Wall clock time and date at job start Mon Mar 30 2020 03:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46904 * 110.99365 * 2 1 4 4 C 1.53005 * 109.46865 * 185.29040 * 3 2 1 5 5 H 1.09004 * 109.87614 * 304.04304 * 4 3 2 6 6 C 1.54316 * 109.88910 * 65.23615 * 4 3 2 7 7 C 1.55139 * 103.01962 * 141.69187 * 6 4 3 8 8 C 1.54913 * 101.65340 * 324.34824 * 7 6 4 9 9 N 1.47437 * 109.88841 * 183.01047 * 4 3 2 10 10 C 1.46890 * 111.00286 * 3.84973 * 9 4 3 11 11 C 1.53007 * 109.47353 * 175.15625 * 10 9 4 12 12 C 1.52994 * 109.46881 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47009 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99508 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00348 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00077 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00342 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47409 * 89.99382 * 17 15 13 19 19 H 1.48504 * 109.46616 * 329.99453 * 17 15 13 20 20 H 1.48497 * 109.47051 * 209.99764 * 17 15 13 21 21 H 1.08997 * 109.46947 * 299.99484 * 1 2 3 22 22 H 1.08999 * 109.47462 * 60.00036 * 1 2 3 23 23 H 1.09001 * 109.46665 * 180.02562 * 1 2 3 24 24 H 1.00889 * 111.00072 * 123.95095 * 2 1 3 25 25 H 1.08997 * 109.47210 * 65.29449 * 3 2 1 26 26 H 1.08995 * 109.47337 * 305.28844 * 3 2 1 27 27 H 1.09005 * 110.70876 * 260.07703 * 6 4 3 28 28 H 1.08999 * 110.70340 * 23.13309 * 6 4 3 29 29 H 1.09000 * 110.98972 * 82.44037 * 7 6 4 30 30 H 1.08999 * 110.99283 * 206.22163 * 7 6 4 31 31 H 1.09002 * 110.36840 * 278.24348 * 8 7 6 32 32 H 1.08997 * 110.37428 * 155.89530 * 8 7 6 33 33 H 1.09004 * 109.47358 * 55.15515 * 10 9 4 34 34 H 1.09000 * 109.47320 * 295.15888 * 10 9 4 35 35 H 1.09001 * 109.46811 * 60.00158 * 11 10 9 36 36 H 1.08992 * 109.47045 * 300.00046 * 11 10 9 37 37 H 1.08995 * 109.47845 * 60.00075 * 12 11 10 38 38 H 1.09004 * 109.47579 * 299.99635 * 12 11 10 39 39 H 0.97000 * 119.99832 * 0.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5191 1.3330 -0.1330 5 1 3.9453 0.7222 0.6629 6 6 3.9115 0.7560 -1.5094 7 6 5.1374 1.6170 -1.9127 8 6 4.7506 3.0017 -1.3358 9 7 4.0636 2.7013 -0.0616 10 6 2.9995 3.6780 0.2058 11 6 3.6162 5.0658 0.3926 12 6 2.5078 6.0831 0.6704 13 6 3.1151 7.4502 0.8538 14 1 4.1847 7.5801 0.7799 15 6 2.3054 8.5346 1.1168 16 7 1.0029 8.3763 1.2073 17 14 3.0582 10.2290 1.3448 18 1 3.1333 10.9181 0.0315 19 1 4.4244 10.0915 1.9105 20 1 2.2156 11.0241 2.2736 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8306 -0.5260 0.7813 25 1 1.7245 1.8646 0.9336 26 1 1.5713 1.9234 -0.8388 27 1 4.1902 -0.2942 -1.4218 28 1 3.0985 0.8791 -2.2249 29 1 6.0487 1.2410 -1.4476 30 1 5.2441 1.6610 -2.9966 31 1 4.0767 3.5217 -2.0168 32 1 5.6434 3.5998 -1.1537 33 1 2.4643 3.3934 1.1117 34 1 2.3058 3.6988 -0.6346 35 1 4.1514 5.3504 -0.5133 36 1 4.3098 5.0450 1.2330 37 1 1.9721 5.7988 1.5761 38 1 1.8144 6.1039 -0.1704 39 1 0.6120 7.4964 1.0893 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227728837.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:48 Heat of formation + Delta-G solvation = -11.854866 kcal Electronic energy + Delta-G solvation = -16044.755187 eV Core-core repulsion = 13600.390577 eV Total energy + Delta-G solvation = -2444.364610 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.56434 -35.75123 -34.49521 -32.53098 -30.41909 -29.59705 -25.83469 -25.74036 -23.39291 -22.89740 -21.37591 -20.39879 -19.12743 -16.76996 -16.11277 -15.89111 -15.33065 -14.83656 -14.29789 -14.19647 -13.70800 -13.06923 -13.04545 -12.96687 -12.33655 -12.24661 -11.90830 -11.68168 -11.42005 -11.10668 -10.97306 -10.82737 -10.68128 -10.62911 -10.46680 -10.10132 -9.76714 -9.68532 -8.56859 -8.49602 -8.28931 -8.04910 -6.33038 -4.01267 3.45427 3.49494 3.65298 3.90932 4.38378 4.57832 4.71477 4.81466 4.83925 5.17493 5.24552 5.32019 5.41787 5.44205 5.46511 5.65573 5.66925 5.72529 5.72727 5.78534 5.90857 6.01154 6.06586 6.20096 6.25192 6.35065 6.60238 6.65751 6.77382 6.98944 7.13521 7.30456 7.36247 7.46857 7.59626 8.27337 8.50989 8.92665 9.71019 11.07683 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.032166 B = 0.005499 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.283104 B = 5090.736493 C = 5808.904394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.692 5.692 3 C 0.038 3.962 4 C 0.075 3.925 5 H 0.080 0.920 6 C -0.121 4.121 7 C -0.134 4.134 8 C 0.043 3.957 9 N -0.524 5.524 10 C 0.047 3.953 11 C -0.099 4.099 12 C 0.009 3.991 13 C -0.598 4.598 14 H 0.049 0.951 15 C 0.013 3.987 16 N -0.916 5.916 17 Si 1.071 2.929 18 H -0.288 1.288 19 H -0.288 1.288 20 H -0.284 1.284 21 H 0.022 0.978 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.340 0.660 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.030 0.970 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.005 0.995 38 H 0.003 0.997 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.446 -16.649 -4.270 17.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.323 5.323 3 C -0.091 4.091 4 C -0.034 4.034 5 H 0.098 0.902 6 C -0.159 4.159 7 C -0.172 4.172 8 C -0.084 4.084 9 N -0.248 5.248 10 C -0.081 4.081 11 C -0.137 4.137 12 C -0.029 4.029 13 C -0.637 4.637 14 H 0.067 0.933 15 C -0.190 4.190 16 N -0.553 5.553 17 Si 0.900 3.100 18 H -0.215 1.215 19 H -0.215 1.215 20 H -0.210 1.210 21 H 0.041 0.959 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.157 0.843 25 H 0.061 0.939 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.024 0.976 38 H 0.022 0.978 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.476 -15.085 -4.224 16.046 hybrid contribution -0.515 -1.349 -0.045 1.445 sum 2.961 -16.434 -4.269 17.235 Atomic orbital electron populations 1.22182 0.87801 1.01621 1.00630 1.60354 1.07712 1.14452 1.49762 1.22702 0.95732 0.89470 1.01228 1.22376 0.92203 0.90978 0.97803 0.90222 1.22670 0.97403 0.99497 0.96339 1.22754 0.98487 0.95571 1.00357 1.23045 0.98973 0.96666 0.89753 1.63818 1.27271 1.01121 1.32582 1.22533 0.92511 0.93240 0.99786 1.21515 0.99542 0.91772 1.00836 1.19201 0.93886 0.94269 0.95508 1.22088 0.95055 0.93603 1.52928 0.93294 1.25865 0.95202 1.03998 0.93983 1.70758 1.11043 1.26679 1.46785 0.83512 0.74843 0.74854 0.76794 1.21496 1.21454 1.21017 0.95916 0.91776 0.91520 0.84342 0.93935 0.90828 0.91067 0.91415 0.90980 0.91195 0.93549 0.90234 0.91149 0.95198 0.93336 0.92502 0.97638 0.97839 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.69 60.07 0.64 0.91 16 2 N -0.69 -7.53 6.58 -121.13 -0.80 -8.32 16 3 C 0.04 0.50 3.75 -3.82 -0.01 0.48 16 4 C 0.08 0.98 3.67 -66.73 -0.24 0.74 16 5 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 6 C -0.12 -1.40 6.24 -24.91 -0.16 -1.55 16 7 C -0.13 -1.54 7.08 -24.59 -0.17 -1.71 16 8 C 0.04 0.62 5.53 -2.29 -0.01 0.61 16 9 N -0.52 -8.20 5.20 -223.34 -1.16 -9.36 16 10 C 0.05 0.84 3.67 -3.83 -0.01 0.82 16 11 C -0.10 -2.14 5.12 -26.73 -0.14 -2.28 16 12 C 0.01 0.23 4.28 -27.88 -0.12 0.12 16 13 C -0.60 -17.61 9.11 -34.44 -0.31 -17.92 16 14 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 15 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 16 N -0.92 -28.72 13.65 55.43 0.76 -27.97 16 17 Si 1.07 25.92 29.90 -169.99 -5.08 20.84 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.34 3.22 8.87 -39.30 -0.35 2.88 16 25 H 0.04 0.60 6.26 -51.93 -0.33 0.27 16 26 H 0.07 1.05 6.95 -51.93 -0.36 0.68 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.83 7.80 -51.93 -0.40 0.42 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.70 7.71 -51.93 -0.40 0.30 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 1.27 6.32 -51.93 -0.33 0.94 16 34 H 0.03 0.54 6.76 -51.93 -0.35 0.19 16 35 H 0.05 1.05 7.32 -51.93 -0.38 0.67 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.01 0.15 8.01 -51.93 -0.42 -0.27 16 38 H 0.00 0.09 8.01 -51.93 -0.42 -0.32 16 39 H 0.27 8.36 7.22 -40.82 -0.29 8.06 16 LS Contribution 303.50 15.07 4.57 4.57 Total: -1.00 -31.13 303.50 -9.38 -40.52 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -7.03 Total: -0.77 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: -0.64 Total: -19.50 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: -1.20 Total: -45.65 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -5.08 Total: 20.84 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.13 -9.38 -40.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227728837.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.661 kcal (2) G-P(sol) polarization free energy of solvation -31.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds