Wall clock time and date at job start Mon Mar 30 2020 03:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99491 * 2 1 4 4 C 1.52999 * 109.47006 * 66.04728 * 3 2 1 5 5 C 1.50701 * 109.46914 * 179.97438 * 4 3 2 6 6 H 1.07995 * 120.00052 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99599 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99717 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00257 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47294 * 89.99768 * 9 7 5 11 11 H 1.48502 * 109.46886 * 209.99461 * 9 7 5 12 12 H 1.48495 * 109.47277 * 329.99565 * 9 7 5 13 13 C 1.46898 * 111.00104 * 236.04916 * 2 1 3 14 14 H 1.09002 * 108.91927 * 178.95313 * 13 2 1 15 15 C 1.45878 * 108.93781 * 297.65932 * 13 2 1 16 16 C 1.54314 * 112.18607 * 181.72704 * 15 13 2 17 17 C 1.50445 * 108.49922 * 281.46221 * 16 15 13 18 18 N 1.48000 * 112.82242 * 93.72667 * 17 16 15 19 19 C 1.48002 * 114.63454 * 318.09250 * 18 17 16 20 20 C 1.50446 * 112.82527 * 318.09036 * 19 18 17 21 21 H 1.09002 * 109.46864 * 183.94768 * 1 2 3 22 22 H 1.09000 * 109.47480 * 303.94899 * 1 2 3 23 23 H 1.08999 * 109.47171 * 63.95758 * 1 2 3 24 24 H 1.09003 * 109.46692 * 186.04608 * 3 2 1 25 25 H 1.08996 * 109.47463 * 306.04953 * 3 2 1 26 26 H 1.09003 * 109.47096 * 300.00024 * 4 3 2 27 27 H 1.09003 * 109.47198 * 59.99820 * 4 3 2 28 28 H 0.97003 * 119.99975 * 180.02562 * 8 7 5 29 29 H 1.09002 * 108.94139 * 302.42613 * 15 13 2 30 30 H 1.09000 * 108.94040 * 61.03334 * 15 13 2 31 31 H 1.09000 * 109.62901 * 41.16761 * 16 15 13 32 32 H 1.09003 * 109.63058 * 161.75781 * 16 15 13 33 33 H 1.09002 * 108.81153 * 214.58742 * 17 16 15 34 34 H 1.08999 * 108.81103 * 332.86858 * 17 16 15 35 35 H 1.00906 * 111.00057 * 84.83507 * 18 17 16 36 36 H 1.09003 * 108.80925 * 78.95073 * 19 18 17 37 37 H 1.09002 * 108.81114 * 197.33548 * 19 18 17 38 38 H 1.08997 * 109.63168 * 334.02727 * 20 19 18 39 39 H 1.09001 * 109.62830 * 213.43170 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6313 2.0574 1.3183 5 6 2.1718 3.4642 1.3185 6 1 2.7197 3.8323 0.4638 7 6 1.9658 4.2816 2.4096 8 7 2.4371 5.5095 2.4096 9 14 1.0174 3.6451 3.8878 10 1 1.9605 3.0180 4.8483 11 1 0.3154 4.7743 4.5490 12 1 0.0227 2.6372 3.4411 13 6 1.9955 -0.7659 -1.1376 14 1 3.0846 -0.7282 -1.1153 15 6 1.5672 -2.1547 -1.0121 16 6 2.1167 -3.0392 -2.1510 17 6 1.2823 -2.8066 -3.3811 18 7 1.8501 -1.7705 -4.2724 19 6 2.3837 -0.5802 -3.5732 20 6 1.4986 -0.1190 -2.4475 21 1 -0.3633 -1.0253 0.0708 22 1 -0.3634 0.5739 0.8525 23 1 -0.3633 0.4512 -0.9233 24 1 3.0796 1.3445 -0.1082 25 1 1.5610 1.9274 -0.8308 26 1 0.5470 2.0844 1.4265 27 1 2.0657 1.5015 2.1492 28 1 2.2925 6.0844 3.1774 29 1 1.9177 -2.5483 -0.0580 30 1 0.4779 -2.1920 -1.0295 31 1 3.1532 -2.7709 -2.3554 32 1 2.0573 -4.0883 -1.8611 33 1 1.2041 -3.7422 -3.9348 34 1 0.2830 -2.4973 -3.0746 35 1 2.5414 -2.1659 -4.8921 36 1 3.3677 -0.8207 -3.1707 37 1 2.4876 0.2326 -4.2921 38 1 0.4707 -0.4259 -2.6406 39 1 1.5500 0.9665 -2.3624 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226466780.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:04 Heat of formation + Delta-G solvation = -20.458060 kcal Electronic energy + Delta-G solvation = -16467.932322 eV Core-core repulsion = 14023.194650 eV Total energy + Delta-G solvation = -2444.737673 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.90488 -37.71108 -35.24188 -33.67967 -32.82552 -31.15607 -27.90851 -27.17994 -25.88106 -24.21351 -21.92761 -21.10230 -20.42551 -19.05654 -17.62270 -16.90109 -16.37118 -16.24738 -15.80368 -15.49684 -15.08910 -14.61143 -14.30301 -14.15846 -14.04438 -13.39079 -13.34294 -13.14121 -12.80003 -12.66903 -12.59461 -12.11435 -11.89958 -11.74163 -11.67107 -11.60394 -11.49310 -11.35392 -11.13484 -10.76254 -9.28897 -9.11549 -8.31069 -6.35195 1.35741 1.36671 1.49536 2.35446 2.99468 3.04558 3.23953 3.67189 3.91213 4.05222 4.15967 4.25487 4.28539 4.36891 4.47524 4.56423 4.60454 4.67035 4.72382 4.82944 4.86139 4.94517 5.00763 5.04550 5.11853 5.16437 5.23558 5.29019 5.36647 5.41956 5.48721 5.61954 6.11188 6.15041 6.25706 6.31600 6.56164 6.72399 7.29613 8.85731 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.050752 B = 0.005795 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.574060 B = 4830.585862 C = 5149.265559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.548 5.548 3 C 0.083 3.917 4 C 0.000 4.000 5 C -0.533 4.533 6 H 0.031 0.969 7 C 0.007 3.993 8 N -0.950 5.950 9 Si 0.952 3.048 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.249 1.249 13 C 0.088 3.912 14 H 0.065 0.935 15 C -0.109 4.109 16 C -0.138 4.138 17 C 0.062 3.938 18 N -0.708 5.708 19 C 0.074 3.926 20 C -0.148 4.148 21 H 0.086 0.914 22 H 0.056 0.944 23 H 0.026 0.974 24 H 0.055 0.945 25 H 0.022 0.978 26 H 0.020 0.980 27 H 0.017 0.983 28 H 0.267 0.733 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.351 0.649 36 H 0.032 0.968 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.211 -19.419 -10.074 22.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.270 5.270 3 C -0.044 4.044 4 C -0.038 4.038 5 C -0.572 4.572 6 H 0.050 0.950 7 C -0.190 4.190 8 N -0.591 5.591 9 Si 0.776 3.224 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.173 1.173 13 C -0.020 4.020 14 H 0.083 0.917 15 C -0.147 4.147 16 C -0.178 4.178 17 C -0.067 4.067 18 N -0.340 5.340 19 C -0.055 4.055 20 C -0.187 4.187 21 H 0.104 0.896 22 H 0.075 0.925 23 H 0.045 0.955 24 H 0.074 0.926 25 H 0.040 0.960 26 H 0.038 0.962 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.170 0.830 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.636 -19.203 -9.609 21.778 hybrid contribution 0.493 0.738 0.355 0.956 sum -3.143 -18.465 -9.254 20.892 Atomic orbital electron populations 1.22457 0.87508 1.02458 1.00341 1.62382 1.08488 1.13804 1.42372 1.21805 0.98453 0.87217 0.96965 1.19453 0.96276 0.93193 0.94900 1.21416 1.35110 0.97964 1.02675 0.95030 1.25968 0.96386 0.94737 1.01864 1.70066 1.48061 1.08775 1.32212 0.85627 0.79640 0.78394 0.78775 1.19225 1.20784 1.17251 1.20815 0.99085 0.94470 0.87618 0.91725 1.20597 1.01406 0.93183 0.99523 1.21877 0.99785 1.00464 0.95682 1.21764 0.98013 0.94306 0.92578 1.60149 1.42167 1.08677 1.23055 1.21395 0.95731 0.93043 0.95324 1.22007 1.00928 1.00192 0.95561 0.89583 0.92532 0.95516 0.92646 0.95969 0.96187 0.96418 0.92418 0.91752 0.91410 0.92228 0.89397 0.89668 0.92161 0.82998 0.95016 0.91446 0.90902 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 8.67 127.69 1.11 1.72 16 2 N -0.55 -18.41 4.70 -907.39 -4.27 -22.67 16 3 C 0.08 3.44 4.36 86.30 0.38 3.82 16 4 C 0.00 -0.02 3.97 29.85 0.12 0.09 16 5 C -0.53 -31.62 9.66 25.60 0.25 -31.38 16 6 H 0.03 2.05 7.99 -2.91 -0.02 2.02 16 7 C 0.01 0.44 5.47 84.65 0.46 0.90 16 8 N -0.95 -60.58 13.96 21.45 0.30 -60.29 16 9 Si 0.95 45.46 27.47 68.60 1.88 47.34 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 13 C 0.09 2.39 1.76 43.18 0.08 2.46 16 14 H 0.06 1.86 7.39 -2.39 -0.02 1.85 16 15 C -0.11 -2.36 4.38 28.86 0.13 -2.23 16 16 C -0.14 -2.28 5.63 30.21 0.17 -2.11 16 17 C 0.06 1.01 6.01 85.26 0.51 1.52 16 18 N -0.71 -13.03 6.89 -517.45 -3.56 -16.60 16 19 C 0.07 1.63 6.01 85.26 0.51 2.14 16 20 C -0.15 -3.85 3.88 30.21 0.12 -3.73 16 21 H 0.09 2.13 6.33 -2.39 -0.02 2.12 16 22 H 0.06 1.89 6.30 -2.39 -0.02 1.88 16 23 H 0.03 0.79 6.72 -2.39 -0.02 0.77 16 24 H 0.05 2.35 7.99 -2.39 -0.02 2.33 16 25 H 0.02 0.94 6.49 -2.39 -0.02 0.93 16 26 H 0.02 0.96 5.53 -2.39 -0.01 0.95 16 27 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 28 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 1.42 5.65 -2.39 -0.01 1.40 16 31 H 0.06 1.05 7.08 -2.39 -0.02 1.03 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 1.11 6.59 -2.39 -0.02 1.09 16 35 H 0.35 5.12 8.92 -89.69 -0.80 4.32 16 36 H 0.03 0.69 6.59 -2.39 -0.02 0.67 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.07 1.90 6.45 -2.39 -0.02 1.88 16 39 H 0.06 1.71 5.97 -2.39 -0.01 1.70 16 Total: -1.00 -65.86 283.97 -1.65 -67.51 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.17 Total: 11.49 kcal Atomic # 6 Polarization: -30.61 SS G_CDS: 3.83 Total: -26.78 kcal Atomic # 7 Polarization: -92.03 SS G_CDS: -7.53 Total: -99.56 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.34 kcal Total: -65.86 -1.65 -67.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226466780.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.049 kcal (2) G-P(sol) polarization free energy of solvation -65.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds