Wall clock time and date at job start Mon Mar 30 2020 03:07:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46899 * 109.46840 * 2 1
4 4 C 1.46908 * 110.99866 * 73.06170 * 3 2 1
5 5 C 1.50698 * 109.47152 * 285.53282 * 4 3 2
6 6 H 1.08008 * 119.99723 * 358.18602 * 5 4 3
7 7 C 1.37874 * 120.00271 * 178.18754 * 5 4 3
8 8 N 1.31517 * 119.99741 * 359.97438 * 7 5 4
9 9 Si 1.86802 * 120.00316 * 179.97438 * 7 5 4
10 10 H 1.48499 * 109.46890 * 359.97438 * 9 7 5
11 11 H 1.48502 * 109.47155 * 119.99449 * 9 7 5
12 12 H 1.48493 * 109.47106 * 239.99955 * 9 7 5
13 13 C 1.46899 * 111.00224 * 197.01350 * 3 2 1
14 14 H 1.09003 * 109.47007 * 186.05008 * 13 3 2
15 15 C 1.52996 * 109.47078 * 306.04775 * 13 3 2
16 16 C 1.53002 * 109.47232 * 179.97438 * 15 13 3
17 17 C 1.52999 * 109.46959 * 299.99895 * 16 15 13
18 18 C 1.53005 * 109.46924 * 60.00131 * 17 16 15
19 19 H 1.09002 * 109.47383 * 60.00029 * 18 17 16
20 20 N 1.46901 * 109.47138 * 180.02562 * 18 17 16
21 21 C 1.52998 * 109.46919 * 66.04985 * 13 3 2
22 22 H 1.09000 * 109.46721 * 168.73564 * 1 2 3
23 23 H 1.09003 * 109.47314 * 288.73249 * 1 2 3
24 24 H 1.09004 * 109.47629 * 48.74045 * 1 2 3
25 25 H 1.09002 * 109.47181 * 240.00271 * 2 1 3
26 26 H 1.09001 * 109.47590 * 120.00145 * 2 1 3
27 27 H 1.08994 * 109.46954 * 45.53337 * 4 3 2
28 28 H 1.08995 * 109.47017 * 165.53395 * 4 3 2
29 29 H 0.97004 * 119.99558 * 180.02562 * 8 7 5
30 30 H 1.09002 * 109.47208 * 59.99724 * 15 13 3
31 31 H 1.08997 * 109.47290 * 299.99714 * 15 13 3
32 32 H 1.08997 * 109.47444 * 180.02562 * 16 15 13
33 33 H 1.09002 * 109.47204 * 59.99778 * 16 15 13
34 34 H 1.09000 * 109.47570 * 179.97438 * 17 16 15
35 35 H 1.08996 * 109.47684 * 300.00255 * 17 16 15
36 36 H 1.00902 * 110.99895 * 299.99940 * 20 18 17
37 37 H 1.00900 * 111.00358 * 63.95057 * 20 18 17
38 38 H 1.09002 * 109.46785 * 299.99919 * 21 13 3
39 39 H 1.09000 * 109.47405 * 60.00174 * 21 13 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0196 1.3850 0.0000
4 6 1.8183 2.0145 1.3120
5 6 0.3590 2.3446 1.4923
6 1 -0.3436 2.1369 0.6987
7 6 -0.0793 2.9116 2.6701
8 7 0.7763 3.1639 3.6366
9 14 -1.8881 3.3213 2.8933
10 1 -2.6361 2.9430 1.6676
11 1 -2.4265 2.5685 4.0546
12 1 -2.0393 4.7787 3.1348
13 6 3.4314 1.4443 -0.4013
14 1 3.7983 2.4647 -0.2898
15 6 4.2535 0.5071 0.4856
16 6 5.7239 0.5684 0.0673
17 6 5.8569 0.1348 -1.3939
18 6 5.0348 1.0721 -2.2808
19 1 5.4020 2.0924 -2.1698
20 7 5.1620 0.6554 -3.6838
21 6 3.5649 1.0112 -1.8626
22 1 -0.3633 -1.0079 -0.2007
23 1 -0.3634 0.3300 0.9732
24 1 -0.3634 0.6777 -0.7725
25 1 1.8933 -0.5138 -0.8900
26 1 1.8934 -0.5138 0.8899
27 1 2.1351 1.3278 2.0969
28 1 2.4076 2.9296 1.3702
29 1 0.4678 3.5625 4.4655
30 1 3.8866 -0.5133 0.3742
31 1 4.1584 0.8157 1.5267
32 1 6.3096 -0.0996 0.6988
33 1 6.0911 1.5887 0.1784
34 1 6.9044 0.1788 -1.6922
35 1 5.4898 -0.8855 -1.5051
36 1 6.1246 0.6870 -3.9845
37 1 4.7690 -0.2630 -3.8253
38 1 3.1980 -0.0092 -1.9740
39 1 2.9793 1.6789 -2.4944
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000223151772.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:07:29
Heat of formation + Delta-G solvation = -13.820779 kcal
Electronic energy + Delta-G solvation = -16705.305889 eV
Core-core repulsion = 14260.856031 eV
Total energy + Delta-G solvation = -2444.449859 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-39.22997 -36.20475 -33.08462 -32.33476 -30.41940 -28.93573 -27.52657 -26.10049
-22.45959 -22.08480 -21.83739 -20.18056 -18.68529 -16.48017 -15.84631 -15.28156
-14.77810 -14.23110 -14.19472 -13.91495 -13.63004 -13.42920 -12.76605 -12.41178
-12.11575 -11.89800 -11.52751 -11.14252 -11.07246 -11.01439 -10.86014 -10.70602
-10.55339 -10.37862 -10.13869 -10.10153 -9.99966 -9.27548 -8.99263 -8.64615
-8.34503 -7.13798 -5.97260 -3.95511 3.33406 3.41212 3.45956 4.42603
4.53378 4.79609 4.88295 5.14179 5.30974 5.37197 5.41816 5.45876
5.65612 5.70228 5.78715 5.90342 5.97018 6.08625 6.15971 6.24942
6.25393 6.36489 6.41681 6.47216 6.62144 6.73727 6.79463 6.96281
7.15627 7.26818 7.40980 7.42943 7.44235 7.91058 8.19564 8.29840
8.63957 9.11517 9.66302 11.13502
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.041836 B = 0.006735 C = 0.006334
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 669.122185 B = 4156.526701 C = 4419.767786
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.066 3.934
3 N -0.530 5.530
4 C 0.193 3.807
5 C -0.501 4.501
6 H 0.074 0.926
7 C 0.051 3.949
8 N -0.901 5.901
9 Si 0.893 3.107
10 H -0.271 1.271
11 H -0.286 1.286
12 H -0.285 1.285
13 C 0.088 3.912
14 H 0.074 0.926
15 C -0.152 4.152
16 C -0.111 4.111
17 C -0.149 4.149
18 C 0.091 3.909
19 H 0.079 0.921
20 N -0.845 5.845
21 C -0.100 4.100
22 H 0.028 0.972
23 H 0.085 0.915
24 H 0.054 0.946
25 H 0.049 0.951
26 H 0.021 0.979
27 H -0.006 1.006
28 H 0.024 0.976
29 H 0.259 0.741
30 H 0.059 0.941
31 H 0.067 0.933
32 H 0.055 0.945
33 H 0.061 0.939
34 H 0.054 0.946
35 H 0.057 0.943
36 H 0.336 0.664
37 H 0.337 0.663
38 H 0.057 0.943
39 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.553 -6.828 -9.077 14.219
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.063 4.063
3 N -0.253 5.253
4 C 0.068 3.932
5 C -0.540 4.540
6 H 0.092 0.908
7 C -0.149 4.149
8 N -0.542 5.542
9 Si 0.721 3.279
10 H -0.196 1.196
11 H -0.212 1.212
12 H -0.211 1.211
13 C -0.022 4.022
14 H 0.093 0.907
15 C -0.191 4.191
16 C -0.150 4.150
17 C -0.189 4.189
18 C -0.021 4.021
19 H 0.097 0.903
20 N -0.372 5.372
21 C -0.138 4.138
22 H 0.047 0.953
23 H 0.104 0.896
24 H 0.073 0.927
25 H 0.068 0.932
26 H 0.040 0.960
27 H 0.012 0.988
28 H 0.042 0.958
29 H 0.068 0.932
30 H 0.077 0.923
31 H 0.085 0.915
32 H 0.073 0.927
33 H 0.080 0.920
34 H 0.073 0.927
35 H 0.076 0.924
36 H 0.148 0.852
37 H 0.149 0.851
38 H 0.076 0.924
39 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 7.788 -5.838 -9.423 13.547
hybrid contribution 0.237 -1.002 1.379 1.721
sum 8.025 -6.840 -8.044 13.262
Atomic orbital electron populations
1.22060 0.95358 0.98503 1.04607 1.21876 0.96349 0.89959 0.98071
1.62342 1.13885 1.15947 1.33158 1.19756 0.97380 0.93457 0.82611
1.21476 0.93472 1.38878 1.00160 0.90784 1.25008 0.97639 0.96141
0.96134 1.69978 1.33967 1.44406 1.05815 0.86517 0.85396 0.77991
0.78012 1.19589 1.21246 1.21136 1.21641 0.89243 0.98424 0.92885
0.90748 1.22282 0.94866 1.00834 1.01127 1.21407 0.97202 1.01223
0.95146 1.22388 0.99576 1.00005 0.96917 1.21482 0.96270 0.98480
0.85898 0.90283 1.58930 1.23756 1.33851 1.20679 1.21563 0.94070
1.01752 0.96398 0.95268 0.89600 0.92683 0.93243 0.96047 0.98784
0.95805 0.93167 0.92276 0.91477 0.92659 0.91997 0.92740 0.92429
0.85229 0.85092 0.92426 0.90692
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.92 8.50 37.16 0.32 -2.61 16
2 C 0.07 1.28 4.38 -3.83 -0.02 1.26 16
3 N -0.53 -11.30 4.43 -228.09 -1.01 -12.31 16
4 C 0.19 4.97 4.11 -4.97 -0.02 4.95 16
5 C -0.50 -13.84 7.08 -34.44 -0.24 -14.08 16
6 H 0.07 2.02 5.59 -52.48 -0.29 1.72 16
7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16
8 N -0.90 -26.81 13.29 55.43 0.74 -26.08 16
9 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16
10 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16
11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
13 C 0.09 1.56 2.18 -67.72 -0.15 1.42 16
14 H 0.07 1.40 7.84 -51.93 -0.41 0.99 16
15 C -0.15 -2.47 4.53 -26.73 -0.12 -2.59 16
16 C -0.11 -1.45 5.92 -26.73 -0.16 -1.61 16
17 C -0.15 -1.70 5.49 -26.73 -0.15 -1.85 16
18 C 0.09 1.12 3.25 -67.73 -0.22 0.90 16
19 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16
20 N -0.84 -9.13 9.25 -4.68 -0.04 -9.18 16
21 C -0.10 -1.50 4.71 -26.76 -0.13 -1.63 16
22 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16
23 H 0.09 1.94 5.76 -51.93 -0.30 1.64 16
24 H 0.05 1.11 7.77 -51.93 -0.40 0.70 16
25 H 0.05 0.85 5.92 -51.93 -0.31 0.55 16
26 H 0.02 0.43 6.96 -51.93 -0.36 0.07 16
27 H -0.01 -0.16 7.17 -51.93 -0.37 -0.53 16
28 H 0.02 0.66 7.76 -51.93 -0.40 0.26 16
29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16
30 H 0.06 0.96 6.71 -51.93 -0.35 0.61 16
31 H 0.07 1.25 7.13 -51.93 -0.37 0.88 16
32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
34 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16
35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16
36 H 0.34 2.98 9.04 -39.29 -0.36 2.62 16
37 H 0.34 3.32 8.98 -39.29 -0.35 2.97 16
38 H 0.06 0.86 6.27 -51.93 -0.33 0.53 16
39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16
LS Contribution 291.64 15.07 4.39 4.39
Total: -1.00 -28.97 291.64 -8.62 -37.59
By element:
Atomic # 1 Polarization: 10.12 SS G_CDS: -6.69 Total: 3.43 kcal
Atomic # 6 Polarization: -13.50 SS G_CDS: -0.98 Total: -14.48 kcal
Atomic # 7 Polarization: -47.25 SS G_CDS: -0.32 Total: -47.57 kcal
Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal
Total LS contribution 4.39 Total: 4.39 kcal
Total: -28.97 -8.62 -37.59 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000223151772.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.767 kcal
(2) G-P(sol) polarization free energy of solvation -28.969 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.202 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.588 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.821 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds