Wall clock time and date at job start Mon Mar 30 2020 03:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86798 * 119.99577 * 2 1 4 4 H 1.48496 * 109.47359 * 240.00014 * 3 2 1 5 5 H 1.48498 * 109.47594 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46858 * 120.00284 * 3 2 1 7 7 C 1.38651 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99588 * 179.97438 * 7 2 1 9 9 O 1.34822 * 119.99939 * 0.27817 * 7 2 1 10 10 C 1.35766 * 117.00004 * 179.72515 * 9 7 2 11 11 C 1.39005 * 120.07862 * 89.99246 * 10 9 7 12 12 Cl 1.73601 * 120.04277 * 0.02562 * 11 10 9 13 13 C 1.38176 * 119.91166 * 179.97438 * 11 10 9 14 14 C 1.38316 * 120.05544 * 0.02562 * 13 11 10 15 15 C 1.38282 * 120.14627 * 359.97438 * 14 13 11 16 16 C 1.38139 * 120.09409 * 359.79426 * 15 14 13 17 17 C 1.50695 * 120.02976 * 180.23424 * 16 15 14 18 18 N 1.46895 * 109.47036 * 260.22436 * 17 16 15 19 19 H 0.96996 * 120.00423 * 359.97438 * 1 2 3 20 20 H 1.08004 * 119.97413 * 179.97438 * 13 11 10 21 21 H 1.07997 * 119.92758 * 180.02562 * 14 13 11 22 22 H 1.08000 * 119.95431 * 180.02562 * 15 14 13 23 23 H 1.09000 * 109.46951 * 20.22451 * 17 16 15 24 24 H 1.08999 * 109.47357 * 140.22747 * 17 16 15 25 25 H 1.00903 * 110.99868 * 56.05078 * 18 17 16 26 26 H 1.00900 * 111.00111 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6966 -1.2125 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3683 -0.0067 10 6 2.0743 -3.5069 -0.0127 11 6 2.4538 -4.0975 1.1871 12 17 1.9823 -3.3804 2.6961 13 6 3.2059 -5.2565 1.1770 14 6 3.5812 -5.8283 -0.0252 15 6 3.2050 -5.2429 -1.2201 16 6 2.4490 -4.0867 -1.2172 17 6 2.0353 -3.4528 -2.5202 18 7 2.9319 -2.3298 -2.8248 19 1 -0.4850 0.8400 0.0004 20 1 3.5017 -5.7160 2.1086 21 1 4.1687 -6.7345 -0.0307 22 1 3.4994 -5.6922 -2.1571 23 1 2.0948 -4.1922 -3.3189 24 1 1.0114 -3.0882 -2.4381 25 1 3.8949 -2.6305 -2.8426 26 1 2.6753 -1.8879 -3.6949 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159162862.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:42 Heat of formation + Delta-G solvation = -4.304139 kcal Electronic energy + Delta-G solvation = -13633.053468 eV Core-core repulsion = 11124.507501 eV Total energy + Delta-G solvation = -2508.545967 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.045 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.22222 -36.18081 -35.69177 -34.05371 -31.71889 -29.92038 -28.95174 -24.80130 -24.25406 -21.76033 -20.63820 -17.82182 -16.60372 -15.73811 -15.55823 -14.85846 -14.27584 -13.92196 -13.75611 -13.13902 -12.64721 -12.39878 -11.98733 -11.69007 -11.28755 -10.98681 -10.81845 -10.69847 -10.27992 -10.23804 -9.83728 -9.46385 -8.23962 -8.01232 -7.94320 -7.72929 -5.85660 -3.49994 1.68131 1.84587 2.96893 3.40885 3.41743 3.44826 4.05367 4.47866 5.17779 5.19705 5.37234 5.41225 5.50068 5.62510 5.78752 5.89535 6.13304 6.52349 6.56331 6.72178 6.79055 7.10711 7.33639 7.64692 7.74558 8.02342 8.51456 9.58362 10.19211 11.34494 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.024954 B = 0.012336 C = 0.009235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.792641 B = 2269.250877 C = 3031.217713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.028 3.972 3 Si 0.927 3.073 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.280 1.280 7 C -0.317 4.317 8 H 0.066 0.934 9 O -0.225 6.225 10 C 0.175 3.825 11 C -0.071 4.071 12 Cl -0.062 7.062 13 C -0.106 4.106 14 C -0.146 4.146 15 C -0.106 4.106 16 C -0.114 4.114 17 C 0.121 3.879 18 N -0.822 5.822 19 H 0.257 0.743 20 H 0.123 0.877 21 H 0.121 0.879 22 H 0.116 0.884 23 H 0.018 0.982 24 H 0.088 0.912 25 H 0.329 0.671 26 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.800 -8.968 -2.387 11.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.170 4.170 3 Si 0.754 3.246 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.206 1.206 7 C -0.393 4.393 8 H 0.084 0.916 9 O -0.138 6.138 10 C 0.127 3.873 11 C -0.098 4.098 12 Cl -0.033 7.033 13 C -0.125 4.125 14 C -0.165 4.165 15 C -0.125 4.125 16 C -0.115 4.115 17 C -0.009 4.009 18 N -0.351 5.351 19 H 0.066 0.934 20 H 0.141 0.859 21 H 0.139 0.861 22 H 0.134 0.866 23 H 0.036 0.964 24 H 0.107 0.893 25 H 0.140 0.860 26 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.114 -8.413 -1.587 10.520 hybrid contribution 0.844 0.225 -0.684 1.109 sum 6.958 -8.187 -2.271 10.982 Atomic orbital electron populations 1.70012 1.05266 1.25857 1.52539 1.24831 0.95582 0.97329 0.99236 0.86012 0.78458 0.81714 0.78399 1.20231 1.21247 1.20613 1.20564 0.89785 0.79760 1.49240 0.91576 1.83827 1.28925 1.09478 1.91544 1.18775 0.88708 0.90550 0.89238 1.21752 1.02709 0.97358 0.87975 1.98337 1.90998 1.83696 1.30313 1.20864 0.98465 0.94619 0.98593 1.20784 1.03032 1.00820 0.91826 1.20913 0.98213 0.95557 0.97784 1.20266 0.99502 0.96302 0.95441 1.20408 0.98726 0.90721 0.91020 1.58451 1.05175 1.30866 1.40579 0.93355 0.85856 0.86125 0.86561 0.96367 0.89322 0.85980 0.85076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.65 13.67 55.48 0.76 -26.89 15 2 C 0.03 0.80 5.49 -17.51 -0.10 0.70 15 3 Si 0.93 22.53 29.55 -169.99 -5.02 17.51 15 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 7 C -0.32 -8.98 9.44 30.88 0.29 -8.69 15 8 H 0.07 1.87 7.76 -52.49 -0.41 1.46 15 9 O -0.23 -6.28 8.39 0.02 0.00 -6.28 15 10 C 0.17 4.06 5.56 -39.08 -0.22 3.84 15 11 C -0.07 -1.48 6.34 -39.32 -0.25 -1.73 15 12 Cl -0.06 -1.33 28.51 -51.86 -1.48 -2.81 15 13 C -0.11 -1.80 9.82 -39.58 -0.39 -2.19 15 14 C -0.15 -2.19 10.04 -39.54 -0.40 -2.59 15 15 C -0.11 -1.68 9.66 -39.60 -0.38 -2.06 15 16 C -0.11 -2.22 5.41 -104.44 -0.56 -2.78 15 17 C 0.12 2.22 6.56 -4.98 -0.03 2.18 15 18 N -0.82 -14.63 9.25 -11.41 -0.11 -14.73 15 19 H 0.26 7.52 8.31 -40.82 -0.34 7.18 15 20 H 0.12 1.76 8.06 -52.48 -0.42 1.34 15 21 H 0.12 1.39 8.06 -52.49 -0.42 0.97 15 22 H 0.12 1.48 8.04 -52.49 -0.42 1.06 15 23 H 0.02 0.27 8.01 -51.93 -0.42 -0.14 15 24 H 0.09 1.89 7.86 -51.93 -0.41 1.48 15 25 H 0.33 5.13 8.99 -39.29 -0.35 4.77 15 26 H 0.34 5.22 9.08 -39.29 -0.36 4.86 15 LS Contribution 253.16 15.07 3.82 3.82 Total: -1.00 -32.22 253.16 -6.41 -38.64 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -2.34 Total: 4.06 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -2.04 Total: -13.31 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.65 Total: -41.62 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: 0.00 Total: -6.28 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -1.48 Total: -2.81 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -32.22 -6.41 -38.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159162862.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.333 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds