Wall clock time and date at job start Mon Mar 30 2020 03:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47199 * 2 1 4 4 C 1.46899 * 111.00228 * 73.14216 * 3 2 1 5 5 C 1.50696 * 109.47019 * 285.62807 * 4 3 2 6 6 H 1.07996 * 120.00414 * 358.16608 * 5 4 3 7 7 C 1.37879 * 119.99950 * 178.17172 * 5 4 3 8 8 N 1.31514 * 119.99970 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99973 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47279 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47101 * 120.00223 * 9 7 5 12 12 H 1.48508 * 109.47225 * 240.00143 * 9 7 5 13 13 C 1.46901 * 110.99737 * 197.09923 * 3 2 1 14 14 H 1.09005 * 108.73625 * 187.59182 * 13 3 2 15 15 C 1.54259 * 108.99551 * 69.15815 * 13 3 2 16 16 C 1.53814 * 112.03090 * 197.73910 * 15 13 3 17 17 C 1.50815 * 111.61680 * 319.00157 * 16 15 13 18 18 N 1.47622 * 108.03920 * 95.06782 * 17 16 15 19 19 C 1.39784 * 114.76841 * 277.17225 * 18 17 16 20 20 C 1.50754 * 108.85387 * 306.04001 * 13 3 2 21 21 H 1.09000 * 109.47170 * 168.45613 * 1 2 3 22 22 H 1.09004 * 109.47192 * 288.45260 * 1 2 3 23 23 H 1.08997 * 109.47177 * 48.45525 * 1 2 3 24 24 H 1.09005 * 109.47019 * 239.99697 * 2 1 3 25 25 H 1.09007 * 109.47218 * 120.00217 * 2 1 3 26 26 H 1.09010 * 109.46693 * 45.62099 * 4 3 2 27 27 H 1.08995 * 109.47519 * 165.62015 * 4 3 2 28 28 H 0.97000 * 120.00155 * 179.97438 * 8 7 5 29 29 H 1.09002 * 108.99076 * 77.05821 * 15 13 3 30 30 H 1.08998 * 108.91248 * 318.38097 * 15 13 3 31 31 H 1.08998 * 109.05271 * 198.44550 * 16 15 13 32 32 H 1.09009 * 108.98897 * 79.51190 * 16 15 13 33 33 H 1.08993 * 109.74988 * 335.42629 * 17 16 15 34 34 H 1.09007 * 109.74585 * 214.69889 * 17 16 15 35 35 H 1.00898 * 111.00641 * 150.30378 * 18 17 16 36 36 H 1.09004 * 109.01639 * 301.68233 * 19 18 17 37 37 H 1.09002 * 108.96093 * 182.82193 * 19 18 17 38 38 H 1.09006 * 109.53804 * 93.95008 * 20 13 3 39 39 H 1.08998 * 109.54282 * 333.78126 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8202 2.0139 1.3125 5 6 0.3608 2.3419 1.4957 6 1 -0.3430 2.1337 0.7036 7 6 -0.0758 2.9077 2.6748 8 7 0.7813 3.1608 3.6397 9 14 -1.8847 3.3149 2.9017 10 1 -2.6348 2.9361 1.6773 11 1 -2.4197 2.5610 4.0637 12 1 -2.0375 4.7721 3.1441 13 6 3.4310 1.4443 -0.4032 14 1 3.7933 2.4625 -0.2612 15 6 3.5416 1.0821 -1.8986 16 6 4.9769 0.6955 -2.2941 17 6 5.9950 1.5956 -1.6399 18 7 6.4616 0.9358 -0.4045 19 6 5.6323 1.1181 0.7059 20 6 4.2287 0.5162 0.4772 21 1 -0.3633 -1.0069 -0.2057 22 1 -0.3634 0.3253 0.9749 23 1 -0.3633 0.6815 -0.7691 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.1396 1.3273 2.0966 27 1 2.4085 2.9297 1.3697 28 1 0.4742 3.5593 4.4690 29 1 3.2281 1.9389 -2.4952 30 1 2.8777 0.2437 -2.1091 31 1 5.0799 0.7696 -3.3766 32 1 5.1638 -0.3341 -1.9887 33 1 5.5364 2.5536 -1.3952 34 1 6.8367 1.7512 -2.3148 35 1 7.4128 1.1969 -0.1922 36 1 5.5333 2.1855 0.9039 37 1 6.0884 0.6373 1.5713 38 1 4.3231 -0.4552 -0.0082 39 1 3.7223 0.3975 1.4351 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160716896.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:41 Heat of formation + Delta-G solvation = 5.248004 kcal Electronic energy + Delta-G solvation = -16883.668460 eV Core-core repulsion = 14440.045486 eV Total energy + Delta-G solvation = -2443.622974 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.30142 -36.43350 -33.00284 -32.30093 -31.20757 -28.94544 -26.80400 -25.38329 -23.76008 -22.36703 -21.02667 -20.15349 -18.21307 -16.92875 -16.17463 -15.31427 -14.77855 -14.44827 -14.14773 -14.04778 -13.65854 -13.14702 -12.92865 -12.22776 -11.87543 -11.74645 -11.53725 -11.15980 -11.02540 -10.97860 -10.82992 -10.80137 -10.47139 -10.32901 -10.18347 -10.04817 -9.87466 -9.24293 -9.00135 -8.35085 -8.21717 -7.12516 -5.97807 -3.96131 3.32529 3.40305 3.44989 4.36389 4.45224 4.88006 5.10004 5.24845 5.32762 5.36900 5.41453 5.48403 5.75782 5.80402 5.93200 5.94126 5.99162 6.12199 6.25299 6.25629 6.32229 6.38291 6.45425 6.49797 6.62381 6.75944 6.84612 6.97844 7.27698 7.37917 7.43164 7.45442 7.61390 7.90990 8.20154 8.31224 8.64512 9.11017 9.65642 11.12853 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.038335 B = 0.007326 C = 0.006662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.235388 B = 3820.960896 C = 4202.202592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.066 3.934 3 N -0.535 5.535 4 C 0.194 3.806 5 C -0.501 4.501 6 H 0.074 0.926 7 C 0.051 3.949 8 N -0.901 5.901 9 Si 0.893 3.107 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.085 3.915 14 H 0.065 0.935 15 C -0.109 4.109 16 C -0.116 4.116 17 C 0.065 3.935 18 N -0.703 5.703 19 C 0.080 3.920 20 C -0.145 4.145 21 H 0.029 0.971 22 H 0.085 0.915 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.022 0.978 26 H -0.005 1.005 27 H 0.022 0.978 28 H 0.259 0.741 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.065 0.935 35 H 0.339 0.661 36 H 0.017 0.983 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.596 -4.810 -8.584 13.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.063 4.063 3 N -0.259 5.259 4 C 0.069 3.931 5 C -0.540 4.540 6 H 0.092 0.908 7 C -0.149 4.149 8 N -0.541 5.541 9 Si 0.721 3.279 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.024 4.024 14 H 0.083 0.917 15 C -0.147 4.147 16 C -0.155 4.155 17 C -0.063 4.063 18 N -0.335 5.335 19 C -0.052 4.052 20 C -0.185 4.185 21 H 0.048 0.952 22 H 0.103 0.897 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.040 0.960 26 H 0.012 0.988 27 H 0.040 0.960 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.158 0.842 36 H 0.035 0.965 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.975 -5.006 -8.896 12.953 hybrid contribution -0.230 0.774 1.184 1.433 sum 7.744 -4.231 -7.712 11.720 Atomic orbital electron populations 1.22054 0.95404 0.98482 1.04523 1.21854 0.96259 0.89925 0.98225 1.62347 1.14432 1.16073 1.33030 1.19736 0.97290 0.93311 0.82724 1.21477 0.93446 1.38940 1.00148 0.90793 1.25012 0.97630 0.96152 0.96139 1.69976 1.33923 1.44362 1.05833 0.86520 0.85411 0.77965 0.78032 1.19603 1.21206 1.21161 1.21556 0.89291 0.98292 0.93235 0.91661 1.21976 0.95426 1.01447 0.95863 1.21418 0.94466 1.00697 0.98873 1.21664 0.97781 0.95868 0.90968 1.57337 1.05732 1.65079 1.05326 1.20746 0.94295 0.98035 0.92096 1.22227 0.94802 1.00189 1.01274 0.95239 0.89664 0.92767 0.93166 0.95997 0.98761 0.96033 0.93172 0.92281 0.91859 0.92463 0.91093 0.93952 0.91645 0.84217 0.96520 0.91787 0.91523 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.49 37.16 0.32 -2.61 16 2 C 0.07 1.30 4.71 -3.82 -0.02 1.28 16 3 N -0.54 -11.56 4.40 -228.64 -1.01 -12.57 16 4 C 0.19 5.04 4.19 -4.98 -0.02 5.02 16 5 C -0.50 -13.91 7.09 -34.44 -0.24 -14.15 16 6 H 0.07 2.02 5.57 -52.49 -0.29 1.73 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.67 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.09 1.56 1.67 -68.18 -0.11 1.44 16 14 H 0.07 1.29 6.21 -51.93 -0.32 0.97 16 15 C -0.11 -1.68 5.41 -25.65 -0.14 -1.81 16 16 C -0.12 -1.48 5.41 -27.40 -0.15 -1.63 16 17 C 0.07 0.80 6.22 -4.52 -0.03 0.77 16 18 N -0.70 -8.93 6.07 -118.54 -0.72 -9.64 16 19 C 0.08 1.18 5.99 -6.74 -0.04 1.14 16 20 C -0.15 -2.48 3.98 -27.11 -0.11 -2.59 16 21 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.08 1.93 5.78 -51.93 -0.30 1.63 16 23 H 0.05 1.09 7.76 -51.93 -0.40 0.69 16 24 H 0.05 0.88 5.96 -51.93 -0.31 0.57 16 25 H 0.02 0.45 6.88 -51.93 -0.36 0.09 16 26 H -0.01 -0.15 6.63 -51.92 -0.34 -0.49 16 27 H 0.02 0.61 7.72 -51.93 -0.40 0.21 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.99 5.99 -51.93 -0.31 0.68 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.96 7.26 -51.92 -0.38 0.58 16 33 H 0.04 0.58 6.67 -51.93 -0.35 0.23 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.34 3.55 8.85 -39.29 -0.35 3.21 16 36 H 0.02 0.27 7.55 -51.93 -0.39 -0.12 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 1.10 7.11 -51.93 -0.37 0.73 16 39 H 0.07 1.44 5.62 -51.93 -0.29 1.15 16 LS Contribution 283.81 15.07 4.28 4.28 Total: -1.00 -29.11 283.81 -8.79 -37.90 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.41 Total: 1.23 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -0.64 Total: -11.79 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.99 Total: -48.29 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.11 -8.79 -37.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160716896.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.144 kcal (2) G-P(sol) polarization free energy of solvation -29.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds