Wall clock time and date at job start Mon Mar 30 2020 03:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47199 * 2 1 4 4 C 1.46899 * 111.00228 * 73.14216 * 3 2 1 5 5 C 1.50696 * 109.47019 * 285.62807 * 4 3 2 6 6 H 1.07996 * 120.00414 * 358.16608 * 5 4 3 7 7 C 1.37879 * 119.99950 * 178.17172 * 5 4 3 8 8 N 1.31514 * 119.99970 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99973 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47279 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47101 * 120.00223 * 9 7 5 12 12 H 1.48508 * 109.47225 * 240.00143 * 9 7 5 13 13 C 1.46901 * 110.99737 * 197.09923 * 3 2 1 14 14 H 1.09005 * 108.73625 * 187.59182 * 13 3 2 15 15 C 1.54259 * 108.99551 * 69.15815 * 13 3 2 16 16 C 1.53814 * 112.03090 * 197.73910 * 15 13 3 17 17 C 1.50815 * 111.61680 * 319.00157 * 16 15 13 18 18 N 1.47622 * 108.03920 * 95.06782 * 17 16 15 19 19 C 1.39784 * 114.76841 * 277.17225 * 18 17 16 20 20 C 1.50754 * 108.85387 * 306.04001 * 13 3 2 21 21 H 1.09000 * 109.47170 * 168.45613 * 1 2 3 22 22 H 1.09004 * 109.47192 * 288.45260 * 1 2 3 23 23 H 1.08997 * 109.47177 * 48.45525 * 1 2 3 24 24 H 1.09005 * 109.47019 * 239.99697 * 2 1 3 25 25 H 1.09007 * 109.47218 * 120.00217 * 2 1 3 26 26 H 1.09010 * 109.46693 * 45.62099 * 4 3 2 27 27 H 1.08995 * 109.47519 * 165.62015 * 4 3 2 28 28 H 0.97000 * 120.00155 * 179.97438 * 8 7 5 29 29 H 1.09002 * 108.99076 * 77.05821 * 15 13 3 30 30 H 1.08998 * 108.91248 * 318.38097 * 15 13 3 31 31 H 1.08998 * 109.05271 * 198.44550 * 16 15 13 32 32 H 1.09009 * 108.98897 * 79.51190 * 16 15 13 33 33 H 1.08993 * 109.74988 * 335.42629 * 17 16 15 34 34 H 1.09007 * 109.74585 * 214.69889 * 17 16 15 35 35 H 1.00898 * 111.00641 * 150.30378 * 18 17 16 36 36 H 1.09004 * 109.01639 * 301.68233 * 19 18 17 37 37 H 1.09002 * 108.96093 * 182.82193 * 19 18 17 38 38 H 1.09006 * 109.53804 * 93.95008 * 20 13 3 39 39 H 1.08998 * 109.54282 * 333.78126 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8202 2.0139 1.3125 5 6 0.3608 2.3419 1.4957 6 1 -0.3430 2.1337 0.7036 7 6 -0.0758 2.9077 2.6748 8 7 0.7813 3.1608 3.6397 9 14 -1.8847 3.3149 2.9017 10 1 -2.6348 2.9361 1.6773 11 1 -2.4197 2.5610 4.0637 12 1 -2.0375 4.7721 3.1441 13 6 3.4310 1.4443 -0.4032 14 1 3.7933 2.4625 -0.2612 15 6 3.5416 1.0821 -1.8986 16 6 4.9769 0.6955 -2.2941 17 6 5.9950 1.5956 -1.6399 18 7 6.4616 0.9358 -0.4045 19 6 5.6323 1.1181 0.7059 20 6 4.2287 0.5162 0.4772 21 1 -0.3633 -1.0069 -0.2057 22 1 -0.3634 0.3253 0.9749 23 1 -0.3633 0.6815 -0.7691 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.1396 1.3273 2.0966 27 1 2.4085 2.9297 1.3697 28 1 0.4742 3.5593 4.4690 29 1 3.2281 1.9389 -2.4952 30 1 2.8777 0.2437 -2.1091 31 1 5.0799 0.7696 -3.3766 32 1 5.1638 -0.3341 -1.9887 33 1 5.5364 2.5536 -1.3952 34 1 6.8367 1.7512 -2.3148 35 1 7.4128 1.1969 -0.1922 36 1 5.5333 2.1855 0.9039 37 1 6.0884 0.6373 1.5713 38 1 4.3231 -0.4552 -0.0082 39 1 3.7223 0.3975 1.4351 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160716896.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:41 Heat of formation + Delta-G solvation = -15.374340 kcal Electronic energy + Delta-G solvation = -16884.562712 eV Core-core repulsion = 14440.045486 eV Total energy + Delta-G solvation = -2444.517226 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.69186 -37.91234 -34.85147 -33.75340 -32.66299 -30.69161 -28.67207 -26.66538 -25.19500 -24.22882 -22.57603 -21.46569 -19.70264 -18.57302 -17.77778 -16.94970 -16.32406 -15.93879 -15.67719 -15.55570 -15.15441 -14.69186 -14.22213 -14.07581 -13.31525 -13.22889 -13.13829 -13.03307 -12.73095 -12.62882 -12.56386 -12.18744 -11.99395 -11.89331 -11.64007 -11.45228 -11.35255 -11.08706 -10.86611 -10.53366 -9.31330 -8.92028 -8.15884 -6.22305 1.39923 1.40773 1.54094 2.41454 3.15559 3.27252 3.33469 3.84803 3.99216 4.08171 4.21649 4.25041 4.37003 4.52791 4.54665 4.61795 4.69764 4.75471 4.86668 4.94801 4.98367 5.00345 5.11741 5.12298 5.19770 5.25547 5.30638 5.39888 5.42650 5.59870 5.69227 5.75298 6.14404 6.32221 6.45863 6.62275 6.73489 6.92815 7.44523 8.94964 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.038335 B = 0.007326 C = 0.006662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.235388 B = 3820.960896 C = 4202.202592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.067 3.933 3 N -0.542 5.542 4 C 0.215 3.785 5 C -0.511 4.511 6 H 0.078 0.922 7 C -0.004 4.004 8 N -0.939 5.939 9 Si 0.963 3.037 10 H -0.260 1.260 11 H -0.280 1.280 12 H -0.282 1.282 13 C 0.086 3.914 14 H 0.042 0.958 15 C -0.102 4.102 16 C -0.109 4.109 17 C 0.063 3.937 18 N -0.699 5.699 19 C 0.089 3.911 20 C -0.137 4.137 21 H 0.063 0.937 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.081 0.919 25 H 0.010 0.990 26 H -0.035 1.035 27 H -0.013 1.013 28 H 0.261 0.739 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.024 0.976 34 H 0.097 0.903 35 H 0.355 0.645 36 H -0.004 1.004 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.688 -5.751 -10.489 14.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.061 4.061 3 N -0.266 5.266 4 C 0.089 3.911 5 C -0.549 4.549 6 H 0.096 0.904 7 C -0.201 4.201 8 N -0.581 5.581 9 Si 0.788 3.212 10 H -0.184 1.184 11 H -0.206 1.206 12 H -0.208 1.208 13 C -0.023 4.023 14 H 0.060 0.940 15 C -0.140 4.140 16 C -0.147 4.147 17 C -0.065 4.065 18 N -0.332 5.332 19 C -0.043 4.043 20 C -0.176 4.176 21 H 0.082 0.918 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.099 0.901 25 H 0.028 0.972 26 H -0.018 1.018 27 H 0.005 0.995 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.115 0.885 35 H 0.176 0.824 36 H 0.014 0.986 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.087 -5.957 -10.825 14.767 hybrid contribution -0.202 1.049 1.745 2.046 sum 7.884 -4.907 -9.080 12.988 Atomic orbital electron populations 1.21946 0.95257 1.00317 1.02379 1.21911 0.96378 0.88771 0.99035 1.62306 1.16997 1.17316 1.29976 1.19319 0.96055 0.91456 0.84276 1.21795 0.94208 1.38565 1.00340 0.90414 1.25913 1.02342 0.96017 0.95838 1.70113 1.36190 1.45331 1.06421 0.85423 0.79771 0.77674 0.78342 1.18420 1.20617 1.20790 1.21646 0.87424 0.97500 0.95732 0.93982 1.21927 0.97742 1.01395 0.92894 1.21386 0.92369 1.00407 1.00546 1.21757 0.98852 0.94798 0.91112 1.57302 1.06242 1.64987 1.04662 1.20565 0.93551 0.96626 0.93526 1.22069 0.95735 1.00561 0.99251 0.91832 0.92933 0.93188 0.90103 0.97202 1.01764 0.99453 0.93045 0.92444 0.91639 0.89759 0.91228 0.95724 0.88482 0.82380 0.98571 0.90897 0.90385 0.94208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.50 8.49 71.98 0.61 -4.88 16 2 C 0.07 2.61 4.71 86.30 0.41 3.02 16 3 N -0.54 -23.93 4.40 -877.28 -3.86 -27.79 16 4 C 0.22 11.74 4.19 85.56 0.36 12.10 16 5 C -0.51 -29.08 7.09 25.60 0.18 -28.90 16 6 H 0.08 4.29 5.57 -2.91 -0.02 4.27 16 7 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 8 N -0.94 -57.69 13.29 21.45 0.28 -57.41 16 9 Si 0.96 45.01 29.54 68.60 2.03 47.03 16 10 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 13 C 0.09 3.16 1.67 44.61 0.07 3.24 16 14 H 0.04 1.73 6.21 -2.38 -0.01 1.72 16 15 C -0.10 -2.95 5.41 31.30 0.17 -2.78 16 16 C -0.11 -2.44 5.41 30.16 0.16 -2.28 16 17 C 0.06 1.38 6.22 85.45 0.53 1.91 16 18 N -0.70 -16.39 6.07 -528.96 -3.21 -19.60 16 19 C 0.09 2.65 5.99 88.07 0.53 3.18 16 20 C -0.14 -4.73 3.98 30.35 0.12 -4.61 16 21 H 0.06 2.00 8.14 -2.39 -0.02 1.99 16 22 H 0.05 2.38 5.78 -2.39 -0.01 2.37 16 23 H 0.05 1.96 7.76 -2.39 -0.02 1.94 16 24 H 0.08 2.67 5.96 -2.38 -0.01 2.66 16 25 H 0.01 0.41 6.88 -2.38 -0.02 0.39 16 26 H -0.04 -2.10 6.63 -2.38 -0.02 -2.11 16 27 H -0.01 -0.76 7.72 -2.39 -0.02 -0.78 16 28 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 1.87 5.99 -2.39 -0.01 1.86 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.63 7.26 -2.38 -0.02 1.61 16 33 H 0.02 0.64 6.67 -2.39 -0.02 0.63 16 34 H 0.10 1.57 8.14 -2.38 -0.02 1.56 16 35 H 0.36 6.60 8.85 -89.70 -0.79 5.80 16 36 H 0.00 -0.12 7.55 -2.38 -0.02 -0.14 16 37 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.08 2.50 7.11 -2.38 -0.02 2.48 16 39 H 0.04 1.64 5.62 -2.39 -0.01 1.63 16 Total: -1.00 -64.52 283.81 -0.91 -65.44 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.24 Total: 12.12 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 3.61 Total: -19.79 kcal Atomic # 7 Polarization: -98.02 SS G_CDS: -6.78 Total: -104.80 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -64.52 -0.91 -65.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160716896.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.063 kcal (2) G-P(sol) polarization free energy of solvation -64.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds