Wall clock time and date at job start Mon Mar 30 2020 03:07:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46899 * 109.46840 * 2 1
4 4 C 1.46908 * 110.99866 * 73.06170 * 3 2 1
5 5 C 1.50698 * 109.47152 * 285.53282 * 4 3 2
6 6 H 1.08008 * 119.99723 * 358.18602 * 5 4 3
7 7 C 1.37874 * 120.00271 * 178.18754 * 5 4 3
8 8 N 1.31517 * 119.99741 * 359.97438 * 7 5 4
9 9 Si 1.86802 * 120.00316 * 179.97438 * 7 5 4
10 10 H 1.48499 * 109.46890 * 359.97438 * 9 7 5
11 11 H 1.48502 * 109.47155 * 119.99449 * 9 7 5
12 12 H 1.48493 * 109.47106 * 239.99955 * 9 7 5
13 13 C 1.46899 * 111.00224 * 197.01350 * 3 2 1
14 14 H 1.09003 * 109.47007 * 186.05008 * 13 3 2
15 15 C 1.52996 * 109.47078 * 306.04775 * 13 3 2
16 16 C 1.53002 * 109.47232 * 179.97438 * 15 13 3
17 17 C 1.52999 * 109.46959 * 299.99895 * 16 15 13
18 18 C 1.53005 * 109.46924 * 60.00131 * 17 16 15
19 19 H 1.09002 * 109.47383 * 60.00029 * 18 17 16
20 20 N 1.46901 * 109.47138 * 180.02562 * 18 17 16
21 21 C 1.52998 * 109.46919 * 66.04985 * 13 3 2
22 22 H 1.09000 * 109.46721 * 168.73564 * 1 2 3
23 23 H 1.09003 * 109.47314 * 288.73249 * 1 2 3
24 24 H 1.09004 * 109.47629 * 48.74045 * 1 2 3
25 25 H 1.09002 * 109.47181 * 240.00271 * 2 1 3
26 26 H 1.09001 * 109.47590 * 120.00145 * 2 1 3
27 27 H 1.08994 * 109.46954 * 45.53337 * 4 3 2
28 28 H 1.08995 * 109.47017 * 165.53395 * 4 3 2
29 29 H 0.97004 * 119.99558 * 180.02562 * 8 7 5
30 30 H 1.09002 * 109.47208 * 59.99724 * 15 13 3
31 31 H 1.08997 * 109.47290 * 299.99714 * 15 13 3
32 32 H 1.08997 * 109.47444 * 180.02562 * 16 15 13
33 33 H 1.09002 * 109.47204 * 59.99778 * 16 15 13
34 34 H 1.09000 * 109.47570 * 179.97438 * 17 16 15
35 35 H 1.08996 * 109.47684 * 300.00255 * 17 16 15
36 36 H 1.00902 * 110.99895 * 299.99940 * 20 18 17
37 37 H 1.00900 * 111.00358 * 63.95057 * 20 18 17
38 38 H 1.09002 * 109.46785 * 299.99919 * 21 13 3
39 39 H 1.09000 * 109.47405 * 60.00174 * 21 13 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0196 1.3850 0.0000
4 6 1.8183 2.0145 1.3120
5 6 0.3590 2.3446 1.4923
6 1 -0.3436 2.1369 0.6987
7 6 -0.0793 2.9116 2.6701
8 7 0.7763 3.1639 3.6366
9 14 -1.8881 3.3213 2.8933
10 1 -2.6361 2.9430 1.6676
11 1 -2.4265 2.5685 4.0546
12 1 -2.0393 4.7787 3.1348
13 6 3.4314 1.4443 -0.4013
14 1 3.7983 2.4647 -0.2898
15 6 4.2535 0.5071 0.4856
16 6 5.7239 0.5684 0.0673
17 6 5.8569 0.1348 -1.3939
18 6 5.0348 1.0721 -2.2808
19 1 5.4020 2.0924 -2.1698
20 7 5.1620 0.6554 -3.6838
21 6 3.5649 1.0112 -1.8626
22 1 -0.3633 -1.0079 -0.2007
23 1 -0.3634 0.3300 0.9732
24 1 -0.3634 0.6777 -0.7725
25 1 1.8933 -0.5138 -0.8900
26 1 1.8934 -0.5138 0.8899
27 1 2.1351 1.3278 2.0969
28 1 2.4076 2.9296 1.3702
29 1 0.4678 3.5625 4.4655
30 1 3.8866 -0.5133 0.3742
31 1 4.1584 0.8157 1.5267
32 1 6.3096 -0.0996 0.6988
33 1 6.0911 1.5887 0.1784
34 1 6.9044 0.1788 -1.6922
35 1 5.4898 -0.8855 -1.5051
36 1 6.1246 0.6870 -3.9845
37 1 4.7690 -0.2630 -3.8253
38 1 3.1980 -0.0092 -1.9740
39 1 2.9793 1.6789 -2.4944
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000223151772.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:07:29
Heat of formation + Delta-G solvation = -34.418883 kcal
Electronic energy + Delta-G solvation = -16706.199090 eV
Core-core repulsion = 14260.856031 eV
Total energy + Delta-G solvation = -2445.343059 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-40.58559 -37.64597 -34.76968 -33.89176 -31.83186 -30.61430 -28.83701 -27.82485
-24.35039 -23.59235 -23.01680 -21.46157 -20.14841 -18.53384 -16.99219 -16.62334
-16.57061 -15.84477 -15.55271 -15.36619 -15.02008 -14.65213 -14.22273 -14.06805
-13.55090 -13.29842 -13.12880 -13.03894 -12.73550 -12.59970 -12.39705 -12.25846
-11.99469 -11.90298 -11.62617 -11.51650 -11.40194 -11.07393 -10.90686 -10.52138
-9.51979 -8.89880 -8.14825 -6.21004 1.40798 1.41968 1.55123 2.42574
3.16899 3.23940 3.63474 3.75505 3.99245 4.13700 4.20001 4.23652
4.37826 4.48617 4.55793 4.58739 4.65859 4.70465 4.84699 4.88663
5.05365 5.07658 5.13366 5.16040 5.20296 5.23338 5.30263 5.36873
5.47160 5.53006 5.69875 5.76193 6.15009 6.30249 6.46326 6.69680
6.74156 6.94075 7.45847 8.96111
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.041836 B = 0.006735 C = 0.006334
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 669.122185 B = 4156.526701 C = 4419.767786
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.067 3.933
3 N -0.539 5.539
4 C 0.213 3.787
5 C -0.509 4.509
6 H 0.077 0.923
7 C -0.004 4.004
8 N -0.940 5.940
9 Si 0.962 3.038
10 H -0.261 1.261
11 H -0.281 1.281
12 H -0.282 1.282
13 C 0.085 3.915
14 H 0.054 0.946
15 C -0.144 4.144
16 C -0.107 4.107
17 C -0.139 4.139
18 C 0.098 3.902
19 H 0.071 0.929
20 N -0.847 5.847
21 C -0.087 4.087
22 H 0.063 0.937
23 H 0.052 0.948
24 H 0.049 0.951
25 H 0.081 0.919
26 H 0.011 0.989
27 H -0.035 1.035
28 H -0.008 1.008
29 H 0.261 0.739
30 H 0.063 0.937
31 H 0.031 0.969
32 H 0.069 0.931
33 H 0.058 0.942
34 H 0.078 0.922
35 H 0.065 0.935
36 H 0.350 0.650
37 H 0.345 0.655
38 H 0.065 0.935
39 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.700 -8.114 -10.870 16.115
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.061 4.061
3 N -0.262 5.262
4 C 0.086 3.914
5 C -0.548 4.548
6 H 0.095 0.905
7 C -0.201 4.201
8 N -0.582 5.582
9 Si 0.788 3.212
10 H -0.184 1.184
11 H -0.207 1.207
12 H -0.208 1.208
13 C -0.025 4.025
14 H 0.073 0.927
15 C -0.183 4.183
16 C -0.146 4.146
17 C -0.179 4.179
18 C -0.014 4.014
19 H 0.089 0.911
20 N -0.377 5.377
21 C -0.126 4.126
22 H 0.081 0.919
23 H 0.071 0.929
24 H 0.068 0.932
25 H 0.099 0.901
26 H 0.029 0.971
27 H -0.018 1.018
28 H 0.010 0.990
29 H 0.070 0.930
30 H 0.082 0.918
31 H 0.050 0.950
32 H 0.088 0.912
33 H 0.077 0.923
34 H 0.097 0.903
35 H 0.084 0.916
36 H 0.164 0.836
37 H 0.158 0.842
38 H 0.084 0.916
39 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 7.950 -7.139 -11.247 15.513
hybrid contribution 0.233 -0.617 1.906 2.017
sum 8.182 -7.756 -9.340 14.641
Atomic orbital electron populations
1.21956 0.95363 1.00305 1.02406 1.21932 0.96355 0.88818 0.98965
1.62280 1.16641 1.17232 1.30062 1.19349 0.96121 0.91709 0.84193
1.21796 0.94278 1.38407 1.00297 0.90459 1.25899 1.02291 0.96043
0.95848 1.70115 1.36213 1.45445 1.06416 0.85429 0.79831 0.77681
0.78309 1.18448 1.20657 1.20800 1.21713 0.87455 0.98052 0.95257
0.92732 1.22152 0.97264 1.00204 0.98687 1.21386 0.94581 1.01667
0.96977 1.22315 1.00870 0.99858 0.94826 1.21289 0.94221 0.98650
0.87240 0.91071 1.58834 1.25092 1.34558 1.19207 1.21416 0.96174
1.01450 0.93517 0.91855 0.92888 0.93232 0.90093 0.97122 1.01782
0.99038 0.93048 0.91828 0.94998 0.91250 0.92274 0.90303 0.91594
0.83585 0.84157 0.91607 0.92282
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.51 8.50 71.98 0.61 -4.90 16
2 C 0.07 2.57 4.38 86.30 0.38 2.95 16
3 N -0.54 -23.49 4.43 -875.53 -3.88 -27.36 16
4 C 0.21 11.51 4.11 85.55 0.35 11.86 16
5 C -0.51 -28.89 7.08 25.60 0.18 -28.71 16
6 H 0.08 4.26 5.59 -2.91 -0.02 4.24 16
7 C 0.00 -0.23 5.46 84.65 0.46 0.23 16
8 N -0.94 -57.71 13.29 21.45 0.28 -57.43 16
9 Si 0.96 44.98 29.54 68.60 2.03 47.01 16
10 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16
11 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16
12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16
13 C 0.08 3.05 2.18 44.91 0.10 3.15 16
14 H 0.05 2.16 7.84 -2.39 -0.02 2.14 16
15 C -0.14 -4.71 4.53 30.59 0.14 -4.58 16
16 C -0.11 -2.65 5.92 30.59 0.18 -2.47 16
17 C -0.14 -2.74 5.49 30.60 0.17 -2.57 16
18 C 0.10 2.21 3.25 44.90 0.15 2.36 16
19 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16
20 N -0.85 -15.69 9.25 -168.73 -1.56 -17.25 16
21 C -0.09 -2.51 4.71 30.58 0.14 -2.37 16
22 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16
23 H 0.05 2.39 5.76 -2.39 -0.01 2.38 16
24 H 0.05 1.94 7.77 -2.38 -0.02 1.92 16
25 H 0.08 2.60 5.92 -2.39 -0.01 2.59 16
26 H 0.01 0.43 6.96 -2.39 -0.02 0.41 16
27 H -0.04 -2.10 7.17 -2.39 -0.02 -2.11 16
28 H -0.01 -0.51 7.76 -2.39 -0.02 -0.52 16
29 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16
30 H 0.06 2.01 6.71 -2.39 -0.02 1.99 16
31 H 0.03 1.25 7.13 -2.39 -0.02 1.23 16
32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16
33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16
34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16
35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16
36 H 0.35 4.98 9.04 -89.69 -0.81 4.17 16
37 H 0.35 5.59 8.98 -89.69 -0.81 4.78 16
38 H 0.07 1.78 6.27 -2.39 -0.01 1.77 16
39 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16
Total: -1.00 -64.20 291.64 -0.85 -65.05
By element:
Atomic # 1 Polarization: 15.61 SS G_CDS: -0.58 Total: 15.02 kcal
Atomic # 6 Polarization: -27.91 SS G_CDS: 2.86 Total: -25.05 kcal
Atomic # 7 Polarization: -96.89 SS G_CDS: -5.15 Total: -102.04 kcal
Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal
Total: -64.20 -0.85 -65.05 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000223151772.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.635 kcal
(2) G-P(sol) polarization free energy of solvation -64.204 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.568 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.851 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.054 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.419 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds