Wall clock time and date at job start Mon Mar 30 2020 03:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 111.00137 * 2 1 4 4 C 1.52999 * 109.46897 * 293.95628 * 3 2 1 5 5 C 1.50706 * 109.46573 * 179.97438 * 4 3 2 6 6 H 1.07995 * 120.00167 * 359.72054 * 5 4 3 7 7 C 1.37879 * 119.99394 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47405 * 60.00219 * 9 7 5 11 11 H 1.48503 * 109.46845 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47399 * 299.99813 * 9 7 5 13 13 C 1.46898 * 110.99953 * 123.95313 * 2 1 3 14 14 H 1.08999 * 109.03042 * 187.08584 * 13 2 1 15 15 C 1.54526 * 109.04007 * 68.20827 * 13 2 1 16 16 C 1.50536 * 108.86896 * 162.20811 * 15 13 2 17 17 C 1.53923 * 112.93967 * 91.75011 * 16 15 13 18 18 N 1.47943 * 113.33109 * 317.75125 * 17 16 15 19 19 C 1.44299 * 113.64296 * 318.14109 * 18 17 16 20 20 C 1.45875 * 109.04223 * 306.04749 * 13 2 1 21 21 H 1.09000 * 109.46850 * 59.99662 * 1 2 3 22 22 H 1.09000 * 109.47134 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46988 * 300.00022 * 1 2 3 24 24 H 1.09000 * 109.47033 * 173.95375 * 3 2 1 25 25 H 1.09001 * 109.46544 * 53.95430 * 3 2 1 26 26 H 1.09000 * 109.47486 * 60.00024 * 4 3 2 27 27 H 1.09001 * 109.47362 * 299.99301 * 4 3 2 28 28 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.57021 * 282.02230 * 15 13 2 30 30 H 1.09001 * 109.57181 * 42.39142 * 15 13 2 31 31 H 1.08997 * 108.78633 * 330.85793 * 16 15 13 32 32 H 1.09006 * 108.69885 * 212.58034 * 16 15 13 33 33 H 1.09000 * 108.71140 * 196.75588 * 17 16 15 34 34 H 1.09002 * 108.60863 * 78.67684 * 17 16 15 35 35 H 1.00897 * 111.00162 * 192.18898 * 18 17 16 36 36 H 1.08999 * 109.69804 * 335.69530 * 19 18 17 37 37 H 1.08994 * 109.72860 * 215.12148 * 19 18 17 38 38 H 1.08992 * 108.84104 * 302.87327 * 20 13 2 39 39 H 1.08995 * 108.84319 * 61.34474 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6314 2.0574 -1.3182 5 6 2.1711 3.4646 -1.3179 6 1 2.7149 3.8342 -0.4612 7 6 1.9658 4.2818 -2.4093 8 7 1.2988 3.8335 -3.4503 9 14 2.6353 6.0257 -2.4092 10 1 4.1123 5.9889 -2.2613 11 1 2.2819 6.6916 -3.6886 12 1 2.0432 6.7832 -1.2774 13 6 1.9954 -0.7660 1.1376 14 1 3.0774 -0.6412 1.1798 15 6 1.6698 -2.2624 0.9316 16 6 2.5574 -3.0819 1.8299 17 6 1.9189 -3.3741 3.1996 18 7 1.2235 -2.2059 3.7831 19 6 1.9437 -0.9655 3.6252 20 6 1.4084 -0.2517 2.3700 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 3.0798 1.3444 0.1082 25 1 1.5611 1.9273 0.8310 26 1 0.5472 2.0845 -1.4265 27 1 2.0658 1.5016 -2.1492 28 1 1.1542 4.4086 -4.2179 29 1 0.6255 -2.4468 1.1834 30 1 1.8504 -2.5357 -0.1080 31 1 3.4920 -2.5433 1.9860 32 1 2.7765 -4.0284 1.3355 33 1 2.7002 -3.6958 3.8881 34 1 1.2009 -4.1859 3.0826 35 1 0.9927 -2.3691 4.7517 36 1 3.0074 -1.1709 3.5054 37 1 1.7876 -0.3353 4.5007 38 1 1.6307 0.8124 2.4485 39 1 0.3273 -0.3829 2.3265 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226466774.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:01 Heat of formation + Delta-G solvation = -23.522515 kcal Electronic energy + Delta-G solvation = -16360.261135 eV Core-core repulsion = 13915.390577 eV Total energy + Delta-G solvation = -2444.870557 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.71539 -37.70435 -35.28824 -33.56652 -32.79721 -30.83422 -27.77671 -26.77052 -26.10815 -24.38198 -22.13039 -20.70949 -20.46827 -18.63984 -17.72353 -16.82604 -16.54014 -16.03789 -15.52009 -15.47786 -15.06146 -14.74645 -14.26054 -14.16805 -13.90561 -13.37979 -13.22462 -12.79643 -12.75174 -12.55054 -12.43193 -12.12327 -12.03562 -11.89240 -11.63955 -11.47641 -11.34884 -11.30909 -11.01241 -10.52718 -9.25991 -9.01346 -8.19321 -6.31085 1.39744 1.43396 1.51341 2.40662 3.13147 3.13855 3.34399 3.74572 3.98367 4.11532 4.24211 4.28161 4.38778 4.43333 4.53157 4.60510 4.67399 4.74439 4.77583 4.80201 4.89811 5.00158 5.06970 5.14201 5.15019 5.23897 5.31630 5.43284 5.48200 5.52167 5.68334 5.80604 6.12673 6.25370 6.37268 6.40104 6.63209 6.85891 7.37886 8.92769 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.053831 B = 0.005250 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.019505 B = 5331.841278 C = 5530.349937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.552 5.552 3 C 0.081 3.919 4 C 0.036 3.964 5 C -0.546 4.546 6 H 0.059 0.941 7 C 0.002 3.998 8 N -0.932 5.932 9 Si 0.967 3.033 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.267 1.267 13 C 0.089 3.911 14 H 0.060 0.940 15 C -0.091 4.091 16 C -0.118 4.118 17 C 0.068 3.932 18 N -0.707 5.707 19 C 0.080 3.920 20 C -0.144 4.144 21 H 0.045 0.955 22 H 0.079 0.921 23 H 0.026 0.974 24 H 0.056 0.944 25 H 0.020 0.980 26 H -0.006 1.006 27 H -0.010 1.010 28 H 0.264 0.736 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.355 0.645 36 H 0.041 0.959 37 H 0.075 0.925 38 H 0.043 0.957 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.182 -13.351 14.990 20.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.275 5.275 3 C -0.046 4.046 4 C -0.001 4.001 5 C -0.585 4.585 6 H 0.077 0.923 7 C -0.196 4.196 8 N -0.572 5.572 9 Si 0.791 3.209 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.192 1.192 13 C -0.019 4.019 14 H 0.079 0.921 15 C -0.129 4.129 16 C -0.156 4.156 17 C -0.060 4.060 18 N -0.341 5.341 19 C -0.051 4.051 20 C -0.184 4.184 21 H 0.064 0.936 22 H 0.098 0.902 23 H 0.044 0.956 24 H 0.074 0.926 25 H 0.038 0.962 26 H 0.012 0.988 27 H 0.008 0.992 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.174 0.826 36 H 0.060 0.940 37 H 0.093 0.907 38 H 0.061 0.939 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.941 -13.440 13.826 19.305 hybrid contribution 0.552 1.399 0.804 1.706 sum 1.494 -12.041 14.630 19.007 Atomic orbital electron populations 1.22296 0.87856 1.01694 0.99744 1.62330 1.08188 1.13999 1.42967 1.21943 0.98197 0.87241 0.97241 1.18918 0.94972 0.93680 0.92522 1.21598 1.35637 0.98964 1.02265 0.92310 1.25971 0.95352 1.03306 0.94977 1.70109 1.41926 1.38365 1.06789 0.85478 0.79095 0.78741 0.77578 1.19113 1.20694 1.19155 1.20750 0.98367 0.94500 0.88267 0.92142 1.21201 1.00464 0.92141 0.99117 1.21350 0.98338 1.00704 0.95205 1.22225 0.96878 0.92318 0.94605 1.58921 1.49253 1.02331 1.23568 1.21373 0.95766 0.91038 0.96874 1.21197 1.02078 0.98880 0.96236 0.93624 0.90214 0.95559 0.92550 0.96199 0.98793 0.99180 0.92738 0.91527 0.92400 0.92793 0.89938 0.94157 0.90432 0.82551 0.94047 0.90692 0.93851 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.16 8.40 127.69 1.07 2.24 16 2 N -0.55 -21.19 4.69 -906.95 -4.25 -25.44 16 3 C 0.08 3.65 4.41 86.30 0.38 4.03 16 4 C 0.04 2.04 4.90 29.85 0.15 2.19 16 5 C -0.55 -32.20 9.11 25.60 0.23 -31.96 16 6 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 7 C 0.00 0.11 5.46 84.66 0.46 0.57 16 8 N -0.93 -58.26 13.29 21.45 0.28 -57.98 16 9 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 C 0.09 2.70 1.78 43.25 0.08 2.77 16 14 H 0.06 1.90 7.33 -2.39 -0.02 1.88 16 15 C -0.09 -2.31 4.40 30.32 0.13 -2.18 16 16 C -0.12 -2.28 5.27 30.11 0.16 -2.12 16 17 C 0.07 1.10 6.44 86.41 0.56 1.66 16 18 N -0.71 -12.76 6.17 -513.90 -3.17 -15.93 16 19 C 0.08 1.66 6.15 87.12 0.54 2.20 16 20 C -0.14 -3.97 4.01 28.74 0.12 -3.85 16 21 H 0.04 1.88 6.47 -2.39 -0.02 1.87 16 22 H 0.08 2.48 6.78 -2.39 -0.02 2.46 16 23 H 0.03 0.91 6.48 -2.39 -0.02 0.90 16 24 H 0.06 2.50 7.90 -2.39 -0.02 2.48 16 25 H 0.02 0.88 6.92 -2.39 -0.02 0.87 16 26 H -0.01 -0.37 6.55 -2.39 -0.02 -0.39 16 27 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 28 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 29 H 0.07 1.72 7.06 -2.39 -0.02 1.70 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.05 1.10 6.66 -2.39 -0.02 1.08 16 32 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.35 4.85 8.89 -89.70 -0.80 4.05 16 36 H 0.04 0.85 6.79 -2.39 -0.02 0.84 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.04 1.33 6.54 -2.39 -0.02 1.32 16 39 H 0.07 1.96 6.21 -2.39 -0.01 1.95 16 Total: -1.00 -65.90 290.82 -1.02 -66.93 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 0.22 Total: 9.77 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: 3.87 Total: -24.46 kcal Atomic # 7 Polarization: -92.21 SS G_CDS: -7.14 Total: -99.35 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -65.90 -1.02 -66.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226466774.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.405 kcal (2) G-P(sol) polarization free energy of solvation -65.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds