Wall clock time and date at job start Mon Mar 30 2020 03:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46907 * 109.47049 * 2 1 4 4 C 1.46896 * 110.99603 * 163.42129 * 3 2 1 5 5 C 1.53007 * 109.46984 * 189.99957 * 4 3 2 6 6 N 1.46893 * 109.47082 * 180.02562 * 5 4 3 7 7 C 1.46898 * 111.00069 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47707 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47529 * 179.97438 * 8 7 6 10 10 H 1.07997 * 120.00313 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00153 * 180.02562 * 9 8 7 12 12 N 1.31523 * 119.99690 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00141 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46931 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47408 * 119.99889 * 13 11 9 16 16 H 1.48508 * 109.46812 * 239.99447 * 13 11 9 17 17 C 1.46902 * 110.99923 * 287.37920 * 3 2 1 18 18 C 1.53003 * 117.49700 * 138.29678 * 17 3 2 19 19 C 1.52999 * 117.49992 * 69.67181 * 17 3 2 20 20 H 1.09006 * 109.47098 * 313.64522 * 1 2 3 21 21 H 1.09004 * 109.47313 * 73.64062 * 1 2 3 22 22 H 1.08993 * 109.47581 * 193.64503 * 1 2 3 23 23 H 1.08998 * 109.47108 * 240.00423 * 2 1 3 24 24 H 1.08993 * 109.46924 * 119.99769 * 2 1 3 25 25 H 1.09005 * 109.46819 * 70.00567 * 4 3 2 26 26 H 1.08995 * 109.47884 * 309.99781 * 4 3 2 27 27 H 1.08997 * 109.47136 * 300.00331 * 5 4 3 28 28 H 1.08997 * 109.47071 * 60.00049 * 5 4 3 29 29 H 1.00900 * 111.00451 * 56.04495 * 6 5 4 30 30 H 1.09003 * 109.46852 * 299.99430 * 7 6 5 31 31 H 1.08993 * 109.47610 * 59.99071 * 7 6 5 32 32 H 1.08998 * 109.46866 * 300.00145 * 8 7 6 33 33 H 1.09001 * 109.46860 * 59.99474 * 8 7 6 34 34 H 0.97003 * 119.99781 * 180.02562 * 12 11 9 35 35 H 1.09003 * 115.54892 * 283.99977 * 17 3 2 36 36 H 1.08996 * 117.49994 * 359.97438 * 18 17 3 37 37 H 1.09002 * 117.49580 * 145.01987 * 18 17 3 38 38 H 1.08994 * 117.49979 * 214.97569 * 19 17 3 39 39 H 1.08992 * 117.49794 * 359.97438 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 3.4344 1.4432 0.3913 5 6 3.8403 2.9003 0.6220 6 7 5.2551 2.9585 1.0127 7 6 5.6809 4.3453 1.2437 8 6 7.1562 4.3653 1.6484 9 6 7.5931 5.7880 1.8847 10 1 6.8891 6.5972 1.7585 11 6 8.8920 6.0569 2.2611 12 7 9.7495 5.0715 2.4144 13 14 9.4334 7.8204 2.5548 14 1 8.2883 8.7357 2.3177 15 1 9.9032 7.9673 3.9558 16 1 10.5393 8.1602 1.6236 17 6 1.8089 2.0179 -1.3088 18 6 1.3128 3.4652 -1.3220 19 6 0.3683 2.3289 -1.7194 20 1 -0.3633 0.7093 0.7437 21 1 -0.3634 0.2895 -0.9861 22 1 -0.3634 -0.9986 0.2424 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 4.0485 1.0161 -0.4016 26 1 3.5809 0.8754 1.3101 27 1 3.6938 3.4681 -0.2968 28 1 3.2262 3.3273 1.4148 29 1 5.8395 2.5106 0.3228 30 1 5.5467 4.9235 0.3295 31 1 5.0798 4.7819 2.0411 32 1 7.2900 3.7871 2.5627 33 1 7.7576 3.9285 0.8511 34 1 10.6632 5.2606 2.6796 35 1 2.5020 1.7160 -2.0941 36 1 1.1423 3.9476 -0.3596 37 1 1.6795 4.1157 -2.1160 38 1 0.1136 2.2321 -2.7747 39 1 -0.4232 2.0636 -1.0186 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218431506.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:58 Heat of formation + Delta-G solvation = -0.426001 kcal Electronic energy + Delta-G solvation = -15477.804922 eV Core-core repulsion = 13033.935904 eV Total energy + Delta-G solvation = -2443.869017 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.88349 -37.53740 -35.51516 -34.89916 -32.72967 -30.88622 -27.95483 -25.60640 -23.80703 -23.32583 -22.57468 -22.44147 -21.14743 -18.51636 -17.22001 -16.87246 -16.58210 -16.30389 -16.19108 -15.04029 -14.99161 -14.73925 -14.24711 -14.18397 -13.97598 -13.29286 -13.12234 -12.92007 -12.76690 -12.47371 -12.45703 -12.18383 -12.15335 -12.01114 -11.73306 -11.40658 -11.25511 -11.04091 -10.94278 -10.57332 -9.40561 -9.26014 -8.20923 -6.32514 1.40465 1.41176 1.54673 2.40147 2.67499 2.88874 3.12481 3.49196 4.00380 4.03350 4.09125 4.11470 4.21546 4.32464 4.50264 4.54158 4.59183 4.60056 4.66801 4.74111 4.79854 4.94902 5.00231 5.02844 5.07042 5.10943 5.17692 5.31081 5.41104 5.43729 5.65931 5.77157 6.06092 6.10994 6.19535 6.27232 6.52630 6.84644 7.36807 8.91563 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.054207 B = 0.004015 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.413091 B = 6972.327367 C = 7326.277175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 N -0.519 5.519 4 C 0.071 3.929 5 C 0.073 3.927 6 N -0.698 5.698 7 C 0.087 3.913 8 C 0.031 3.969 9 C -0.545 4.545 10 H 0.060 0.940 11 C 0.000 4.000 12 N -0.932 5.932 13 Si 0.969 3.031 14 H -0.262 1.262 15 H -0.277 1.277 16 H -0.277 1.277 17 C -0.009 4.009 18 C -0.172 4.172 19 C -0.156 4.156 20 H 0.055 0.945 21 H 0.066 0.934 22 H 0.069 0.931 23 H 0.036 0.964 24 H 0.073 0.927 25 H 0.033 0.967 26 H 0.079 0.921 27 H 0.029 0.971 28 H 0.064 0.936 29 H 0.338 0.662 30 H 0.018 0.982 31 H 0.056 0.944 32 H -0.005 1.005 33 H -0.008 1.008 34 H 0.264 0.736 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.959 -8.223 -8.352 22.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.075 4.075 3 N -0.244 5.244 4 C -0.057 4.057 5 C -0.056 4.056 6 N -0.329 5.329 7 C -0.042 4.042 8 C -0.007 4.007 9 C -0.583 4.583 10 H 0.078 0.922 11 C -0.198 4.198 12 N -0.572 5.572 13 Si 0.793 3.207 14 H -0.186 1.186 15 H -0.203 1.203 16 H -0.202 1.202 17 C -0.118 4.118 18 C -0.210 4.210 19 C -0.193 4.193 20 H 0.074 0.926 21 H 0.085 0.915 22 H 0.087 0.913 23 H 0.054 0.946 24 H 0.092 0.908 25 H 0.051 0.949 26 H 0.097 0.903 27 H 0.048 0.952 28 H 0.083 0.917 29 H 0.155 0.845 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.013 0.987 33 H 0.011 0.989 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.127 0.873 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -19.206 -8.135 -7.289 22.095 hybrid contribution 1.356 0.613 -1.164 1.889 sum -17.850 -7.522 -8.453 21.134 Atomic orbital electron populations 1.21955 0.93773 1.02175 1.02519 1.22103 0.97153 0.87413 1.00841 1.61773 1.17661 1.18365 1.26630 1.21901 0.87462 0.96128 1.00209 1.21798 0.88415 0.96564 0.98829 1.60410 1.03782 1.17685 1.51061 1.21743 0.96760 0.87515 0.98169 1.18935 0.91127 0.95585 0.95013 1.21639 0.96408 0.93756 1.46530 0.92171 1.25999 0.96796 1.02071 0.94950 1.70121 1.05071 1.33586 1.48408 0.85345 0.78381 0.79074 0.77901 1.18569 1.20277 1.20234 1.22420 0.98943 0.99164 0.91263 1.23046 1.04053 0.90962 1.02908 1.23283 0.92122 1.01302 1.02575 0.92571 0.91541 0.91252 0.94557 0.90833 0.94909 0.90253 0.95249 0.91729 0.84500 0.96402 0.92543 0.98658 0.98944 0.92702 0.90181 0.89320 0.88481 0.87316 0.87282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.63 71.98 0.62 -1.53 16 2 C 0.05 0.95 5.70 86.30 0.49 1.44 16 3 N -0.52 -11.54 4.60 -870.96 -4.01 -15.55 16 4 C 0.07 1.82 5.21 86.31 0.45 2.27 16 5 C 0.07 2.23 5.50 86.31 0.47 2.70 16 6 N -0.70 -25.93 6.50 -513.91 -3.34 -29.27 16 7 C 0.09 3.83 5.62 86.30 0.49 4.32 16 8 C 0.03 1.70 5.23 29.85 0.16 1.85 16 9 C -0.54 -31.81 9.11 25.60 0.23 -31.57 16 10 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 11 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 12 N -0.93 -57.64 13.29 21.45 0.28 -57.35 16 13 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 14 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 16 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 17 C -0.01 -0.19 4.22 44.92 0.19 0.00 16 18 C -0.17 -3.41 9.27 30.60 0.28 -3.12 16 19 C -0.16 -2.49 8.66 30.60 0.26 -2.23 16 20 H 0.06 0.92 8.05 -2.38 -0.02 0.90 16 21 H 0.07 0.89 5.72 -2.38 -0.01 0.87 16 22 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.04 0.64 8.04 -2.39 -0.02 0.62 16 24 H 0.07 1.32 7.80 -2.39 -0.02 1.31 16 25 H 0.03 0.82 8.12 -2.38 -0.02 0.80 16 26 H 0.08 2.08 7.86 -2.39 -0.02 2.07 16 27 H 0.03 0.88 6.59 -2.39 -0.02 0.87 16 28 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.34 12.07 8.73 -89.69 -0.78 11.29 16 30 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 32 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 33 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 34 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.11 1.68 5.93 -2.39 -0.01 1.67 16 Total: -1.00 -64.09 312.18 -0.72 -64.81 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.21 Total: 15.95 kcal Atomic # 6 Polarization: -29.54 SS G_CDS: 4.11 Total: -25.42 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -7.07 Total: -102.17 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -64.09 -0.72 -64.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218431506.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.384 kcal (2) G-P(sol) polarization free energy of solvation -64.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds