Wall clock time and date at job start Mon Mar 30 2020 03:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99491 * 2 1 4 4 C 1.52999 * 109.47006 * 66.04728 * 3 2 1 5 5 C 1.50701 * 109.46914 * 179.97438 * 4 3 2 6 6 H 1.07995 * 120.00052 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99599 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99717 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00257 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47294 * 89.99768 * 9 7 5 11 11 H 1.48502 * 109.46886 * 209.99461 * 9 7 5 12 12 H 1.48495 * 109.47277 * 329.99565 * 9 7 5 13 13 C 1.46898 * 111.00104 * 236.04916 * 2 1 3 14 14 H 1.09002 * 108.91927 * 178.95313 * 13 2 1 15 15 C 1.45878 * 108.93781 * 297.65932 * 13 2 1 16 16 C 1.54314 * 112.18607 * 181.72704 * 15 13 2 17 17 C 1.50445 * 108.49922 * 281.46221 * 16 15 13 18 18 N 1.48000 * 112.82242 * 93.72667 * 17 16 15 19 19 C 1.48002 * 114.63454 * 318.09250 * 18 17 16 20 20 C 1.50446 * 112.82527 * 318.09036 * 19 18 17 21 21 H 1.09002 * 109.46864 * 183.94768 * 1 2 3 22 22 H 1.09000 * 109.47480 * 303.94899 * 1 2 3 23 23 H 1.08999 * 109.47171 * 63.95758 * 1 2 3 24 24 H 1.09003 * 109.46692 * 186.04608 * 3 2 1 25 25 H 1.08996 * 109.47463 * 306.04953 * 3 2 1 26 26 H 1.09003 * 109.47096 * 300.00024 * 4 3 2 27 27 H 1.09003 * 109.47198 * 59.99820 * 4 3 2 28 28 H 0.97003 * 119.99975 * 180.02562 * 8 7 5 29 29 H 1.09002 * 108.94139 * 302.42613 * 15 13 2 30 30 H 1.09000 * 108.94040 * 61.03334 * 15 13 2 31 31 H 1.09000 * 109.62901 * 41.16761 * 16 15 13 32 32 H 1.09003 * 109.63058 * 161.75781 * 16 15 13 33 33 H 1.09002 * 108.81153 * 214.58742 * 17 16 15 34 34 H 1.08999 * 108.81103 * 332.86858 * 17 16 15 35 35 H 1.00906 * 111.00057 * 84.83507 * 18 17 16 36 36 H 1.09003 * 108.80925 * 78.95073 * 19 18 17 37 37 H 1.09002 * 108.81114 * 197.33548 * 19 18 17 38 38 H 1.08997 * 109.63168 * 334.02727 * 20 19 18 39 39 H 1.09001 * 109.62830 * 213.43170 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6313 2.0574 1.3183 5 6 2.1718 3.4642 1.3185 6 1 2.7197 3.8323 0.4638 7 6 1.9658 4.2816 2.4096 8 7 2.4371 5.5095 2.4096 9 14 1.0174 3.6451 3.8878 10 1 1.9605 3.0180 4.8483 11 1 0.3154 4.7743 4.5490 12 1 0.0227 2.6372 3.4411 13 6 1.9955 -0.7659 -1.1376 14 1 3.0846 -0.7282 -1.1153 15 6 1.5672 -2.1547 -1.0121 16 6 2.1167 -3.0392 -2.1510 17 6 1.2823 -2.8066 -3.3811 18 7 1.8501 -1.7705 -4.2724 19 6 2.3837 -0.5802 -3.5732 20 6 1.4986 -0.1190 -2.4475 21 1 -0.3633 -1.0253 0.0708 22 1 -0.3634 0.5739 0.8525 23 1 -0.3633 0.4512 -0.9233 24 1 3.0796 1.3445 -0.1082 25 1 1.5610 1.9274 -0.8308 26 1 0.5470 2.0844 1.4265 27 1 2.0657 1.5015 2.1492 28 1 2.2925 6.0844 3.1774 29 1 1.9177 -2.5483 -0.0580 30 1 0.4779 -2.1920 -1.0295 31 1 3.1532 -2.7709 -2.3554 32 1 2.0573 -4.0883 -1.8611 33 1 1.2041 -3.7422 -3.9348 34 1 0.2830 -2.4973 -3.0746 35 1 2.5414 -2.1659 -4.8921 36 1 3.3677 -0.8207 -3.1707 37 1 2.4876 0.2326 -4.2921 38 1 0.4707 -0.4259 -2.6406 39 1 1.5500 0.9665 -2.3624 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226466780.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:04 Heat of formation + Delta-G solvation = 2.132637 kcal Electronic energy + Delta-G solvation = -16466.952716 eV Core-core repulsion = 14023.194650 eV Total energy + Delta-G solvation = -2443.758067 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.79595 -36.50731 -33.33676 -32.47039 -31.46101 -29.54388 -26.41588 -26.09909 -24.60611 -22.75458 -20.36266 -20.10832 -19.18337 -16.98358 -16.62411 -15.66969 -15.21327 -14.60883 -14.30702 -14.07134 -13.76725 -13.28105 -13.07657 -12.84165 -12.53278 -12.29838 -12.05040 -11.68934 -11.38412 -11.30042 -10.97373 -10.91300 -10.77184 -10.51463 -10.35479 -10.05433 -9.72626 -9.60345 -9.17724 -8.50956 -8.45448 -7.74488 -6.02812 -4.00651 3.33846 3.40588 3.45562 4.04244 4.28670 4.47760 4.68382 4.87501 4.95088 5.07710 5.23529 5.31768 5.40376 5.54078 5.56063 5.59893 5.68725 5.81112 5.88205 5.90396 5.96792 6.08679 6.17041 6.20749 6.24444 6.30418 6.45970 6.50074 6.81451 6.97014 7.19036 7.27184 7.35183 7.62390 7.67049 7.87736 8.55055 9.01426 9.59970 11.10633 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.050752 B = 0.005795 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.574060 B = 4830.585862 C = 5149.265559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.541 5.541 3 C 0.069 3.931 4 C -0.008 4.008 5 C -0.520 4.520 6 H 0.070 0.930 7 C 0.067 3.933 8 N -0.905 5.905 9 Si 0.882 3.118 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.084 3.916 14 H 0.073 0.927 15 C -0.112 4.112 16 C -0.148 4.148 17 C 0.062 3.938 18 N -0.704 5.704 19 C 0.070 3.930 20 C -0.156 4.156 21 H 0.058 0.942 22 H 0.072 0.928 23 H 0.024 0.976 24 H 0.064 0.936 25 H 0.030 0.970 26 H 0.016 0.984 27 H 0.019 0.981 28 H 0.263 0.737 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.339 0.661 36 H 0.030 0.970 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.200 -16.825 -10.117 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.264 5.264 3 C -0.057 4.057 4 C -0.046 4.046 5 C -0.559 4.559 6 H 0.088 0.912 7 C -0.134 4.134 8 N -0.544 5.544 9 Si 0.709 3.291 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.190 1.190 13 C -0.024 4.024 14 H 0.091 0.909 15 C -0.150 4.150 16 C -0.188 4.188 17 C -0.067 4.067 18 N -0.335 5.335 19 C -0.059 4.059 20 C -0.195 4.195 21 H 0.077 0.923 22 H 0.091 0.909 23 H 0.042 0.958 24 H 0.082 0.918 25 H 0.048 0.952 26 H 0.034 0.966 27 H 0.037 0.963 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.156 0.844 36 H 0.049 0.951 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.628 -16.582 -9.626 19.352 hybrid contribution 0.132 -0.090 0.455 0.483 sum -2.496 -16.672 -9.171 19.191 Atomic orbital electron populations 1.22437 0.88535 1.00992 1.00965 1.62439 1.07513 1.16013 1.40391 1.22147 0.98916 0.85349 0.99313 1.19581 0.96518 0.95561 0.92893 1.21094 1.35429 0.95585 1.03780 0.91172 1.24996 0.95313 0.94674 0.98391 1.69921 1.46381 1.07198 1.30879 0.86745 0.80771 0.78513 0.83051 1.20262 1.21512 1.19020 1.20748 0.99648 0.93538 0.88501 0.90881 1.20627 1.01122 0.94565 0.98661 1.21936 1.00219 0.99956 0.96649 1.21732 0.98729 0.93747 0.92462 1.60198 1.41758 1.08691 1.22863 1.21520 0.96157 0.92249 0.95931 1.22142 1.00539 1.01750 0.95119 0.92285 0.90918 0.95758 0.91766 0.95230 0.96600 0.96283 0.92761 0.91281 0.91817 0.91913 0.91372 0.91847 0.91259 0.84372 0.95136 0.91306 0.90905 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.67 60.06 0.52 0.82 16 2 N -0.54 -9.35 4.70 -238.16 -1.12 -10.47 16 3 C 0.07 1.42 4.36 -3.82 -0.02 1.41 16 4 C -0.01 -0.19 3.97 -27.88 -0.11 -0.30 16 5 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 6 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 7 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 8 N -0.90 -28.21 13.96 55.43 0.77 -27.43 16 9 Si 0.88 22.16 27.47 -169.99 -4.67 17.50 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 13 C 0.08 1.19 1.76 -70.40 -0.12 1.07 16 14 H 0.07 1.08 7.39 -51.93 -0.38 0.70 16 15 C -0.11 -1.34 4.38 -29.41 -0.13 -1.47 16 16 C -0.15 -1.44 5.63 -27.32 -0.15 -1.59 16 17 C 0.06 0.60 6.01 -4.49 -0.03 0.57 16 18 N -0.70 -7.30 6.89 -114.90 -0.79 -8.09 16 19 C 0.07 0.82 6.01 -4.49 -0.03 0.79 16 20 C -0.16 -2.10 3.88 -27.32 -0.11 -2.21 16 21 H 0.06 0.81 6.33 -51.93 -0.33 0.48 16 22 H 0.07 1.27 6.30 -51.93 -0.33 0.95 16 23 H 0.02 0.37 6.72 -51.93 -0.35 0.02 16 24 H 0.06 1.33 7.99 -51.93 -0.41 0.91 16 25 H 0.03 0.61 6.49 -51.93 -0.34 0.27 16 26 H 0.02 0.39 5.53 -51.93 -0.29 0.10 16 27 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.76 5.65 -51.93 -0.29 0.47 16 31 H 0.06 0.64 7.08 -51.93 -0.37 0.27 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.74 6.59 -51.93 -0.34 0.40 16 35 H 0.34 2.91 8.92 -39.29 -0.35 2.56 16 36 H 0.03 0.35 6.59 -51.93 -0.34 0.01 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 1.00 6.45 -51.93 -0.33 0.67 16 39 H 0.08 1.20 5.97 -51.93 -0.31 0.89 16 LS Contribution 283.97 15.07 4.28 4.28 Total: -1.00 -30.42 283.97 -8.57 -38.99 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -6.44 Total: -0.38 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -0.60 Total: -14.39 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -1.14 Total: -45.99 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.42 -8.57 -38.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226466780.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.122 kcal (2) G-P(sol) polarization free energy of solvation -30.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds