Wall clock time and date at job start Mon Mar 30 2020 03:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47443 * 111.00236 * 2 1 4 4 C 1.54315 * 107.23364 * 123.25732 * 3 2 1 5 5 C 1.55139 * 103.02067 * 22.28615 * 4 3 2 6 6 C 1.47850 * 111.00178 * 120.84459 * 2 1 3 7 7 H 1.09006 * 110.36855 * 332.57539 * 6 2 1 8 8 C 1.53004 * 110.37334 * 94.80428 * 6 2 1 9 9 N 1.46901 * 109.47096 * 303.54561 * 8 6 2 10 10 C 1.46897 * 110.99749 * 180.02562 * 9 8 6 11 11 C 1.52995 * 109.47075 * 180.02562 * 10 9 8 12 12 C 1.53007 * 109.47329 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.46894 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00599 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99675 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00210 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00019 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.46845 * 269.99914 * 17 15 13 19 19 H 1.48503 * 109.47399 * 29.99403 * 17 15 13 20 20 H 1.48498 * 109.47295 * 150.00010 * 17 15 13 21 21 H 1.09004 * 109.46883 * 299.15843 * 1 2 3 22 22 H 1.08999 * 109.46978 * 59.16015 * 1 2 3 23 23 H 1.09004 * 109.47183 * 179.15992 * 1 2 3 24 24 H 1.08998 * 109.88519 * 242.66831 * 3 2 1 25 25 H 1.09002 * 109.88628 * 3.85124 * 3 2 1 26 26 H 1.09002 * 110.70350 * 140.66969 * 4 3 2 27 27 H 1.09002 * 110.70408 * 263.72691 * 4 3 2 28 28 H 1.08996 * 110.99067 * 206.25517 * 5 4 3 29 29 H 1.09003 * 110.98966 * 82.43409 * 5 4 3 30 30 H 1.09004 * 109.46626 * 183.54819 * 8 6 2 31 31 H 1.08992 * 109.46925 * 63.55104 * 8 6 2 32 32 H 1.00899 * 110.99893 * 303.95779 * 9 8 6 33 33 H 1.09000 * 109.47093 * 59.99902 * 10 9 8 34 34 H 1.08998 * 109.47193 * 299.99951 * 10 9 8 35 35 H 1.09000 * 109.47250 * 59.99985 * 11 10 9 36 36 H 1.08999 * 109.47531 * 299.99773 * 11 10 9 37 37 H 1.08995 * 109.46729 * 60.00173 * 12 11 10 38 38 H 1.09007 * 109.46460 * 300.00028 * 12 11 10 39 39 H 0.96998 * 119.99640 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9159 1.5136 1.2325 5 6 3.3048 0.0444 1.5438 6 6 1.9989 -0.7077 1.1851 7 1 1.2881 -0.6519 2.0096 8 6 2.3019 -2.1677 0.8422 9 7 1.0888 -2.8098 0.3188 10 6 1.3424 -4.2161 -0.0213 11 6 0.0591 -4.8494 -0.5623 12 6 0.3231 -6.3145 -0.9161 13 6 -0.9409 -6.9380 -1.4495 14 1 -1.8423 -6.3483 -1.5288 15 6 -0.9463 -8.2611 -1.8374 16 7 -2.0495 -8.8055 -2.3025 17 14 0.6128 -9.2808 -1.7010 18 1 1.3875 -9.1719 -2.9632 19 1 1.4352 -8.7792 -0.5707 20 1 0.2554 -10.7020 -1.4606 21 1 -0.3633 0.5007 0.8975 22 1 -0.3633 0.5268 -0.8824 23 1 -0.3634 -1.0276 -0.0151 24 1 2.5697 1.5539 -0.9106 25 1 1.1756 2.0892 0.0688 26 1 3.8001 2.1033 0.9905 27 1 2.3752 1.9574 2.0685 28 1 3.5495 -0.0796 2.5986 29 1 4.1302 -0.2833 0.9118 30 1 2.6314 -2.6908 1.7400 31 1 3.0885 -2.2082 0.0888 32 1 0.3254 -2.7284 0.9736 33 1 1.6651 -4.7532 0.8706 34 1 2.1224 -4.2713 -0.7807 35 1 -0.2631 -4.3123 -1.4544 36 1 -0.7213 -4.7943 0.1966 37 1 0.6450 -6.8513 -0.0238 38 1 1.1036 -6.3699 -1.6750 39 1 -2.0533 -9.7364 -2.5750 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226043395.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:30 Heat of formation + Delta-G solvation = -8.744901 kcal Electronic energy + Delta-G solvation = -15632.336421 eV Core-core repulsion = 13188.106669 eV Total energy + Delta-G solvation = -2444.229752 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.32552 -36.16938 -33.50050 -32.14380 -31.67301 -29.59159 -26.62448 -25.63583 -23.64157 -21.96757 -21.16294 -20.42939 -19.70599 -16.68096 -16.47591 -15.75130 -15.25818 -14.52479 -14.18790 -14.08745 -13.70694 -13.57155 -13.12264 -12.77053 -12.57915 -12.27635 -11.76269 -11.68612 -11.36017 -11.29391 -11.20799 -11.08078 -10.84987 -10.80463 -10.70221 -9.89032 -9.66106 -9.50281 -9.11619 -8.48730 -8.29192 -8.05238 -5.99285 -3.96618 3.34525 3.41277 3.45428 3.89513 4.26474 4.46834 4.49834 4.72531 4.77051 5.02599 5.23951 5.30490 5.34816 5.38474 5.50307 5.54987 5.59096 5.64100 5.69337 5.71680 5.80992 5.88980 5.98951 6.08401 6.21387 6.26105 6.62577 6.65563 6.96924 6.99982 7.11113 7.33164 7.42845 7.51701 7.66828 7.86088 8.60569 9.06554 9.63631 11.14383 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.056747 B = 0.004268 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.301743 B = 6559.617463 C = 6898.290133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.512 5.512 3 C 0.038 3.962 4 C -0.142 4.142 5 C -0.124 4.124 6 C 0.073 3.927 7 H 0.050 0.950 8 C 0.075 3.925 9 N -0.679 5.679 10 C 0.058 3.942 11 C -0.098 4.098 12 C -0.013 4.013 13 C -0.517 4.517 14 H 0.071 0.929 15 C 0.064 3.936 16 N -0.906 5.906 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.266 1.266 20 H -0.289 1.289 21 H 0.014 0.986 22 H 0.062 0.938 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.026 0.974 31 H 0.075 0.925 32 H 0.331 0.669 33 H 0.020 0.980 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.012 0.988 38 H 0.011 0.989 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.336 19.434 8.727 23.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.236 5.236 3 C -0.090 4.090 4 C -0.180 4.180 5 C -0.163 4.163 6 C -0.035 4.035 7 H 0.068 0.932 8 C -0.055 4.055 9 N -0.309 5.309 10 C -0.071 4.071 11 C -0.136 4.136 12 C -0.051 4.051 13 C -0.555 4.555 14 H 0.090 0.910 15 C -0.137 4.137 16 N -0.545 5.545 17 Si 0.709 3.291 18 H -0.203 1.203 19 H -0.191 1.191 20 H -0.215 1.215 21 H 0.033 0.967 22 H 0.081 0.919 23 H 0.108 0.892 24 H 0.093 0.907 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.044 0.956 31 H 0.094 0.906 32 H 0.149 0.851 33 H 0.038 0.962 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.031 0.969 38 H 0.029 0.971 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.508 19.228 7.550 23.176 hybrid contribution 0.457 -0.618 1.611 1.785 sum 10.966 18.609 9.161 23.462 Atomic orbital electron populations 1.22612 0.87103 1.03632 0.99242 1.63350 1.08375 1.12321 1.39577 1.22881 0.97753 0.90207 0.98138 1.22769 0.99956 0.97077 0.98242 1.22716 0.97614 0.94547 1.01406 1.22637 0.95370 0.94367 0.91156 0.93183 1.21914 0.93855 0.91974 0.97762 1.60527 1.06677 1.16162 1.47549 1.22138 0.99937 0.86301 0.98732 1.21428 0.94623 0.97233 1.00353 1.19546 0.97502 0.92056 0.96010 1.21168 0.96518 0.96116 1.41742 0.91048 1.25049 0.96040 0.97850 0.94711 1.69924 1.27058 1.13442 1.44082 0.86760 0.84095 0.79294 0.79000 1.20288 1.19112 1.21478 0.96725 0.91935 0.89246 0.90699 0.93074 0.90880 0.91778 0.91022 0.90369 0.95600 0.90616 0.85126 0.96150 0.91522 0.91931 0.93232 0.96932 0.97056 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.96 60.06 0.54 0.80 16 2 N -0.51 -6.02 4.98 -231.59 -1.15 -7.17 16 3 C 0.04 0.37 6.90 -2.84 -0.02 0.35 16 4 C -0.14 -1.13 6.94 -24.91 -0.17 -1.31 16 5 C -0.12 -1.09 6.50 -24.59 -0.16 -1.25 16 6 C 0.07 0.79 2.75 -66.18 -0.18 0.61 16 7 H 0.05 0.54 7.77 -51.93 -0.40 0.13 16 8 C 0.08 0.92 5.45 -3.82 -0.02 0.90 16 9 N -0.68 -9.80 4.91 -113.78 -0.56 -10.36 16 10 C 0.06 0.97 5.68 -3.83 -0.02 0.95 16 11 C -0.10 -2.01 5.41 -26.73 -0.14 -2.16 16 12 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 13 C -0.52 -15.18 9.66 -34.44 -0.33 -15.52 16 14 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 15 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 16 N -0.91 -28.54 13.96 55.43 0.77 -27.77 16 17 Si 0.88 22.23 27.47 -169.99 -4.67 17.56 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H 0.01 0.15 8.09 -51.93 -0.42 -0.27 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.09 1.13 6.10 -51.93 -0.32 0.82 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.46 7.58 -51.93 -0.39 0.06 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.70 8.00 -51.93 -0.42 0.28 16 30 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 1.00 8.06 -51.93 -0.42 0.58 16 32 H 0.33 4.51 8.09 -39.29 -0.32 4.19 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 38 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 39 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 306.02 15.07 4.61 4.61 Total: -1.00 -31.10 306.02 -8.99 -40.09 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -7.27 Total: -1.72 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -0.73 Total: -15.24 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: -0.94 Total: -45.31 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.67 Total: 17.56 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.10 -8.99 -40.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226043395.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.341 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds