Wall clock time and date at job start Mon Mar 30 2020 03:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86801 * 120.00454 * 2 1 4 4 H 1.48494 * 109.47337 * 270.00629 * 3 2 1 5 5 H 1.48502 * 109.46686 * 30.00320 * 3 2 1 6 6 H 1.48500 * 109.47406 * 150.00038 * 3 2 1 7 7 C 1.38661 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00079 * 0.02562 * 7 2 1 9 9 O 1.34834 * 119.99777 * 179.97438 * 7 2 1 10 10 C 1.35749 * 116.99733 * 185.06531 * 9 7 2 11 11 C 1.38912 * 120.06095 * 354.40193 * 10 9 7 12 12 C 1.38087 * 119.95489 * 180.02562 * 11 10 9 13 13 C 1.38307 * 120.08070 * 0.04024 * 12 11 10 14 14 C 1.38396 * 120.12414 * 359.97438 * 13 12 11 15 15 Cl 1.73608 * 119.97579 * 179.97438 * 14 13 12 16 16 C 1.38234 * 120.04781 * 0.02562 * 14 13 12 17 17 C 1.50694 * 120.04545 * 179.72559 * 16 14 13 18 18 N 1.46898 * 109.47329 * 89.99674 * 17 16 14 19 19 H 0.97003 * 119.99554 * 359.97438 * 1 2 3 20 20 H 1.07993 * 120.02330 * 0.04208 * 11 10 9 21 21 H 1.08001 * 119.95930 * 180.02562 * 12 11 10 22 22 H 1.07999 * 119.93429 * 179.97438 * 13 12 11 23 23 H 1.08999 * 109.47251 * 209.99924 * 17 16 14 24 24 H 1.09012 * 109.46938 * 329.99557 * 17 16 14 25 25 H 1.00894 * 111.00357 * 56.04682 * 18 17 16 26 26 H 1.00899 * 110.99777 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 -0.0005 8 1 1.4688 -2.1361 -0.0014 9 8 3.3571 -1.2008 -0.0011 10 6 3.9733 -2.4057 -0.1084 11 6 3.2231 -3.5747 -0.0942 12 6 3.8522 -4.7991 -0.2030 13 6 5.2284 -4.8629 -0.3251 14 6 5.9791 -3.7003 -0.3393 15 17 7.7064 -3.7850 -0.4922 16 6 5.3547 -2.4718 -0.2308 17 6 6.1727 -1.2063 -0.2400 18 7 6.3244 -0.7313 -1.6217 19 1 -0.4850 0.8401 0.0004 20 1 2.1485 -3.5259 0.0015 21 1 3.2689 -5.7080 -0.1924 22 1 5.7180 -5.8218 -0.4096 23 1 5.6685 -0.4434 0.3532 24 1 7.1562 -1.4062 0.1856 25 1 5.4251 -0.6002 -2.0599 26 1 6.8701 0.1168 -1.6547 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127381954.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:19 Heat of formation + Delta-G solvation = -31.571687 kcal Electronic energy + Delta-G solvation = -13472.940302 eV Core-core repulsion = 10963.211926 eV Total energy + Delta-G solvation = -2509.728377 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.045 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.14552 -38.66201 -37.10667 -35.72669 -34.45681 -31.39309 -30.72430 -27.37986 -25.85690 -23.27383 -22.28776 -19.88715 -19.03433 -17.38672 -16.93344 -16.40139 -16.01668 -15.78131 -15.66967 -15.11498 -14.57277 -14.28515 -14.04771 -13.80835 -13.29857 -12.86751 -12.66357 -12.51987 -12.13274 -12.03504 -11.74779 -11.29258 -10.93680 -9.77804 -9.53131 -9.16672 -8.52737 -6.25448 0.26648 0.50601 1.17436 1.30043 1.32204 1.47543 2.23531 2.63868 2.94971 3.08885 3.76822 3.89953 4.08078 4.20207 4.46009 4.55907 4.64887 4.70270 5.03943 5.30943 5.34739 5.55720 5.65471 5.76049 6.04687 6.12817 6.57359 6.81339 7.50753 8.58450 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.035702 B = 0.009408 C = 0.007627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.091575 B = 2975.425601 C = 3670.508377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.016 3.984 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.264 1.264 7 C -0.398 4.398 8 H 0.085 0.915 9 O -0.231 6.231 10 C 0.141 3.859 11 C -0.234 4.234 12 C -0.057 4.057 13 C -0.178 4.178 14 C 0.021 3.979 15 Cl -0.055 7.055 16 C -0.156 4.156 17 C 0.116 3.884 18 N -0.837 5.837 19 H 0.285 0.715 20 H 0.120 0.880 21 H 0.157 0.843 22 H 0.156 0.844 23 H 0.021 0.979 24 H 0.092 0.908 25 H 0.338 0.662 26 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.959 -4.877 -0.778 12.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.788 3.212 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.188 1.188 7 C -0.474 4.474 8 H 0.103 0.897 9 O -0.137 6.137 10 C 0.091 3.909 11 C -0.253 4.253 12 C -0.075 4.075 13 C -0.197 4.197 14 C -0.006 4.006 15 Cl -0.026 7.026 16 C -0.158 4.158 17 C -0.014 4.014 18 N -0.367 5.367 19 H 0.095 0.905 20 H 0.138 0.862 21 H 0.174 0.826 22 H 0.173 0.827 23 H 0.039 0.961 24 H 0.110 0.890 25 H 0.149 0.851 26 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 12.405 -5.209 -0.887 13.483 hybrid contribution -0.889 1.433 0.397 1.733 sum 11.516 -3.776 -0.490 12.129 Atomic orbital electron populations 1.69717 1.06879 1.29615 1.49697 1.25192 0.95756 1.01889 0.95487 0.85294 0.78812 0.77762 0.79336 1.18811 1.19630 1.18803 1.20711 0.77836 0.96223 1.52668 0.89718 1.83497 1.21272 1.26598 1.82369 1.19141 0.91566 0.85699 0.94507 1.21457 1.00884 0.92963 1.10045 1.21125 0.94083 0.97091 0.95217 1.21040 0.93509 0.97504 1.07661 1.20445 0.84915 0.93516 1.01763 1.98318 1.09788 1.98439 1.96072 1.18850 0.90254 0.95606 1.11130 1.20380 0.98379 0.92092 0.90540 1.58795 1.22698 1.38617 1.16612 0.90535 0.86197 0.82558 0.82653 0.96120 0.88986 0.85067 0.83609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.05 13.96 21.61 0.30 -52.75 15 2 C 0.02 0.88 5.49 84.84 0.47 1.35 15 3 Si 0.97 43.47 28.62 68.60 1.96 45.43 15 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 15 5 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 6 H -0.26 -11.82 7.11 99.48 0.71 -11.12 15 7 C -0.40 -22.24 9.95 67.92 0.68 -21.57 15 8 H 0.09 4.95 5.44 -2.91 -0.02 4.94 15 9 O -0.23 -11.70 7.63 -22.78 -0.17 -11.87 15 10 C 0.14 6.30 6.62 22.58 0.15 6.45 15 11 C -0.23 -9.66 9.17 22.40 0.21 -9.46 15 12 C -0.06 -1.82 10.04 22.25 0.22 -1.60 15 13 C -0.18 -5.32 9.83 22.32 0.22 -5.10 15 14 C 0.02 0.70 6.31 22.31 0.14 0.84 15 15 Cl -0.06 -1.54 27.30 -2.72 -0.07 -1.61 15 16 C -0.16 -5.97 5.41 -19.72 -0.11 -6.08 15 17 C 0.12 4.03 6.29 85.56 0.54 4.57 15 18 N -0.84 -26.28 9.61 -190.01 -1.83 -28.11 15 19 H 0.28 15.14 8.31 -92.71 -0.77 14.37 15 20 H 0.12 5.36 5.64 -2.91 -0.02 5.34 15 21 H 0.16 3.85 8.06 -2.91 -0.02 3.83 15 22 H 0.16 3.58 8.06 -2.91 -0.02 3.56 15 23 H 0.02 0.79 7.53 -2.39 -0.02 0.77 15 24 H 0.09 2.84 6.91 -2.38 -0.02 2.82 15 25 H 0.34 11.58 8.98 -89.70 -0.81 10.78 15 26 H 0.35 8.96 9.08 -89.70 -0.81 8.14 15 Total: -1.00 -59.94 245.55 2.32 -57.62 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -0.38 Total: 21.89 kcal Atomic # 6 Polarization: -33.11 SS G_CDS: 2.51 Total: -30.60 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -1.52 Total: -80.86 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -0.17 Total: -11.87 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.96 Total: 45.43 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.07 Total: -1.61 kcal Total: -59.94 2.32 -57.62 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127381954.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.050 kcal (2) G-P(sol) polarization free energy of solvation -59.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds