Wall clock time and date at job start Mon Mar 30 2020 03:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86798 * 119.99577 * 2 1 4 4 H 1.48496 * 109.47359 * 240.00014 * 3 2 1 5 5 H 1.48498 * 109.47594 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46858 * 120.00284 * 3 2 1 7 7 C 1.38651 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99588 * 179.97438 * 7 2 1 9 9 O 1.34822 * 119.99939 * 0.27817 * 7 2 1 10 10 C 1.35766 * 117.00004 * 179.72515 * 9 7 2 11 11 C 1.39005 * 120.07862 * 89.99246 * 10 9 7 12 12 Cl 1.73601 * 120.04277 * 0.02562 * 11 10 9 13 13 C 1.38176 * 119.91166 * 179.97438 * 11 10 9 14 14 C 1.38316 * 120.05544 * 0.02562 * 13 11 10 15 15 C 1.38282 * 120.14627 * 359.97438 * 14 13 11 16 16 C 1.38139 * 120.09409 * 359.79426 * 15 14 13 17 17 C 1.50695 * 120.02976 * 180.23424 * 16 15 14 18 18 N 1.46895 * 109.47036 * 260.22436 * 17 16 15 19 19 H 0.96996 * 120.00423 * 359.97438 * 1 2 3 20 20 H 1.08004 * 119.97413 * 179.97438 * 13 11 10 21 21 H 1.07997 * 119.92758 * 180.02562 * 14 13 11 22 22 H 1.08000 * 119.95431 * 180.02562 * 15 14 13 23 23 H 1.09000 * 109.46951 * 20.22451 * 17 16 15 24 24 H 1.08999 * 109.47357 * 140.22747 * 17 16 15 25 25 H 1.00903 * 110.99868 * 56.05078 * 18 17 16 26 26 H 1.00900 * 111.00111 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6966 -1.2125 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3683 -0.0067 10 6 2.0743 -3.5069 -0.0127 11 6 2.4538 -4.0975 1.1871 12 17 1.9823 -3.3804 2.6961 13 6 3.2059 -5.2565 1.1770 14 6 3.5812 -5.8283 -0.0252 15 6 3.2050 -5.2429 -1.2201 16 6 2.4490 -4.0867 -1.2172 17 6 2.0353 -3.4528 -2.5202 18 7 2.9319 -2.3298 -2.8248 19 1 -0.4850 0.8400 0.0004 20 1 3.5017 -5.7160 2.1086 21 1 4.1687 -6.7345 -0.0307 22 1 3.4994 -5.6922 -2.1571 23 1 2.0948 -4.1922 -3.3189 24 1 1.0114 -3.0882 -2.4381 25 1 3.8949 -2.6305 -2.8426 26 1 2.6753 -1.8879 -3.6949 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159162862.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:41 Heat of formation + Delta-G solvation = -27.524077 kcal Electronic energy + Delta-G solvation = -13634.060360 eV Core-core repulsion = 11124.507501 eV Total energy + Delta-G solvation = -2509.552859 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.045 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.76214 -37.95601 -37.26513 -35.47477 -33.83370 -31.31297 -30.49550 -26.81421 -25.78402 -23.25227 -22.08774 -19.77980 -18.35648 -17.27204 -17.08547 -16.32892 -16.00632 -15.59690 -15.22117 -14.83855 -14.00831 -13.94943 -13.54364 -13.37631 -13.29673 -12.66403 -12.40470 -12.23528 -12.12400 -11.93107 -11.60578 -11.35391 -10.15081 -9.64404 -9.29739 -9.27976 -8.03027 -5.69863 0.28537 0.39619 1.41481 1.43615 1.49769 1.55400 2.39191 2.74247 3.32391 3.77739 3.87376 3.99566 4.12635 4.33289 4.48699 4.56893 4.74932 4.98647 5.12938 5.35102 5.39222 5.44728 5.65961 5.96929 6.34375 6.43681 6.80152 7.41360 8.20133 9.20600 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.024954 B = 0.012336 C = 0.009235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.792641 B = 2269.250877 C = 3031.217713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.036 4.036 3 Si 0.991 3.009 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.298 4.298 8 H 0.059 0.941 9 O -0.261 6.261 10 C 0.116 3.884 11 C -0.093 4.093 12 Cl -0.082 7.082 13 C -0.104 4.104 14 C -0.123 4.123 15 C -0.093 4.093 16 C -0.125 4.125 17 C 0.127 3.873 18 N -0.842 5.842 19 H 0.255 0.745 20 H 0.152 0.848 21 H 0.172 0.828 22 H 0.160 0.840 23 H 0.059 0.941 24 H 0.044 0.956 25 H 0.342 0.658 26 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.292 -10.926 -3.241 14.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.228 4.228 3 Si 0.816 3.184 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.375 4.375 8 H 0.077 0.923 9 O -0.174 6.174 10 C 0.070 3.930 11 C -0.120 4.120 12 Cl -0.053 7.053 13 C -0.123 4.123 14 C -0.141 4.141 15 C -0.112 4.112 16 C -0.126 4.126 17 C -0.004 4.004 18 N -0.374 5.374 19 H 0.063 0.937 20 H 0.169 0.831 21 H 0.189 0.811 22 H 0.177 0.823 23 H 0.077 0.923 24 H 0.062 0.938 25 H 0.155 0.845 26 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.639 -10.402 -2.449 13.742 hybrid contribution 0.175 0.596 -0.446 0.765 sum 8.814 -9.806 -2.895 13.499 Atomic orbital electron populations 1.70176 1.07128 1.26497 1.55254 1.25823 0.96432 1.00887 0.99652 0.85013 0.77284 0.77242 0.78905 1.18886 1.21023 1.19900 1.20662 0.89322 0.80762 1.46786 0.92280 1.83814 1.31021 1.10588 1.91963 1.19255 0.92037 0.90189 0.91534 1.21963 1.04369 0.99007 0.86635 1.98318 1.91395 1.84340 1.31270 1.21263 0.96956 0.93031 1.01008 1.21398 1.01017 1.01314 0.90334 1.21365 0.95995 0.93614 1.00205 1.20470 1.00120 0.97657 0.94342 1.20284 0.96412 0.91606 0.92051 1.58343 1.06045 1.31423 1.41591 0.93676 0.83060 0.81053 0.82267 0.92307 0.93772 0.84453 0.83955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.78 13.67 21.61 0.30 -60.49 15 2 C -0.04 -2.16 5.49 84.83 0.47 -1.69 15 3 Si 0.99 47.08 29.55 68.60 2.03 49.11 15 4 H -0.26 -11.84 7.11 99.48 0.71 -11.13 15 5 H -0.28 -13.27 7.11 99.48 0.71 -12.57 15 6 H -0.27 -12.53 7.11 99.48 0.71 -11.83 15 7 C -0.30 -17.39 9.44 67.92 0.64 -16.75 15 8 H 0.06 3.42 7.76 -2.91 -0.02 3.39 15 9 O -0.26 -15.09 8.39 -22.84 -0.19 -15.28 15 10 C 0.12 5.42 5.56 22.60 0.13 5.55 15 11 C -0.09 -3.83 6.34 22.44 0.14 -3.69 15 12 Cl -0.08 -3.54 28.51 -2.72 -0.08 -3.62 15 13 C -0.10 -3.17 9.82 22.27 0.22 -2.95 15 14 C -0.12 -3.01 10.04 22.30 0.22 -2.78 15 15 C -0.09 -2.52 9.66 22.26 0.22 -2.31 15 16 C -0.12 -4.67 5.41 -19.75 -0.11 -4.78 15 17 C 0.13 4.52 6.56 85.56 0.56 5.09 15 18 N -0.84 -29.29 9.25 -190.02 -1.76 -31.05 15 19 H 0.25 15.53 8.31 -92.71 -0.77 14.75 15 20 H 0.15 3.72 8.06 -2.91 -0.02 3.70 15 21 H 0.17 2.58 8.06 -2.91 -0.02 2.56 15 22 H 0.16 2.98 8.04 -2.91 -0.02 2.96 15 23 H 0.06 1.60 8.01 -2.39 -0.02 1.58 15 24 H 0.04 1.95 7.86 -2.39 -0.02 1.93 15 25 H 0.34 10.03 8.99 -89.69 -0.81 9.22 15 26 H 0.35 10.53 9.08 -89.69 -0.81 9.71 15 Total: -1.00 -73.74 253.16 2.38 -71.35 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -0.40 Total: 14.29 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 2.49 Total: -24.31 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -1.46 Total: -91.54 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.19 Total: -15.28 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Atomic # 17 Polarization: -3.54 SS G_CDS: -0.08 Total: -3.62 kcal Total: -73.74 2.38 -71.35 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159162862.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.829 kcal (2) G-P(sol) polarization free energy of solvation -73.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds