Wall clock time and date at job start Mon Mar 30 2020 03:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.47133 * 2 1 4 4 C 1.46905 * 110.99967 * 294.51290 * 3 2 1 5 5 C 1.50698 * 109.47068 * 297.02529 * 4 3 2 6 6 H 1.08004 * 120.00208 * 355.02262 * 5 4 3 7 7 C 1.37878 * 119.99997 * 175.01836 * 5 4 3 8 8 N 1.31512 * 120.00005 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00022 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47415 * 90.00259 * 9 7 5 11 11 H 1.48509 * 109.47286 * 210.00069 * 9 7 5 12 12 H 1.48497 * 109.47440 * 330.00024 * 9 7 5 13 13 C 1.46891 * 111.00205 * 58.46802 * 3 2 1 14 14 H 1.09001 * 109.47292 * 292.37173 * 13 3 2 15 15 C 1.53003 * 109.47465 * 172.37081 * 13 3 2 16 16 C 1.52994 * 109.47195 * 180.02562 * 15 13 3 17 17 C 1.53004 * 109.47326 * 60.00298 * 16 15 13 18 18 C 1.53001 * 109.46885 * 299.99446 * 17 16 15 19 19 H 1.08998 * 109.47092 * 179.97438 * 18 17 16 20 20 N 1.46895 * 109.47338 * 300.00541 * 18 17 16 21 21 C 1.53003 * 109.46875 * 60.00141 * 18 17 16 22 22 H 1.09000 * 109.46997 * 184.43261 * 1 2 3 23 23 H 1.08999 * 109.46932 * 304.43621 * 1 2 3 24 24 H 1.09002 * 109.46913 * 64.43647 * 1 2 3 25 25 H 1.08999 * 109.47011 * 240.00057 * 2 1 3 26 26 H 1.08996 * 109.47096 * 119.99757 * 2 1 3 27 27 H 1.09001 * 109.47083 * 57.02771 * 4 3 2 28 28 H 1.09000 * 109.47043 * 177.02351 * 4 3 2 29 29 H 0.97001 * 120.00350 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.46941 * 300.00307 * 15 13 3 31 31 H 1.09001 * 109.46786 * 59.99826 * 15 13 3 32 32 H 1.09001 * 109.47422 * 300.00006 * 16 15 13 33 33 H 1.09001 * 109.47004 * 180.02562 * 16 15 13 34 34 H 1.08999 * 109.46868 * 180.02562 * 17 16 15 35 35 H 1.09001 * 109.47108 * 59.99516 * 17 16 15 36 36 H 1.00900 * 110.99865 * 299.99109 * 20 18 17 37 37 H 1.00900 * 111.00593 * 63.95382 * 20 18 17 38 38 H 1.08995 * 109.47570 * 179.97438 * 21 18 17 39 39 H 1.09001 * 109.47310 * 59.99812 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6587 2.0710 -1.2479 5 6 2.3296 1.3855 -2.4102 6 1 3.0238 0.5773 -2.2330 7 6 2.0571 1.7899 -3.6998 8 7 1.2113 2.7736 -3.9156 9 14 2.8881 0.9397 -5.1406 10 1 2.0543 -0.2047 -5.5880 11 1 3.0473 1.9034 -6.2593 12 1 4.2235 0.4446 -4.7200 13 6 1.5190 2.1204 1.1689 14 1 0.4406 2.2525 1.0805 15 6 2.1966 3.4905 1.2381 16 6 1.6756 4.2561 2.4559 17 6 1.9907 3.4665 3.7280 18 6 1.3130 2.0965 3.6588 19 1 1.5378 1.5337 4.5648 20 7 -0.1403 2.2745 3.5402 21 6 1.8340 1.3307 2.4410 22 1 -0.3633 -1.0246 0.0794 23 1 -0.3633 0.5811 0.8476 24 1 -0.3633 0.4435 -0.9271 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.5774 2.0376 -1.3811 28 1 1.9869 3.1093 -1.1997 29 1 1.0199 3.0585 -4.8229 30 1 3.2750 3.3584 1.3265 31 1 1.9725 4.0528 0.3317 32 1 0.5972 4.3882 2.3680 33 1 2.1580 5.2323 2.5050 34 1 1.6190 4.0118 4.5955 35 1 3.0691 3.3344 3.8159 36 1 -0.5089 2.7779 4.3332 37 1 -0.3787 2.7369 2.6757 38 1 1.3516 0.3546 2.3918 39 1 2.9124 1.1987 2.5289 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223151718.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:26 Heat of formation + Delta-G solvation = -32.124698 kcal Electronic energy + Delta-G solvation = -16929.164206 eV Core-core repulsion = 14483.920630 eV Total energy + Delta-G solvation = -2445.243576 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.73896 -37.77516 -34.72369 -33.54459 -31.19776 -30.92740 -29.12305 -27.71723 -25.05687 -23.68186 -22.97453 -20.93919 -19.68854 -18.42425 -17.46401 -16.65491 -16.28265 -16.09765 -15.69214 -15.27811 -15.01433 -14.67920 -14.38535 -13.65456 -13.41493 -13.32330 -13.19347 -12.84799 -12.82262 -12.70605 -12.55356 -12.44655 -12.07416 -11.93070 -11.67841 -11.47044 -11.24708 -10.99869 -10.80839 -10.54846 -9.51319 -8.83518 -8.18200 -6.26939 1.39680 1.40677 1.52247 2.40660 3.14258 3.32608 3.71640 3.82333 3.95526 4.08909 4.31058 4.32714 4.37133 4.48336 4.51625 4.59392 4.67577 4.70323 4.81069 4.91531 5.00852 5.05450 5.15810 5.21368 5.23873 5.30041 5.34238 5.39963 5.43608 5.48742 5.57697 5.70925 6.12951 6.30444 6.44477 6.66538 6.78550 6.91504 7.42250 8.92488 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.040483 B = 0.007217 C = 0.006717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.489822 B = 3878.606653 C = 4167.755485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.060 3.940 3 N -0.540 5.540 4 C 0.208 3.792 5 C -0.520 4.520 6 H 0.059 0.941 7 C 0.001 3.999 8 N -0.934 5.934 9 Si 0.965 3.035 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.266 1.266 13 C 0.087 3.913 14 H 0.025 0.975 15 C -0.112 4.112 16 C -0.112 4.112 17 C -0.145 4.145 18 C 0.098 3.902 19 H 0.094 0.906 20 N -0.850 5.850 21 C -0.100 4.100 22 H 0.069 0.931 23 H 0.060 0.940 24 H 0.025 0.975 25 H 0.056 0.944 26 H 0.083 0.917 27 H -0.032 1.032 28 H 0.004 0.996 29 H 0.262 0.738 30 H 0.060 0.940 31 H 0.034 0.966 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.348 0.652 37 H 0.336 0.664 38 H 0.066 0.934 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.164 -0.485 15.238 15.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.068 4.068 3 N -0.264 5.264 4 C 0.081 3.919 5 C -0.559 4.559 6 H 0.078 0.922 7 C -0.196 4.196 8 N -0.575 5.575 9 Si 0.789 3.211 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.190 1.190 13 C -0.021 4.021 14 H 0.043 0.957 15 C -0.150 4.150 16 C -0.150 4.150 17 C -0.184 4.184 18 C -0.014 4.014 19 H 0.112 0.888 20 N -0.382 5.382 21 C -0.138 4.138 22 H 0.088 0.912 23 H 0.079 0.921 24 H 0.044 0.956 25 H 0.074 0.926 26 H 0.101 0.899 27 H -0.015 1.015 28 H 0.022 0.978 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.161 0.839 37 H 0.150 0.850 38 H 0.085 0.915 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.244 -1.204 15.146 15.196 hybrid contribution -0.471 1.000 -1.481 1.848 sum -0.227 -0.204 13.665 13.669 Atomic orbital electron populations 1.22249 0.98595 1.02020 1.00521 1.22016 0.92770 0.90607 1.01449 1.62287 1.59175 1.02469 1.02456 1.19361 0.92446 0.93325 0.86739 1.21499 1.25110 1.17908 0.91350 0.92248 1.25864 0.95980 0.95913 1.01864 1.70087 1.36398 1.29384 1.21647 0.85453 0.79078 0.78180 0.78344 1.19936 1.20794 1.19005 1.21558 0.95729 0.93870 0.90960 0.95692 1.21583 1.00442 0.95258 0.97713 1.21485 1.00634 0.98829 0.94089 1.22297 1.02055 0.96946 0.97135 1.21399 0.87270 0.94865 0.97883 0.88839 1.58990 1.11912 1.59368 1.07908 1.21642 1.01101 0.98652 0.92447 0.91232 0.92111 0.95573 0.92561 0.89882 1.01466 0.97849 0.92876 0.92171 0.94698 0.92458 0.91069 0.90246 0.91135 0.83875 0.84981 0.91533 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.57 9.05 71.98 0.65 -5.92 16 2 C 0.06 2.36 5.33 86.30 0.46 2.82 16 3 N -0.54 -23.57 4.59 -875.52 -4.02 -27.59 16 4 C 0.21 11.21 4.34 85.56 0.37 11.58 16 5 C -0.52 -30.07 8.30 25.60 0.21 -29.85 16 6 H 0.06 3.39 7.12 -2.91 -0.02 3.37 16 7 C 0.00 0.08 5.46 84.66 0.46 0.55 16 8 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 9 Si 0.96 45.19 29.54 68.60 2.03 47.21 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 13 C 0.09 3.09 1.05 44.92 0.05 3.13 16 14 H 0.03 0.95 5.05 -2.39 -0.01 0.94 16 15 C -0.11 -3.81 5.09 30.59 0.16 -3.66 16 16 C -0.11 -2.78 5.66 30.59 0.17 -2.61 16 17 C -0.15 -2.89 5.61 30.60 0.17 -2.72 16 18 C 0.10 2.13 3.69 44.92 0.17 2.29 16 19 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 20 N -0.85 -18.54 9.12 -168.68 -1.54 -20.08 16 21 C -0.10 -2.81 4.33 30.60 0.13 -2.68 16 22 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 23 H 0.06 2.15 6.03 -2.39 -0.01 2.13 16 24 H 0.03 1.14 6.69 -2.39 -0.02 1.13 16 25 H 0.06 2.47 6.61 -2.39 -0.02 2.46 16 26 H 0.08 2.80 6.30 -2.39 -0.02 2.78 16 27 H -0.03 -1.91 6.41 -2.39 -0.02 -1.93 16 28 H 0.00 0.21 6.09 -2.39 -0.01 0.19 16 29 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 30 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.03 1.41 6.35 -2.39 -0.02 1.39 16 32 H 0.06 1.39 6.76 -2.39 -0.02 1.37 16 33 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.35 5.88 9.04 -89.69 -0.81 5.07 16 37 H 0.34 8.32 5.45 -89.69 -0.49 7.83 16 38 H 0.07 1.92 6.00 -2.39 -0.01 1.91 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -63.95 284.94 -0.50 -64.45 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -0.25 Total: 19.95 kcal Atomic # 6 Polarization: -30.06 SS G_CDS: 3.00 Total: -27.06 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -5.27 Total: -104.55 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -63.95 -0.50 -64.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223151718.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.324 kcal (2) G-P(sol) polarization free energy of solvation -63.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds