Wall clock time and date at job start Mon Mar 30 2020 03:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46899 * 109.46840 * 2 1 4 4 C 1.46908 * 110.99866 * 73.06170 * 3 2 1 5 5 C 1.50698 * 109.47152 * 285.53282 * 4 3 2 6 6 H 1.08008 * 119.99723 * 358.18602 * 5 4 3 7 7 C 1.37874 * 120.00271 * 178.18754 * 5 4 3 8 8 N 1.31517 * 119.99741 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00316 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46890 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47155 * 119.99449 * 9 7 5 12 12 H 1.48493 * 109.47106 * 239.99955 * 9 7 5 13 13 C 1.46899 * 111.00224 * 197.01350 * 3 2 1 14 14 H 1.09003 * 109.47007 * 186.05008 * 13 3 2 15 15 C 1.52996 * 109.47078 * 306.04775 * 13 3 2 16 16 C 1.53002 * 109.47232 * 179.97438 * 15 13 3 17 17 C 1.52999 * 109.46959 * 299.99895 * 16 15 13 18 18 C 1.53005 * 109.46924 * 60.00131 * 17 16 15 19 19 H 1.09002 * 109.47383 * 60.00029 * 18 17 16 20 20 N 1.46901 * 109.47138 * 180.02562 * 18 17 16 21 21 C 1.52998 * 109.46919 * 66.04985 * 13 3 2 22 22 H 1.09000 * 109.46721 * 168.73564 * 1 2 3 23 23 H 1.09003 * 109.47314 * 288.73249 * 1 2 3 24 24 H 1.09004 * 109.47629 * 48.74045 * 1 2 3 25 25 H 1.09002 * 109.47181 * 240.00271 * 2 1 3 26 26 H 1.09001 * 109.47590 * 120.00145 * 2 1 3 27 27 H 1.08994 * 109.46954 * 45.53337 * 4 3 2 28 28 H 1.08995 * 109.47017 * 165.53395 * 4 3 2 29 29 H 0.97004 * 119.99558 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47208 * 59.99724 * 15 13 3 31 31 H 1.08997 * 109.47290 * 299.99714 * 15 13 3 32 32 H 1.08997 * 109.47444 * 180.02562 * 16 15 13 33 33 H 1.09002 * 109.47204 * 59.99778 * 16 15 13 34 34 H 1.09000 * 109.47570 * 179.97438 * 17 16 15 35 35 H 1.08996 * 109.47684 * 300.00255 * 17 16 15 36 36 H 1.00902 * 110.99895 * 299.99940 * 20 18 17 37 37 H 1.00900 * 111.00358 * 63.95057 * 20 18 17 38 38 H 1.09002 * 109.46785 * 299.99919 * 21 13 3 39 39 H 1.09000 * 109.47405 * 60.00174 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8183 2.0145 1.3120 5 6 0.3590 2.3446 1.4923 6 1 -0.3436 2.1369 0.6987 7 6 -0.0793 2.9116 2.6701 8 7 0.7763 3.1639 3.6366 9 14 -1.8881 3.3213 2.8933 10 1 -2.6361 2.9430 1.6676 11 1 -2.4265 2.5685 4.0546 12 1 -2.0393 4.7787 3.1348 13 6 3.4314 1.4443 -0.4013 14 1 3.7983 2.4647 -0.2898 15 6 4.2535 0.5071 0.4856 16 6 5.7239 0.5684 0.0673 17 6 5.8569 0.1348 -1.3939 18 6 5.0348 1.0721 -2.2808 19 1 5.4020 2.0924 -2.1698 20 7 5.1620 0.6554 -3.6838 21 6 3.5649 1.0112 -1.8626 22 1 -0.3633 -1.0079 -0.2007 23 1 -0.3634 0.3300 0.9732 24 1 -0.3634 0.6777 -0.7725 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 2.1351 1.3278 2.0969 28 1 2.4076 2.9296 1.3702 29 1 0.4678 3.5625 4.4655 30 1 3.8866 -0.5133 0.3742 31 1 4.1584 0.8157 1.5267 32 1 6.3096 -0.0996 0.6988 33 1 6.0911 1.5887 0.1784 34 1 6.9044 0.1788 -1.6922 35 1 5.4898 -0.8855 -1.5051 36 1 6.1246 0.6870 -3.9845 37 1 4.7690 -0.2630 -3.8253 38 1 3.1980 -0.0092 -1.9740 39 1 2.9793 1.6789 -2.4944 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223151772.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:29 Heat of formation + Delta-G solvation = -13.820779 kcal Electronic energy + Delta-G solvation = -16705.305889 eV Core-core repulsion = 14260.856031 eV Total energy + Delta-G solvation = -2444.449859 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.22997 -36.20475 -33.08462 -32.33476 -30.41940 -28.93573 -27.52657 -26.10049 -22.45959 -22.08480 -21.83739 -20.18056 -18.68529 -16.48017 -15.84631 -15.28156 -14.77810 -14.23110 -14.19472 -13.91495 -13.63004 -13.42920 -12.76605 -12.41178 -12.11575 -11.89800 -11.52751 -11.14252 -11.07246 -11.01439 -10.86014 -10.70602 -10.55339 -10.37862 -10.13869 -10.10153 -9.99966 -9.27548 -8.99263 -8.64615 -8.34503 -7.13798 -5.97260 -3.95511 3.33406 3.41212 3.45956 4.42603 4.53378 4.79609 4.88295 5.14179 5.30974 5.37197 5.41816 5.45876 5.65612 5.70228 5.78715 5.90342 5.97018 6.08625 6.15971 6.24942 6.25393 6.36489 6.41681 6.47216 6.62144 6.73727 6.79463 6.96281 7.15627 7.26818 7.40980 7.42943 7.44235 7.91058 8.19564 8.29840 8.63957 9.11517 9.66302 11.13502 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.041836 B = 0.006735 C = 0.006334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.122185 B = 4156.526701 C = 4419.767786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.066 3.934 3 N -0.530 5.530 4 C 0.193 3.807 5 C -0.501 4.501 6 H 0.074 0.926 7 C 0.051 3.949 8 N -0.901 5.901 9 Si 0.893 3.107 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.088 3.912 14 H 0.074 0.926 15 C -0.152 4.152 16 C -0.111 4.111 17 C -0.149 4.149 18 C 0.091 3.909 19 H 0.079 0.921 20 N -0.845 5.845 21 C -0.100 4.100 22 H 0.028 0.972 23 H 0.085 0.915 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.021 0.979 27 H -0.006 1.006 28 H 0.024 0.976 29 H 0.259 0.741 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.336 0.664 37 H 0.337 0.663 38 H 0.057 0.943 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.553 -6.828 -9.077 14.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.063 4.063 3 N -0.253 5.253 4 C 0.068 3.932 5 C -0.540 4.540 6 H 0.092 0.908 7 C -0.149 4.149 8 N -0.542 5.542 9 Si 0.721 3.279 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.022 4.022 14 H 0.093 0.907 15 C -0.191 4.191 16 C -0.150 4.150 17 C -0.189 4.189 18 C -0.021 4.021 19 H 0.097 0.903 20 N -0.372 5.372 21 C -0.138 4.138 22 H 0.047 0.953 23 H 0.104 0.896 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.040 0.960 27 H 0.012 0.988 28 H 0.042 0.958 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.076 0.924 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.788 -5.838 -9.423 13.547 hybrid contribution 0.237 -1.002 1.379 1.721 sum 8.025 -6.840 -8.044 13.262 Atomic orbital electron populations 1.22060 0.95358 0.98503 1.04607 1.21876 0.96349 0.89959 0.98071 1.62342 1.13885 1.15947 1.33158 1.19756 0.97380 0.93457 0.82611 1.21476 0.93472 1.38878 1.00160 0.90784 1.25008 0.97639 0.96141 0.96134 1.69978 1.33967 1.44406 1.05815 0.86517 0.85396 0.77991 0.78012 1.19589 1.21246 1.21136 1.21641 0.89243 0.98424 0.92885 0.90748 1.22282 0.94866 1.00834 1.01127 1.21407 0.97202 1.01223 0.95146 1.22388 0.99576 1.00005 0.96917 1.21482 0.96270 0.98480 0.85898 0.90283 1.58930 1.23756 1.33851 1.20679 1.21563 0.94070 1.01752 0.96398 0.95268 0.89600 0.92683 0.93243 0.96047 0.98784 0.95805 0.93167 0.92276 0.91477 0.92659 0.91997 0.92740 0.92429 0.85229 0.85092 0.92426 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.50 37.16 0.32 -2.61 16 2 C 0.07 1.28 4.38 -3.83 -0.02 1.26 16 3 N -0.53 -11.30 4.43 -228.09 -1.01 -12.31 16 4 C 0.19 4.97 4.11 -4.97 -0.02 4.95 16 5 C -0.50 -13.84 7.08 -34.44 -0.24 -14.08 16 6 H 0.07 2.02 5.59 -52.48 -0.29 1.72 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -26.81 13.29 55.43 0.74 -26.08 16 9 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.09 1.56 2.18 -67.72 -0.15 1.42 16 14 H 0.07 1.40 7.84 -51.93 -0.41 0.99 16 15 C -0.15 -2.47 4.53 -26.73 -0.12 -2.59 16 16 C -0.11 -1.45 5.92 -26.73 -0.16 -1.61 16 17 C -0.15 -1.70 5.49 -26.73 -0.15 -1.85 16 18 C 0.09 1.12 3.25 -67.73 -0.22 0.90 16 19 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 20 N -0.84 -9.13 9.25 -4.68 -0.04 -9.18 16 21 C -0.10 -1.50 4.71 -26.76 -0.13 -1.63 16 22 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.09 1.94 5.76 -51.93 -0.30 1.64 16 24 H 0.05 1.11 7.77 -51.93 -0.40 0.70 16 25 H 0.05 0.85 5.92 -51.93 -0.31 0.55 16 26 H 0.02 0.43 6.96 -51.93 -0.36 0.07 16 27 H -0.01 -0.16 7.17 -51.93 -0.37 -0.53 16 28 H 0.02 0.66 7.76 -51.93 -0.40 0.26 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.06 0.96 6.71 -51.93 -0.35 0.61 16 31 H 0.07 1.25 7.13 -51.93 -0.37 0.88 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.34 2.98 9.04 -39.29 -0.36 2.62 16 37 H 0.34 3.32 8.98 -39.29 -0.35 2.97 16 38 H 0.06 0.86 6.27 -51.93 -0.33 0.53 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 291.64 15.07 4.39 4.39 Total: -1.00 -28.97 291.64 -8.62 -37.59 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.69 Total: 3.43 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -0.98 Total: -14.48 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.32 Total: -47.57 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.97 -8.62 -37.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223151772.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.767 kcal (2) G-P(sol) polarization free energy of solvation -28.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds