Wall clock time and date at job start Mon Mar 30 2020 03:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.47133 * 2 1 4 4 C 1.46905 * 110.99967 * 294.51290 * 3 2 1 5 5 C 1.50698 * 109.47068 * 297.02529 * 4 3 2 6 6 H 1.08004 * 120.00208 * 355.02262 * 5 4 3 7 7 C 1.37878 * 119.99997 * 175.01836 * 5 4 3 8 8 N 1.31512 * 120.00005 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00022 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47415 * 90.00259 * 9 7 5 11 11 H 1.48509 * 109.47286 * 210.00069 * 9 7 5 12 12 H 1.48497 * 109.47440 * 330.00024 * 9 7 5 13 13 C 1.46891 * 111.00205 * 58.46802 * 3 2 1 14 14 H 1.09001 * 109.47292 * 292.37173 * 13 3 2 15 15 C 1.53003 * 109.47465 * 172.37081 * 13 3 2 16 16 C 1.52994 * 109.47195 * 180.02562 * 15 13 3 17 17 C 1.53004 * 109.47326 * 60.00298 * 16 15 13 18 18 C 1.53001 * 109.46885 * 299.99446 * 17 16 15 19 19 H 1.08998 * 109.47092 * 179.97438 * 18 17 16 20 20 N 1.46895 * 109.47338 * 300.00541 * 18 17 16 21 21 C 1.53003 * 109.46875 * 60.00141 * 18 17 16 22 22 H 1.09000 * 109.46997 * 184.43261 * 1 2 3 23 23 H 1.08999 * 109.46932 * 304.43621 * 1 2 3 24 24 H 1.09002 * 109.46913 * 64.43647 * 1 2 3 25 25 H 1.08999 * 109.47011 * 240.00057 * 2 1 3 26 26 H 1.08996 * 109.47096 * 119.99757 * 2 1 3 27 27 H 1.09001 * 109.47083 * 57.02771 * 4 3 2 28 28 H 1.09000 * 109.47043 * 177.02351 * 4 3 2 29 29 H 0.97001 * 120.00350 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.46941 * 300.00307 * 15 13 3 31 31 H 1.09001 * 109.46786 * 59.99826 * 15 13 3 32 32 H 1.09001 * 109.47422 * 300.00006 * 16 15 13 33 33 H 1.09001 * 109.47004 * 180.02562 * 16 15 13 34 34 H 1.08999 * 109.46868 * 180.02562 * 17 16 15 35 35 H 1.09001 * 109.47108 * 59.99516 * 17 16 15 36 36 H 1.00900 * 110.99865 * 299.99109 * 20 18 17 37 37 H 1.00900 * 111.00593 * 63.95382 * 20 18 17 38 38 H 1.08995 * 109.47570 * 179.97438 * 21 18 17 39 39 H 1.09001 * 109.47310 * 59.99812 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6587 2.0710 -1.2479 5 6 2.3296 1.3855 -2.4102 6 1 3.0238 0.5773 -2.2330 7 6 2.0571 1.7899 -3.6998 8 7 1.2113 2.7736 -3.9156 9 14 2.8881 0.9397 -5.1406 10 1 2.0543 -0.2047 -5.5880 11 1 3.0473 1.9034 -6.2593 12 1 4.2235 0.4446 -4.7200 13 6 1.5190 2.1204 1.1689 14 1 0.4406 2.2525 1.0805 15 6 2.1966 3.4905 1.2381 16 6 1.6756 4.2561 2.4559 17 6 1.9907 3.4665 3.7280 18 6 1.3130 2.0965 3.6588 19 1 1.5378 1.5337 4.5648 20 7 -0.1403 2.2745 3.5402 21 6 1.8340 1.3307 2.4410 22 1 -0.3633 -1.0246 0.0794 23 1 -0.3633 0.5811 0.8476 24 1 -0.3633 0.4435 -0.9271 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.5774 2.0376 -1.3811 28 1 1.9869 3.1093 -1.1997 29 1 1.0199 3.0585 -4.8229 30 1 3.2750 3.3584 1.3265 31 1 1.9725 4.0528 0.3317 32 1 0.5972 4.3882 2.3680 33 1 2.1580 5.2323 2.5050 34 1 1.6190 4.0118 4.5955 35 1 3.0691 3.3344 3.8159 36 1 -0.5089 2.7779 4.3332 37 1 -0.3787 2.7369 2.6757 38 1 1.3516 0.3546 2.3918 39 1 2.9124 1.1987 2.5289 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223151718.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:26 Heat of formation + Delta-G solvation = -11.619874 kcal Electronic energy + Delta-G solvation = -16928.275051 eV Core-core repulsion = 14483.920630 eV Total energy + Delta-G solvation = -2444.354420 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.41688 -36.29076 -32.60670 -32.35600 -29.86568 -29.25370 -27.87130 -25.86929 -23.33186 -22.15031 -21.66384 -19.51305 -18.37254 -16.45935 -16.00768 -15.00035 -14.73519 -14.70858 -14.40393 -13.91649 -13.70402 -13.09603 -12.70629 -12.11935 -11.97744 -11.76599 -11.65284 -11.56396 -11.22390 -11.16449 -10.89220 -10.67849 -10.59172 -10.37511 -10.01974 -9.96735 -9.78073 -9.33950 -9.06684 -8.56728 -8.37766 -7.05993 -5.98926 -3.99110 3.33484 3.39745 3.44145 4.45173 4.68918 4.80197 4.96410 5.04159 5.28154 5.36675 5.48675 5.60221 5.70121 5.72013 5.82759 5.93117 5.98491 6.07748 6.13178 6.18990 6.20191 6.31885 6.44242 6.56118 6.60102 6.71396 6.81511 6.87557 7.04973 7.27136 7.42965 7.51727 7.54851 7.86870 8.18718 8.30860 8.65758 9.09421 9.64656 11.11840 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.040483 B = 0.007217 C = 0.006717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.489822 B = 3878.606653 C = 4167.755485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.060 3.940 3 N -0.532 5.532 4 C 0.188 3.812 5 C -0.504 4.504 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.273 1.273 13 C 0.086 3.914 14 H 0.035 0.965 15 C -0.114 4.114 16 C -0.119 4.119 17 C -0.153 4.153 18 C 0.093 3.907 19 H 0.074 0.926 20 N -0.845 5.845 21 C -0.108 4.108 22 H 0.043 0.957 23 H 0.051 0.949 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.053 0.947 27 H -0.002 1.002 28 H 0.029 0.971 29 H 0.260 0.740 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.333 0.667 37 H 0.343 0.657 38 H 0.070 0.930 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.609 0.281 13.521 13.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.069 4.069 3 N -0.256 5.256 4 C 0.063 3.937 5 C -0.543 4.543 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.023 4.023 14 H 0.053 0.947 15 C -0.152 4.152 16 C -0.157 4.157 17 C -0.192 4.192 18 C -0.019 4.019 19 H 0.092 0.908 20 N -0.376 5.376 21 C -0.146 4.146 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.098 0.902 26 H 0.071 0.929 27 H 0.016 0.984 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.145 0.855 37 H 0.158 0.842 38 H 0.088 0.912 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.200 -0.431 13.395 13.404 hybrid contribution -0.316 0.752 -0.985 1.279 sum -0.516 0.321 12.410 12.425 Atomic orbital electron populations 1.22387 0.99423 1.00669 1.02161 1.21992 0.92107 0.91565 1.01205 1.62357 1.58609 1.01642 1.02986 1.19776 0.94750 0.94344 0.84822 1.21187 1.25040 1.17877 0.90181 0.91995 1.24972 0.95420 0.95309 0.98921 1.69957 1.35086 1.27986 1.20901 0.86550 0.79934 0.79185 0.82063 1.20809 1.21344 1.19829 1.21473 0.96390 0.93306 0.91160 0.94708 1.21633 1.00805 0.95562 0.97225 1.21534 1.00525 0.98601 0.95031 1.22346 1.01771 0.97586 0.97495 1.21430 0.87181 0.94550 0.98782 0.90753 1.59014 1.11985 1.58981 1.07593 1.21702 1.00938 0.98972 0.92959 0.93776 0.92984 0.91920 0.90235 0.92867 0.98446 0.95356 0.93057 0.91488 0.91170 0.92774 0.92162 0.92783 0.91496 0.85539 0.84166 0.91166 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.52 9.05 37.16 0.34 -3.19 16 2 C 0.06 1.18 5.33 -3.82 -0.02 1.16 16 3 N -0.53 -11.36 4.59 -228.08 -1.05 -12.41 16 4 C 0.19 4.84 4.34 -4.97 -0.02 4.82 16 5 C -0.50 -14.14 8.30 -34.44 -0.29 -14.43 16 6 H 0.06 1.73 7.12 -52.48 -0.37 1.36 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 9 Si 0.89 21.79 29.54 -169.99 -5.02 16.76 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 13 C 0.09 1.51 1.05 -67.71 -0.07 1.44 16 14 H 0.04 0.65 5.05 -51.93 -0.26 0.39 16 15 C -0.11 -1.92 5.09 -26.73 -0.14 -2.05 16 16 C -0.12 -1.56 5.66 -26.73 -0.15 -1.71 16 17 C -0.15 -1.76 5.61 -26.73 -0.15 -1.91 16 18 C 0.09 1.15 3.69 -67.71 -0.25 0.90 16 19 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 20 N -0.84 -10.31 9.12 -4.67 -0.04 -10.35 16 21 C -0.11 -1.61 4.33 -26.73 -0.12 -1.73 16 22 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.93 6.03 -51.93 -0.31 0.62 16 24 H 0.06 1.35 6.69 -51.93 -0.35 1.00 16 25 H 0.08 1.73 6.61 -51.93 -0.34 1.39 16 26 H 0.05 0.94 6.30 -51.93 -0.33 0.61 16 27 H 0.00 -0.06 6.41 -51.93 -0.33 -0.39 16 28 H 0.03 0.78 6.09 -51.93 -0.32 0.46 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.34 6.35 -51.93 -0.33 1.01 16 32 H 0.05 0.69 6.76 -51.93 -0.35 0.34 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.33 3.34 9.04 -39.29 -0.36 2.99 16 37 H 0.34 4.52 5.45 -39.29 -0.21 4.30 16 38 H 0.07 1.10 6.00 -51.93 -0.31 0.79 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 284.94 15.07 4.29 4.29 Total: -1.00 -28.97 284.94 -8.31 -37.29 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.27 Total: 5.66 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -0.96 Total: -15.24 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.35 Total: -48.76 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.97 -8.31 -37.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223151718.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.666 kcal (2) G-P(sol) polarization free energy of solvation -28.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds