Wall clock time and date at job start Mon Mar 30 2020 03:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99875 * 2 1 4 4 H 1.48494 * 109.47165 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47357 * 300.00478 * 3 2 1 6 6 H 1.48503 * 109.46818 * 60.00369 * 3 2 1 7 7 C 1.37872 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00511 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99874 * 359.97438 * 7 2 1 10 10 O 1.42102 * 104.27739 * 63.93495 * 9 7 2 11 11 O 1.42100 * 104.27971 * 296.07712 * 9 7 2 12 12 C 1.81402 * 104.44989 * 180.02562 * 9 7 2 13 13 C 1.50706 * 109.47391 * 180.02562 * 12 9 7 14 14 C 1.38227 * 119.61686 * 270.02592 * 13 12 9 15 15 C 1.38627 * 119.15663 * 179.70253 * 14 13 12 16 16 C 1.38669 * 118.42388 * 0.51169 * 15 14 13 17 17 C 1.38186 * 119.16143 * 359.50231 * 16 15 14 18 18 N 1.31856 * 119.61480 * 89.99509 * 13 12 9 19 19 H 0.96996 * 119.99944 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.47542 * 60.00049 * 12 9 7 21 21 H 1.08999 * 109.46935 * 299.99918 * 12 9 7 22 22 H 1.07998 * 120.41947 * 359.94797 * 14 13 12 23 23 H 1.08008 * 120.78691 * 180.26734 * 15 14 13 24 24 H 1.08002 * 120.42244 * 179.78749 * 16 15 14 25 25 H 1.07996 * 119.61757 * 180.25243 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 16 1.1236 -2.7199 -0.0005 10 8 0.4239 -2.7206 -1.2373 11 8 0.4246 -2.7211 1.2366 12 6 2.4186 -3.9902 -0.0005 13 6 1.7823 -5.3564 -0.0012 14 6 1.4930 -5.9758 1.2002 15 6 0.9020 -7.2297 1.1885 16 6 0.6327 -7.8210 -0.0365 17 6 0.9506 -7.1411 -1.1968 18 7 1.5075 -5.9466 -1.1478 19 1 -0.4850 0.8400 0.0004 20 1 3.0378 -3.8779 0.8894 21 1 3.0378 -3.8778 -0.8905 22 1 1.7208 -5.4873 2.1361 23 1 0.6607 -7.7358 2.1117 24 1 0.1761 -8.7987 -0.0833 25 1 0.7403 -7.5930 -2.1549 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169415752.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:17 Heat of formation + Delta-G solvation = -81.589449 kcal Electronic energy + Delta-G solvation = -13398.984880 eV Core-core repulsion = 10889.131277 eV Total energy + Delta-G solvation = -2509.853603 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.040 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.15212 -37.20302 -36.17716 -35.11532 -34.11363 -33.33147 -29.11039 -28.13552 -24.50648 -23.37000 -20.66239 -18.91993 -17.92745 -17.61126 -17.38380 -16.60111 -16.29629 -16.05054 -15.72432 -14.84130 -14.35409 -14.11532 -13.92306 -13.49877 -13.27392 -13.00219 -12.70786 -12.40890 -12.33484 -12.23607 -11.73892 -11.22326 -10.90273 -10.77952 -10.47508 -9.88590 -8.70543 -7.45057 -0.34498 0.23899 0.38346 1.34608 1.35983 1.53864 2.20113 2.62054 2.77376 2.94173 3.42465 3.60202 3.75309 3.91790 4.04133 4.15800 4.22818 4.41938 4.68379 4.74137 4.81677 5.13678 5.19617 5.28476 5.72991 5.89228 6.81288 6.95480 8.26607 Molecular weight = 227.04amu Principal moments of inertia in cm(-1) A = 0.065421 B = 0.007706 C = 0.007648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.894483 B = 3632.611823 C = 3660.334856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.992 3.008 4 H -0.242 1.242 5 H -0.262 1.262 6 H -0.258 1.258 7 C -1.032 5.032 8 H 0.126 0.874 9 S 2.516 3.484 10 O -1.019 7.019 11 O -1.014 7.014 12 C -0.556 4.556 13 C 0.096 3.904 14 C -0.177 4.177 15 C -0.073 4.073 16 C -0.161 4.161 17 C 0.082 3.918 18 N -0.514 5.514 19 H 0.295 0.705 20 H 0.169 0.831 21 H 0.151 0.849 22 H 0.153 0.847 23 H 0.179 0.821 24 H 0.183 0.817 25 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.204 -12.221 2.460 13.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.147 4.147 3 Si 0.810 3.190 4 H -0.164 1.164 5 H -0.186 1.186 6 H -0.183 1.183 7 C -1.165 5.165 8 H 0.144 0.856 9 S 2.706 3.294 10 O -1.016 7.016 11 O -1.011 7.011 12 C -0.684 4.684 13 C -0.040 4.040 14 C -0.198 4.198 15 C -0.099 4.099 16 C -0.181 4.181 17 C -0.076 4.076 18 N -0.225 5.225 19 H 0.105 0.895 20 H 0.187 0.813 21 H 0.169 0.831 22 H 0.171 0.829 23 H 0.197 0.803 24 H 0.201 0.799 25 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 4.308 -11.858 1.684 12.728 hybrid contribution 0.697 0.646 0.566 1.106 sum 5.005 -11.211 2.250 12.482 Atomic orbital electron populations 1.70078 1.08963 1.31856 1.40916 1.26097 0.95401 1.05475 0.87682 0.85082 0.79729 0.74897 0.79287 1.16435 1.18638 1.18260 1.30687 1.07081 1.11741 1.66982 0.85624 1.03600 0.76236 0.76664 0.72901 1.93296 1.73101 1.87845 1.47387 1.93288 1.72919 1.87957 1.46956 1.29294 1.18228 1.07172 1.13723 1.20394 0.98343 0.94885 0.90427 1.22404 1.00812 0.97650 0.98934 1.22138 0.93659 0.93303 1.00759 1.22689 1.00078 1.02965 0.92328 1.23466 0.93584 0.89303 1.01231 1.67404 1.13167 1.12198 1.29725 0.89476 0.81294 0.83094 0.82921 0.80346 0.79930 0.79616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.84 13.03 21.45 0.28 -54.56 15 2 C 0.07 3.76 5.46 84.65 0.46 4.23 15 3 Si 0.99 41.83 29.54 68.60 2.03 43.86 15 4 H -0.24 -9.29 7.11 99.48 0.71 -8.58 15 5 H -0.26 -10.55 7.11 99.48 0.71 -9.84 15 6 H -0.26 -10.25 7.11 99.48 0.71 -9.54 15 7 C -1.03 -57.54 9.32 67.73 0.63 -56.91 15 8 H 0.13 6.08 7.81 -2.91 -0.02 6.06 15 9 S 2.52 138.00 4.46 -56.49 -0.25 137.75 15 10 O -1.02 -64.42 17.85 -127.65 -2.28 -66.70 15 11 O -1.01 -60.93 17.85 -127.65 -2.28 -63.21 15 12 C -0.56 -22.07 6.26 71.24 0.45 -21.63 15 13 C 0.10 3.69 6.04 42.55 0.26 3.94 15 14 C -0.18 -5.54 9.75 22.36 0.22 -5.32 15 15 C -0.07 -1.68 10.18 22.47 0.23 -1.45 15 16 C -0.16 -3.39 10.11 22.36 0.23 -3.16 15 17 C 0.08 2.26 11.18 84.67 0.95 3.21 15 18 N -0.51 -19.56 10.27 -183.88 -1.89 -21.45 15 19 H 0.30 16.35 8.31 -92.71 -0.77 15.58 15 20 H 0.17 5.37 8.08 -2.39 -0.02 5.35 15 21 H 0.15 5.56 8.14 -2.39 -0.02 5.54 15 22 H 0.15 4.25 8.06 -2.91 -0.02 4.23 15 23 H 0.18 2.53 8.06 -2.91 -0.02 2.50 15 24 H 0.18 2.06 8.06 -2.91 -0.02 2.04 15 25 H 0.19 3.75 8.06 -2.91 -0.02 3.73 15 Total: -1.00 -84.58 247.20 0.22 -84.36 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 1.19 Total: 17.06 kcal Atomic # 6 Polarization: -80.50 SS G_CDS: 3.42 Total: -77.09 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -1.61 Total: -76.02 kcal Atomic # 8 Polarization: -125.36 SS G_CDS: -4.56 Total: -129.92 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 16 Polarization: 138.00 SS G_CDS: -0.25 Total: 137.75 kcal Total: -84.58 0.22 -84.36 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169415752.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.767 kcal (2) G-P(sol) polarization free energy of solvation -84.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds