Wall clock time and date at job start Mon Mar 30 2020 03:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46899 * 109.46840 * 2 1 4 4 C 1.46908 * 110.99866 * 73.06170 * 3 2 1 5 5 C 1.50698 * 109.47152 * 285.53282 * 4 3 2 6 6 H 1.08008 * 119.99723 * 358.18602 * 5 4 3 7 7 C 1.37874 * 120.00271 * 178.18754 * 5 4 3 8 8 N 1.31517 * 119.99741 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00316 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46890 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47155 * 119.99449 * 9 7 5 12 12 H 1.48493 * 109.47106 * 239.99955 * 9 7 5 13 13 C 1.46899 * 111.00224 * 197.01350 * 3 2 1 14 14 H 1.09003 * 109.47007 * 186.05008 * 13 3 2 15 15 C 1.52996 * 109.47078 * 306.04775 * 13 3 2 16 16 C 1.53002 * 109.47232 * 179.97438 * 15 13 3 17 17 C 1.52999 * 109.46959 * 299.99895 * 16 15 13 18 18 C 1.53005 * 109.46924 * 60.00131 * 17 16 15 19 19 H 1.09002 * 109.47383 * 60.00029 * 18 17 16 20 20 N 1.46901 * 109.47138 * 180.02562 * 18 17 16 21 21 C 1.52998 * 109.46919 * 66.04985 * 13 3 2 22 22 H 1.09000 * 109.46721 * 168.73564 * 1 2 3 23 23 H 1.09003 * 109.47314 * 288.73249 * 1 2 3 24 24 H 1.09004 * 109.47629 * 48.74045 * 1 2 3 25 25 H 1.09002 * 109.47181 * 240.00271 * 2 1 3 26 26 H 1.09001 * 109.47590 * 120.00145 * 2 1 3 27 27 H 1.08994 * 109.46954 * 45.53337 * 4 3 2 28 28 H 1.08995 * 109.47017 * 165.53395 * 4 3 2 29 29 H 0.97004 * 119.99558 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47208 * 59.99724 * 15 13 3 31 31 H 1.08997 * 109.47290 * 299.99714 * 15 13 3 32 32 H 1.08997 * 109.47444 * 180.02562 * 16 15 13 33 33 H 1.09002 * 109.47204 * 59.99778 * 16 15 13 34 34 H 1.09000 * 109.47570 * 179.97438 * 17 16 15 35 35 H 1.08996 * 109.47684 * 300.00255 * 17 16 15 36 36 H 1.00902 * 110.99895 * 299.99940 * 20 18 17 37 37 H 1.00900 * 111.00358 * 63.95057 * 20 18 17 38 38 H 1.09002 * 109.46785 * 299.99919 * 21 13 3 39 39 H 1.09000 * 109.47405 * 60.00174 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8183 2.0145 1.3120 5 6 0.3590 2.3446 1.4923 6 1 -0.3436 2.1369 0.6987 7 6 -0.0793 2.9116 2.6701 8 7 0.7763 3.1639 3.6366 9 14 -1.8881 3.3213 2.8933 10 1 -2.6361 2.9430 1.6676 11 1 -2.4265 2.5685 4.0546 12 1 -2.0393 4.7787 3.1348 13 6 3.4314 1.4443 -0.4013 14 1 3.7983 2.4647 -0.2898 15 6 4.2535 0.5071 0.4856 16 6 5.7239 0.5684 0.0673 17 6 5.8569 0.1348 -1.3939 18 6 5.0348 1.0721 -2.2808 19 1 5.4020 2.0924 -2.1698 20 7 5.1620 0.6554 -3.6838 21 6 3.5649 1.0112 -1.8626 22 1 -0.3633 -1.0079 -0.2007 23 1 -0.3634 0.3300 0.9732 24 1 -0.3634 0.6777 -0.7725 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 2.1351 1.3278 2.0969 28 1 2.4076 2.9296 1.3702 29 1 0.4678 3.5625 4.4655 30 1 3.8866 -0.5133 0.3742 31 1 4.1584 0.8157 1.5267 32 1 6.3096 -0.0996 0.6988 33 1 6.0911 1.5887 0.1784 34 1 6.9044 0.1788 -1.6922 35 1 5.4898 -0.8855 -1.5051 36 1 6.1246 0.6870 -3.9845 37 1 4.7690 -0.2630 -3.8253 38 1 3.1980 -0.0092 -1.9740 39 1 2.9793 1.6789 -2.4944 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223151772.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:29 Heat of formation + Delta-G solvation = -34.418883 kcal Electronic energy + Delta-G solvation = -16706.199090 eV Core-core repulsion = 14260.856031 eV Total energy + Delta-G solvation = -2445.343059 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.58559 -37.64597 -34.76968 -33.89176 -31.83186 -30.61430 -28.83701 -27.82485 -24.35039 -23.59235 -23.01680 -21.46157 -20.14841 -18.53384 -16.99219 -16.62334 -16.57061 -15.84477 -15.55271 -15.36619 -15.02008 -14.65213 -14.22273 -14.06805 -13.55090 -13.29842 -13.12880 -13.03894 -12.73550 -12.59970 -12.39705 -12.25846 -11.99469 -11.90298 -11.62617 -11.51650 -11.40194 -11.07393 -10.90686 -10.52138 -9.51979 -8.89880 -8.14825 -6.21004 1.40798 1.41968 1.55123 2.42574 3.16899 3.23940 3.63474 3.75505 3.99245 4.13700 4.20001 4.23652 4.37826 4.48617 4.55793 4.58739 4.65859 4.70465 4.84699 4.88663 5.05365 5.07658 5.13366 5.16040 5.20296 5.23338 5.30263 5.36873 5.47160 5.53006 5.69875 5.76193 6.15009 6.30249 6.46326 6.69680 6.74156 6.94075 7.45847 8.96111 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.041836 B = 0.006735 C = 0.006334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.122185 B = 4156.526701 C = 4419.767786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.067 3.933 3 N -0.539 5.539 4 C 0.213 3.787 5 C -0.509 4.509 6 H 0.077 0.923 7 C -0.004 4.004 8 N -0.940 5.940 9 Si 0.962 3.038 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.282 1.282 13 C 0.085 3.915 14 H 0.054 0.946 15 C -0.144 4.144 16 C -0.107 4.107 17 C -0.139 4.139 18 C 0.098 3.902 19 H 0.071 0.929 20 N -0.847 5.847 21 C -0.087 4.087 22 H 0.063 0.937 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.081 0.919 26 H 0.011 0.989 27 H -0.035 1.035 28 H -0.008 1.008 29 H 0.261 0.739 30 H 0.063 0.937 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.350 0.650 37 H 0.345 0.655 38 H 0.065 0.935 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.700 -8.114 -10.870 16.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.061 4.061 3 N -0.262 5.262 4 C 0.086 3.914 5 C -0.548 4.548 6 H 0.095 0.905 7 C -0.201 4.201 8 N -0.582 5.582 9 Si 0.788 3.212 10 H -0.184 1.184 11 H -0.207 1.207 12 H -0.208 1.208 13 C -0.025 4.025 14 H 0.073 0.927 15 C -0.183 4.183 16 C -0.146 4.146 17 C -0.179 4.179 18 C -0.014 4.014 19 H 0.089 0.911 20 N -0.377 5.377 21 C -0.126 4.126 22 H 0.081 0.919 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.099 0.901 26 H 0.029 0.971 27 H -0.018 1.018 28 H 0.010 0.990 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.164 0.836 37 H 0.158 0.842 38 H 0.084 0.916 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.950 -7.139 -11.247 15.513 hybrid contribution 0.233 -0.617 1.906 2.017 sum 8.182 -7.756 -9.340 14.641 Atomic orbital electron populations 1.21956 0.95363 1.00305 1.02406 1.21932 0.96355 0.88818 0.98965 1.62280 1.16641 1.17232 1.30062 1.19349 0.96121 0.91709 0.84193 1.21796 0.94278 1.38407 1.00297 0.90459 1.25899 1.02291 0.96043 0.95848 1.70115 1.36213 1.45445 1.06416 0.85429 0.79831 0.77681 0.78309 1.18448 1.20657 1.20800 1.21713 0.87455 0.98052 0.95257 0.92732 1.22152 0.97264 1.00204 0.98687 1.21386 0.94581 1.01667 0.96977 1.22315 1.00870 0.99858 0.94826 1.21289 0.94221 0.98650 0.87240 0.91071 1.58834 1.25092 1.34558 1.19207 1.21416 0.96174 1.01450 0.93517 0.91855 0.92888 0.93232 0.90093 0.97122 1.01782 0.99038 0.93048 0.91828 0.94998 0.91250 0.92274 0.90303 0.91594 0.83585 0.84157 0.91607 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.51 8.50 71.98 0.61 -4.90 16 2 C 0.07 2.57 4.38 86.30 0.38 2.95 16 3 N -0.54 -23.49 4.43 -875.53 -3.88 -27.36 16 4 C 0.21 11.51 4.11 85.55 0.35 11.86 16 5 C -0.51 -28.89 7.08 25.60 0.18 -28.71 16 6 H 0.08 4.26 5.59 -2.91 -0.02 4.24 16 7 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 8 N -0.94 -57.71 13.29 21.45 0.28 -57.43 16 9 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 10 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 C 0.08 3.05 2.18 44.91 0.10 3.15 16 14 H 0.05 2.16 7.84 -2.39 -0.02 2.14 16 15 C -0.14 -4.71 4.53 30.59 0.14 -4.58 16 16 C -0.11 -2.65 5.92 30.59 0.18 -2.47 16 17 C -0.14 -2.74 5.49 30.60 0.17 -2.57 16 18 C 0.10 2.21 3.25 44.90 0.15 2.36 16 19 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 20 N -0.85 -15.69 9.25 -168.73 -1.56 -17.25 16 21 C -0.09 -2.51 4.71 30.58 0.14 -2.37 16 22 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.05 2.39 5.76 -2.39 -0.01 2.38 16 24 H 0.05 1.94 7.77 -2.38 -0.02 1.92 16 25 H 0.08 2.60 5.92 -2.39 -0.01 2.59 16 26 H 0.01 0.43 6.96 -2.39 -0.02 0.41 16 27 H -0.04 -2.10 7.17 -2.39 -0.02 -2.11 16 28 H -0.01 -0.51 7.76 -2.39 -0.02 -0.52 16 29 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 30 H 0.06 2.01 6.71 -2.39 -0.02 1.99 16 31 H 0.03 1.25 7.13 -2.39 -0.02 1.23 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.35 4.98 9.04 -89.69 -0.81 4.17 16 37 H 0.35 5.59 8.98 -89.69 -0.81 4.78 16 38 H 0.07 1.78 6.27 -2.39 -0.01 1.77 16 39 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -64.20 291.64 -0.85 -65.05 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -0.58 Total: 15.02 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: 2.86 Total: -25.05 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -5.15 Total: -102.04 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -64.20 -0.85 -65.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223151772.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.635 kcal (2) G-P(sol) polarization free energy of solvation -64.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds