Wall clock time and date at job start Mon Mar 30 2020 03:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47443 * 111.00236 * 2 1 4 4 C 1.54315 * 107.23364 * 123.25732 * 3 2 1 5 5 C 1.55139 * 103.02067 * 22.28615 * 4 3 2 6 6 C 1.47850 * 111.00178 * 120.84459 * 2 1 3 7 7 H 1.09006 * 110.36855 * 332.57539 * 6 2 1 8 8 C 1.53004 * 110.37334 * 94.80428 * 6 2 1 9 9 N 1.46901 * 109.47096 * 303.54561 * 8 6 2 10 10 C 1.46897 * 110.99749 * 180.02562 * 9 8 6 11 11 C 1.52995 * 109.47075 * 180.02562 * 10 9 8 12 12 C 1.53007 * 109.47329 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.46894 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00599 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99675 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00210 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00019 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.46845 * 269.99914 * 17 15 13 19 19 H 1.48503 * 109.47399 * 29.99403 * 17 15 13 20 20 H 1.48498 * 109.47295 * 150.00010 * 17 15 13 21 21 H 1.09004 * 109.46883 * 299.15843 * 1 2 3 22 22 H 1.08999 * 109.46978 * 59.16015 * 1 2 3 23 23 H 1.09004 * 109.47183 * 179.15992 * 1 2 3 24 24 H 1.08998 * 109.88519 * 242.66831 * 3 2 1 25 25 H 1.09002 * 109.88628 * 3.85124 * 3 2 1 26 26 H 1.09002 * 110.70350 * 140.66969 * 4 3 2 27 27 H 1.09002 * 110.70408 * 263.72691 * 4 3 2 28 28 H 1.08996 * 110.99067 * 206.25517 * 5 4 3 29 29 H 1.09003 * 110.98966 * 82.43409 * 5 4 3 30 30 H 1.09004 * 109.46626 * 183.54819 * 8 6 2 31 31 H 1.08992 * 109.46925 * 63.55104 * 8 6 2 32 32 H 1.00899 * 110.99893 * 303.95779 * 9 8 6 33 33 H 1.09000 * 109.47093 * 59.99902 * 10 9 8 34 34 H 1.08998 * 109.47193 * 299.99951 * 10 9 8 35 35 H 1.09000 * 109.47250 * 59.99985 * 11 10 9 36 36 H 1.08999 * 109.47531 * 299.99773 * 11 10 9 37 37 H 1.08995 * 109.46729 * 60.00173 * 12 11 10 38 38 H 1.09007 * 109.46460 * 300.00028 * 12 11 10 39 39 H 0.96998 * 119.99640 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9159 1.5136 1.2325 5 6 3.3048 0.0444 1.5438 6 6 1.9989 -0.7077 1.1851 7 1 1.2881 -0.6519 2.0096 8 6 2.3019 -2.1677 0.8422 9 7 1.0888 -2.8098 0.3188 10 6 1.3424 -4.2161 -0.0213 11 6 0.0591 -4.8494 -0.5623 12 6 0.3231 -6.3145 -0.9161 13 6 -0.9409 -6.9380 -1.4495 14 1 -1.8423 -6.3483 -1.5288 15 6 -0.9463 -8.2611 -1.8374 16 7 -2.0495 -8.8055 -2.3025 17 14 0.6128 -9.2808 -1.7010 18 1 1.3875 -9.1719 -2.9632 19 1 1.4352 -8.7792 -0.5707 20 1 0.2554 -10.7020 -1.4606 21 1 -0.3633 0.5007 0.8975 22 1 -0.3633 0.5268 -0.8824 23 1 -0.3634 -1.0276 -0.0151 24 1 2.5697 1.5539 -0.9106 25 1 1.1756 2.0892 0.0688 26 1 3.8001 2.1033 0.9905 27 1 2.3752 1.9574 2.0685 28 1 3.5495 -0.0796 2.5986 29 1 4.1302 -0.2833 0.9118 30 1 2.6314 -2.6908 1.7400 31 1 3.0885 -2.2082 0.0888 32 1 0.3254 -2.7284 0.9736 33 1 1.6651 -4.7532 0.8706 34 1 2.1224 -4.2713 -0.7807 35 1 -0.2631 -4.3123 -1.4544 36 1 -0.7213 -4.7943 0.1966 37 1 0.6450 -6.8513 -0.0238 38 1 1.1036 -6.3699 -1.6750 39 1 -2.0533 -9.7364 -2.5750 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226043395.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:30 Heat of formation + Delta-G solvation = -30.182873 kcal Electronic energy + Delta-G solvation = -15633.266042 eV Core-core repulsion = 13188.106669 eV Total energy + Delta-G solvation = -2445.159372 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.13905 -37.49632 -35.37324 -33.51499 -32.90310 -30.81231 -28.19310 -26.54300 -24.92999 -23.39964 -22.08873 -21.78631 -20.84298 -18.88768 -17.29592 -16.82830 -16.40316 -16.24818 -15.52973 -15.22579 -14.79485 -14.72364 -14.62489 -14.01228 -13.83744 -13.46018 -13.39050 -12.95190 -12.59733 -12.47981 -12.18426 -12.15739 -12.08724 -11.94080 -11.76859 -11.51962 -11.45640 -11.38242 -11.17761 -10.75764 -9.25009 -9.07231 -8.28884 -6.33140 1.36576 1.38397 1.50740 2.37182 3.06286 3.06798 3.27154 3.76906 3.88242 4.09359 4.17898 4.27144 4.35906 4.43301 4.57120 4.58337 4.67766 4.68719 4.73581 4.83417 4.91503 4.94116 5.00095 5.00526 5.07862 5.13879 5.17195 5.30622 5.37276 5.52892 5.63068 5.67376 6.08937 6.24296 6.28620 6.32224 6.54674 6.75164 7.31416 8.88238 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.056747 B = 0.004268 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.301743 B = 6559.617463 C = 6898.290133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.534 5.534 3 C 0.035 3.965 4 C -0.135 4.135 5 C -0.120 4.120 6 C 0.073 3.927 7 H 0.052 0.948 8 C 0.077 3.923 9 N -0.684 5.684 10 C 0.072 3.928 11 C -0.089 4.089 12 C -0.010 4.010 13 C -0.534 4.534 14 H 0.029 0.971 15 C 0.000 4.000 16 N -0.953 5.953 17 Si 0.955 3.045 18 H -0.266 1.266 19 H -0.246 1.246 20 H -0.283 1.283 21 H 0.024 0.976 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.067 0.933 32 H 0.337 0.663 33 H 0.029 0.971 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.020 0.980 38 H 0.017 0.983 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.772 20.136 9.995 25.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.259 5.259 3 C -0.093 4.093 4 C -0.173 4.173 5 C -0.159 4.159 6 C -0.035 4.035 7 H 0.070 0.930 8 C -0.052 4.052 9 N -0.315 5.315 10 C -0.057 4.057 11 C -0.127 4.127 12 C -0.048 4.048 13 C -0.572 4.572 14 H 0.047 0.953 15 C -0.196 4.196 16 N -0.594 5.594 17 Si 0.778 3.222 18 H -0.191 1.191 19 H -0.169 1.169 20 H -0.209 1.209 21 H 0.043 0.957 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.074 0.926 26 H 0.105 0.895 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.154 0.846 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.038 0.962 38 H 0.036 0.964 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.949 19.962 8.830 25.380 hybrid contribution -0.411 -0.775 1.182 1.472 sum 12.538 19.187 10.013 25.012 Atomic orbital electron populations 1.22523 0.87361 1.02649 0.99699 1.63304 1.08373 1.13817 1.40381 1.22916 0.98220 0.89188 0.98939 1.22747 1.00174 0.96839 0.97584 1.22714 0.96298 0.94560 1.02309 1.22636 0.96560 0.93468 0.90859 0.92991 1.21947 0.92505 0.92984 0.97797 1.60458 1.07955 1.14612 1.48488 1.21855 0.97403 0.87622 0.98853 1.21245 0.96635 0.95025 0.99778 1.19492 0.95089 0.94192 0.96030 1.21529 0.97157 0.96375 1.42127 0.95292 1.26087 1.00049 0.99321 0.94126 1.70082 1.29832 1.14145 1.45378 0.85585 0.79313 0.77256 0.80028 1.19136 1.16907 1.20860 0.95717 0.92056 0.90885 0.91036 0.92588 0.89460 0.91023 0.89464 0.90587 0.94435 0.91466 0.84556 0.95263 0.91659 0.93515 0.93563 0.96164 0.96417 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 8.96 127.69 1.14 1.72 16 2 N -0.53 -11.85 4.98 -886.62 -4.42 -16.27 16 3 C 0.04 0.61 6.90 86.65 0.60 1.21 16 4 C -0.14 -1.80 6.94 31.77 0.22 -1.58 16 5 C -0.12 -1.78 6.50 31.98 0.21 -1.57 16 6 C 0.07 1.44 2.75 45.39 0.12 1.56 16 7 H 0.05 1.01 7.77 -2.38 -0.02 0.99 16 8 C 0.08 1.76 5.45 86.30 0.47 2.23 16 9 N -0.68 -18.90 4.91 -513.90 -2.53 -21.43 16 10 C 0.07 2.31 5.68 86.30 0.49 2.80 16 11 C -0.09 -3.61 5.41 30.60 0.17 -3.44 16 12 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 13 C -0.53 -31.99 9.66 25.60 0.25 -31.74 16 14 H 0.03 1.91 7.99 -2.91 -0.02 1.88 16 15 C 0.00 0.03 5.47 84.65 0.46 0.49 16 16 N -0.95 -61.39 13.96 21.45 0.30 -61.09 16 17 Si 0.96 45.25 27.47 68.60 1.88 47.14 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 19 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 20 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 21 H 0.02 0.48 8.09 -2.38 -0.02 0.46 16 22 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.07 1.84 6.10 -2.38 -0.01 1.82 16 24 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.06 0.91 7.58 -2.39 -0.02 0.89 16 26 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 1.17 8.00 -2.39 -0.02 1.15 16 30 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.07 1.65 8.06 -2.39 -0.02 1.63 16 32 H 0.34 8.78 8.09 -89.69 -0.73 8.06 16 33 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 37 H 0.02 0.94 7.20 -2.39 -0.02 0.93 16 38 H 0.02 0.83 7.57 -2.38 -0.02 0.81 16 39 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -67.20 306.02 -0.30 -67.50 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.21 Total: 12.84 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: 4.25 Total: -28.68 kcal Atomic # 7 Polarization: -92.14 SS G_CDS: -6.64 Total: -98.78 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.88 Total: 47.14 kcal Total: -67.20 -0.30 -67.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226043395.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.313 kcal (2) G-P(sol) polarization free energy of solvation -67.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds