729 1.53752 1.02631 1.03947 1.22779 0.96035 0.93892 0.95066
1.22418 0.99199 0.95114 0.98454 1.19690 0.94443 0.92616 0.92838
0.98394 1.22304 1.32712 0.99790 1.10165 0.93501 1.27225 0.99183
0.97855 0.98570 1.70891 1.32035 1.40432 1.14065 0.82967 0.74793
0.74524 0.74101 1.21033 1.19635 1.19713 1.23001 0.97880 0.93418
0.92363 0.95325 0.90409 0.91593 0.91082 0.90400 0.95286 0.94318
0.90584 0.92217 0.91581 0.90472 0.94917 0.93721 0.90368 0.94368
0.94253 0.92655 0.91233 0.94831
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.37 9.32 127.69 1.19 1.56 16
2 N -0.57 -11.35 5.02 -948.86 -4.76 -16.11 16
3 C 0.02 0.37 9.57 127.69 1.22 1.59 16
4 C 0.06 1.29 4.96 86.30 0.43 1.72 16
5 C -0.10 -2.46 5.19 30.59 0.16 -2.30 16
6 C 0.05 1.46 4.76 86.30 0.41 1.87 16
7 N -0.53 -19.71 5.27 -883.01 -4.65 -24.36 16
8 C 0.05 1.94 5.79 86.44 0.50 2.44 16
9 C -0.11 -5.45 5.34 31.47 0.17 -5.28 16
10 C 0.02 1.21 2.62 -10.33 -0.03 1.19 16
11 H 0.00 -0.12 8.08 -2.39 -0.02 -0.14 16
12 C -0.61 -34.89 8.42 25.60 0.22 -34.67 16
13 H 0.05 2.62 7.78 -2.91 -0.02 2.60 16
14 C -0.03 -1.71 5.33 84.65 0.45 -1.26 16
15 N -0.94 -57.60 13.42 21.45 0.29 -57.31 16
16 Si 1.11 50.45 29.90 68.60 2.05 52.51 16
17 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16
18 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16
19 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16
20 C 0.06 2.63 5.95 86.65 0.52 3.14 16
21 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16
22 H 0.08 1.16 8.12 -2.39 -0.02 1.14 16
23 H 0.07 1.27 6.47 -2.38 -0.02 1.26 16
24 H 0.07 1.03 8.12 -2.39 -0.02 1.01 16
25 H 0.08 1.02 8.12 -2.39 -0.02 1.00 16
26 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16
27 H 0.04 0.77 8.12 -2.39 -0.02 0.75 16
28 H 0.08 1.53 8.06 -2.39 -0.02 1.51 16
29 H 0.06 1.63 7.52 -2.39 -0.02 1.61 16
30 H 0.07 1.71 6.55 -2.39 -0.02 1.69 16
31 H 0.08 2.10 8.11 -2.38 -0.02 2.08 16
32 H 0.03 0.96 7.82 -2.39 -0.02 0.94 16
33 H 0.04 1.61 7.57 -2.39 -0.02 1.59 16
34 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16
35 H 0.04 1.96 7.84 -2.39 -0.02 1.94 16
36 H 0.04 1.96 6.97 -2.39 -0.02 1.94 16
37 H 0.26 16.23 5.53 -92.71 -0.51 15.72 16
38 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16
39 H 0.03 1.45 7.92 -2.39 -0.02 1.43 16
Total: -1.00 -63.84 303.46 -0.61 -64.44
By element:
Atomic # 1 Polarization: 9.62 SS G_CDS: 1.23 Total: 10.85 kcal
Atomic # 6 Polarization: -35.24 SS G_CDS: 5.23 Total: -30.01 kcal
Atomic # 7 Polarization: -88.67 SS G_CDS: -9.12 Total: -97.79 kcal
Atomic # 14 Polarization: 50.45 SS G_CDS: 2.05 Total: 52.51 kcal
Total: -63.84 -0.61 -64.44 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000106872535.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.839 kcal
(2) G-P(sol) polarization free energy of solvation -63.835 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.997 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.606 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.441 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.602 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds