Wall clock time and date at job start Mon Mar 30 2020 03:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 111.00137 * 2 1 4 4 C 1.52999 * 109.46897 * 293.95628 * 3 2 1 5 5 C 1.50706 * 109.46573 * 179.97438 * 4 3 2 6 6 H 1.07995 * 120.00167 * 359.72054 * 5 4 3 7 7 C 1.37879 * 119.99394 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47405 * 60.00219 * 9 7 5 11 11 H 1.48503 * 109.46845 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47399 * 299.99813 * 9 7 5 13 13 C 1.46898 * 110.99953 * 123.95313 * 2 1 3 14 14 H 1.08999 * 109.03042 * 187.08584 * 13 2 1 15 15 C 1.54526 * 109.04007 * 68.20827 * 13 2 1 16 16 C 1.50536 * 108.86896 * 162.20811 * 15 13 2 17 17 C 1.53923 * 112.93967 * 91.75011 * 16 15 13 18 18 N 1.47943 * 113.33109 * 317.75125 * 17 16 15 19 19 C 1.44299 * 113.64296 * 318.14109 * 18 17 16 20 20 C 1.45875 * 109.04223 * 306.04749 * 13 2 1 21 21 H 1.09000 * 109.46850 * 59.99662 * 1 2 3 22 22 H 1.09000 * 109.47134 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46988 * 300.00022 * 1 2 3 24 24 H 1.09000 * 109.47033 * 173.95375 * 3 2 1 25 25 H 1.09001 * 109.46544 * 53.95430 * 3 2 1 26 26 H 1.09000 * 109.47486 * 60.00024 * 4 3 2 27 27 H 1.09001 * 109.47362 * 299.99301 * 4 3 2 28 28 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.57021 * 282.02230 * 15 13 2 30 30 H 1.09001 * 109.57181 * 42.39142 * 15 13 2 31 31 H 1.08997 * 108.78633 * 330.85793 * 16 15 13 32 32 H 1.09006 * 108.69885 * 212.58034 * 16 15 13 33 33 H 1.09000 * 108.71140 * 196.75588 * 17 16 15 34 34 H 1.09002 * 108.60863 * 78.67684 * 17 16 15 35 35 H 1.00897 * 111.00162 * 192.18898 * 18 17 16 36 36 H 1.08999 * 109.69804 * 335.69530 * 19 18 17 37 37 H 1.08994 * 109.72860 * 215.12148 * 19 18 17 38 38 H 1.08992 * 108.84104 * 302.87327 * 20 13 2 39 39 H 1.08995 * 108.84319 * 61.34474 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6314 2.0574 -1.3182 5 6 2.1711 3.4646 -1.3179 6 1 2.7149 3.8342 -0.4612 7 6 1.9658 4.2818 -2.4093 8 7 1.2988 3.8335 -3.4503 9 14 2.6353 6.0257 -2.4092 10 1 4.1123 5.9889 -2.2613 11 1 2.2819 6.6916 -3.6886 12 1 2.0432 6.7832 -1.2774 13 6 1.9954 -0.7660 1.1376 14 1 3.0774 -0.6412 1.1798 15 6 1.6698 -2.2624 0.9316 16 6 2.5574 -3.0819 1.8299 17 6 1.9189 -3.3741 3.1996 18 7 1.2235 -2.2059 3.7831 19 6 1.9437 -0.9655 3.6252 20 6 1.4084 -0.2517 2.3700 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 3.0798 1.3444 0.1082 25 1 1.5611 1.9273 0.8310 26 1 0.5472 2.0845 -1.4265 27 1 2.0658 1.5016 -2.1492 28 1 1.1542 4.4086 -4.2179 29 1 0.6255 -2.4468 1.1834 30 1 1.8504 -2.5357 -0.1080 31 1 3.4920 -2.5433 1.9860 32 1 2.7765 -4.0284 1.3355 33 1 2.7002 -3.6958 3.8881 34 1 1.2009 -4.1859 3.0826 35 1 0.9927 -2.3691 4.7517 36 1 3.0074 -1.1709 3.5054 37 1 1.7876 -0.3353 4.5007 38 1 1.6307 0.8124 2.4485 39 1 0.3273 -0.3829 2.3265 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226466774.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:01 Heat of formation + Delta-G solvation = -2.018156 kcal Electronic energy + Delta-G solvation = -16359.328636 eV Core-core repulsion = 13915.390577 eV Total energy + Delta-G solvation = -2443.938058 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.50839 -36.45891 -33.28899 -32.44922 -31.38550 -29.05363 -26.17726 -25.60620 -24.69645 -22.84955 -20.49165 -19.73281 -19.09281 -16.89709 -16.42259 -15.46224 -14.75952 -14.58353 -14.33206 -14.17187 -13.71920 -13.34607 -13.19307 -12.68780 -12.19811 -11.94759 -11.50985 -11.26325 -11.18173 -11.16977 -10.90807 -10.84084 -10.76664 -10.44307 -10.35846 -10.11950 -9.71208 -9.25040 -9.06932 -8.42010 -8.27704 -7.52473 -5.94767 -3.96958 3.36084 3.40316 3.42694 4.09785 4.44908 4.64444 4.75819 4.96472 5.10231 5.14586 5.26018 5.40851 5.42870 5.60076 5.66307 5.79594 5.83102 5.97655 5.99914 6.07805 6.11909 6.20927 6.38399 6.42239 6.47686 6.54915 6.66916 6.72975 7.06465 7.07913 7.33018 7.63185 7.70366 7.89016 7.98931 8.15952 8.49793 9.10386 9.66213 11.16645 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.053831 B = 0.005250 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.019505 B = 5331.841278 C = 5530.349937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.538 5.538 3 C 0.062 3.938 4 C 0.028 3.972 5 C -0.521 4.521 6 H 0.052 0.948 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 C 0.088 3.912 14 H 0.066 0.934 15 C -0.100 4.100 16 C -0.119 4.119 17 C 0.067 3.933 18 N -0.699 5.699 19 C 0.072 3.928 20 C -0.149 4.149 21 H 0.073 0.927 22 H 0.056 0.944 23 H 0.021 0.979 24 H 0.056 0.944 25 H 0.019 0.981 26 H 0.017 0.983 27 H 0.023 0.977 28 H 0.260 0.740 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.024 0.976 34 H 0.068 0.932 35 H 0.340 0.660 36 H 0.039 0.961 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.542 -12.947 13.229 18.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.261 5.261 3 C -0.065 4.065 4 C -0.009 4.009 5 C -0.560 4.560 6 H 0.070 0.930 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.021 4.021 14 H 0.084 0.916 15 C -0.138 4.138 16 C -0.158 4.158 17 C -0.062 4.062 18 N -0.331 5.331 19 C -0.059 4.059 20 C -0.189 4.189 21 H 0.092 0.908 22 H 0.075 0.925 23 H 0.039 0.961 24 H 0.075 0.925 25 H 0.038 0.962 26 H 0.035 0.965 27 H 0.042 0.958 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.086 0.914 35 H 0.158 0.842 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.302 -13.011 12.035 17.726 hybrid contribution 0.783 1.340 1.377 2.074 sum 1.084 -11.671 13.411 17.812 Atomic orbital electron populations 1.22380 0.88443 1.00606 1.00924 1.62407 1.07542 1.15694 1.40437 1.22340 0.98257 0.85679 1.00186 1.19087 0.96879 0.93905 0.91057 1.21175 1.35255 0.97866 1.01736 0.92961 1.24985 0.95319 0.98370 0.95596 1.69965 1.40826 1.36459 1.06041 0.86674 0.79430 0.84806 0.77158 1.20270 1.21281 1.20343 1.20642 0.98837 0.93628 0.88996 0.91584 1.21289 0.99939 0.93548 0.99029 1.21366 0.99135 1.00530 0.94735 1.22217 0.96214 0.92492 0.95261 1.59017 1.49233 1.02509 1.22330 1.21514 0.95848 0.90462 0.98032 1.21275 1.02696 0.99603 0.95305 0.90848 0.92515 0.96059 0.92523 0.96239 0.96487 0.95823 0.92992 0.91370 0.91237 0.92426 0.91568 0.95771 0.91368 0.84163 0.94223 0.92092 0.92070 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 8.40 60.06 0.50 0.94 16 2 N -0.54 -10.17 4.69 -238.02 -1.12 -11.29 16 3 C 0.06 1.36 4.41 -3.82 -0.02 1.35 16 4 C 0.03 0.75 4.90 -27.88 -0.14 0.62 16 5 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 6 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 9 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 13 C 0.09 1.35 1.78 -70.28 -0.13 1.23 16 14 H 0.07 1.06 7.33 -51.93 -0.38 0.68 16 15 C -0.10 -1.34 4.40 -27.16 -0.12 -1.46 16 16 C -0.12 -1.30 5.27 -27.48 -0.14 -1.44 16 17 C 0.07 0.65 6.44 -2.77 -0.02 0.63 16 18 N -0.70 -7.30 6.17 -113.78 -0.70 -8.00 16 19 C 0.07 0.83 6.15 -4.70 -0.03 0.80 16 20 C -0.15 -2.13 4.01 -29.59 -0.12 -2.25 16 21 H 0.07 1.45 6.47 -51.93 -0.34 1.11 16 22 H 0.06 0.89 6.78 -51.93 -0.35 0.54 16 23 H 0.02 0.37 6.48 -51.93 -0.34 0.03 16 24 H 0.06 1.24 7.90 -51.93 -0.41 0.82 16 25 H 0.02 0.43 6.92 -51.93 -0.36 0.07 16 26 H 0.02 0.48 6.55 -51.93 -0.34 0.14 16 27 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.07 0.94 7.06 -51.93 -0.37 0.57 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.65 6.66 -51.93 -0.35 0.30 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.34 2.87 8.89 -39.29 -0.35 2.52 16 36 H 0.04 0.46 6.79 -51.93 -0.35 0.10 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.96 6.54 -51.93 -0.34 0.62 16 39 H 0.08 1.15 6.21 -51.93 -0.32 0.82 16 LS Contribution 290.82 15.07 4.38 4.38 Total: -1.00 -30.35 290.82 -9.00 -39.35 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -6.67 Total: -1.40 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -0.62 Total: -13.38 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: -1.08 Total: -45.90 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.35 -9.00 -39.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226466774.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.333 kcal (2) G-P(sol) polarization free energy of solvation -30.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds