Wall clock time and date at job start Mon Mar 30 2020 03:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46904 * 110.99365 * 2 1 4 4 C 1.53005 * 109.46865 * 185.29040 * 3 2 1 5 5 H 1.09004 * 109.87614 * 304.04304 * 4 3 2 6 6 C 1.54316 * 109.88910 * 65.23615 * 4 3 2 7 7 C 1.55139 * 103.01962 * 141.69187 * 6 4 3 8 8 C 1.54913 * 101.65340 * 324.34824 * 7 6 4 9 9 N 1.47437 * 109.88841 * 183.01047 * 4 3 2 10 10 C 1.46890 * 111.00286 * 3.84973 * 9 4 3 11 11 C 1.53007 * 109.47353 * 175.15625 * 10 9 4 12 12 C 1.52994 * 109.46881 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47009 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99508 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00348 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00077 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00342 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47409 * 89.99382 * 17 15 13 19 19 H 1.48504 * 109.46616 * 329.99453 * 17 15 13 20 20 H 1.48497 * 109.47051 * 209.99764 * 17 15 13 21 21 H 1.08997 * 109.46947 * 299.99484 * 1 2 3 22 22 H 1.08999 * 109.47462 * 60.00036 * 1 2 3 23 23 H 1.09001 * 109.46665 * 180.02562 * 1 2 3 24 24 H 1.00889 * 111.00072 * 123.95095 * 2 1 3 25 25 H 1.08997 * 109.47210 * 65.29449 * 3 2 1 26 26 H 1.08995 * 109.47337 * 305.28844 * 3 2 1 27 27 H 1.09005 * 110.70876 * 260.07703 * 6 4 3 28 28 H 1.08999 * 110.70340 * 23.13309 * 6 4 3 29 29 H 1.09000 * 110.98972 * 82.44037 * 7 6 4 30 30 H 1.08999 * 110.99283 * 206.22163 * 7 6 4 31 31 H 1.09002 * 110.36840 * 278.24348 * 8 7 6 32 32 H 1.08997 * 110.37428 * 155.89530 * 8 7 6 33 33 H 1.09004 * 109.47358 * 55.15515 * 10 9 4 34 34 H 1.09000 * 109.47320 * 295.15888 * 10 9 4 35 35 H 1.09001 * 109.46811 * 60.00158 * 11 10 9 36 36 H 1.08992 * 109.47045 * 300.00046 * 11 10 9 37 37 H 1.08995 * 109.47845 * 60.00075 * 12 11 10 38 38 H 1.09004 * 109.47579 * 299.99635 * 12 11 10 39 39 H 0.97000 * 119.99832 * 0.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5191 1.3330 -0.1330 5 1 3.9453 0.7222 0.6629 6 6 3.9115 0.7560 -1.5094 7 6 5.1374 1.6170 -1.9127 8 6 4.7506 3.0017 -1.3358 9 7 4.0636 2.7013 -0.0616 10 6 2.9995 3.6780 0.2058 11 6 3.6162 5.0658 0.3926 12 6 2.5078 6.0831 0.6704 13 6 3.1151 7.4502 0.8538 14 1 4.1847 7.5801 0.7799 15 6 2.3054 8.5346 1.1168 16 7 1.0029 8.3763 1.2073 17 14 3.0582 10.2290 1.3448 18 1 3.1333 10.9181 0.0315 19 1 4.4244 10.0915 1.9105 20 1 2.2156 11.0241 2.2736 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8306 -0.5260 0.7813 25 1 1.7245 1.8646 0.9336 26 1 1.5713 1.9234 -0.8388 27 1 4.1902 -0.2942 -1.4218 28 1 3.0985 0.8791 -2.2249 29 1 6.0487 1.2410 -1.4476 30 1 5.2441 1.6610 -2.9966 31 1 4.0767 3.5217 -2.0168 32 1 5.6434 3.5998 -1.1537 33 1 2.4643 3.3934 1.1117 34 1 2.3058 3.6988 -0.6346 35 1 4.1514 5.3504 -0.5133 36 1 4.3098 5.0450 1.2330 37 1 1.9721 5.7988 1.5761 38 1 1.8144 6.1039 -0.1704 39 1 0.6120 7.4964 1.0893 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227728837.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:47 Heat of formation + Delta-G solvation = -33.883221 kcal Electronic energy + Delta-G solvation = -16045.710409 eV Core-core repulsion = 13600.390577 eV Total energy + Delta-G solvation = -2445.319831 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.72207 -36.84515 -36.30793 -34.31560 -31.76165 -30.91805 -27.59860 -26.78230 -24.92164 -24.26292 -22.84432 -21.73732 -20.39674 -18.93275 -17.27263 -16.97669 -16.48864 -16.18900 -15.66009 -15.52400 -15.26629 -14.99674 -14.36615 -14.00942 -13.80958 -13.56737 -13.34302 -12.90822 -12.71310 -12.60838 -12.37385 -12.17557 -12.02577 -11.96430 -11.82556 -11.71602 -11.55827 -11.52677 -10.68654 -10.56976 -9.49390 -9.30639 -8.72415 -6.42575 1.50779 1.60515 1.78711 2.54750 2.83338 3.12992 3.31392 3.66289 3.79466 3.81659 4.06207 4.14231 4.25269 4.33339 4.42461 4.45471 4.55261 4.58891 4.59667 4.69887 4.76364 4.87377 4.95243 4.96592 4.97863 5.00771 5.09903 5.20051 5.38425 5.39344 5.48068 5.79295 5.94918 6.02148 6.10625 6.15922 6.38645 6.55019 7.39745 8.68462 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.032166 B = 0.005499 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.283104 B = 5090.736493 C = 5808.904394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.688 5.688 3 C 0.047 3.953 4 C 0.074 3.926 5 H 0.089 0.911 6 C -0.113 4.113 7 C -0.123 4.123 8 C 0.036 3.964 9 N -0.532 5.532 10 C 0.064 3.936 11 C -0.084 4.084 12 C 0.011 3.989 13 C -0.619 4.619 14 H 0.049 0.951 15 C -0.040 4.040 16 N -0.938 5.938 17 Si 1.122 2.878 18 H -0.271 1.271 19 H -0.269 1.269 20 H -0.281 1.281 21 H 0.018 0.982 22 H 0.056 0.944 23 H 0.088 0.912 24 H 0.350 0.650 25 H 0.026 0.974 26 H 0.057 0.943 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.025 0.975 35 H 0.048 0.952 36 H 0.050 0.950 37 H -0.012 1.012 38 H -0.014 1.014 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.689 -17.606 -4.662 18.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.320 5.320 3 C -0.083 4.083 4 C -0.034 4.034 5 H 0.107 0.893 6 C -0.151 4.151 7 C -0.161 4.161 8 C -0.092 4.092 9 N -0.257 5.257 10 C -0.065 4.065 11 C -0.122 4.122 12 C -0.027 4.027 13 C -0.657 4.657 14 H 0.068 0.932 15 C -0.237 4.237 16 N -0.576 5.576 17 Si 0.942 3.058 18 H -0.196 1.196 19 H -0.194 1.194 20 H -0.206 1.206 21 H 0.036 0.964 22 H 0.075 0.925 23 H 0.106 0.894 24 H 0.168 0.832 25 H 0.044 0.956 26 H 0.075 0.925 27 H 0.109 0.891 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.006 0.994 38 H 0.004 0.996 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.725 -16.085 -4.623 17.390 hybrid contribution -0.921 -1.114 0.079 1.447 sum 3.804 -17.198 -4.545 18.191 Atomic orbital electron populations 1.22230 0.87138 1.02863 1.00068 1.60340 1.08335 1.13018 1.50287 1.22508 0.95758 0.90445 0.99625 1.22462 0.92131 0.89498 0.99300 0.89259 1.22623 0.97175 1.00447 0.94881 1.22729 0.98736 0.93260 1.01353 1.23122 0.98334 0.98578 0.89123 1.63767 1.26434 1.01801 1.33657 1.22204 0.92749 0.91931 0.99567 1.21289 0.97749 0.92841 1.00366 1.19136 0.94759 0.94898 0.93880 1.22515 0.95309 0.95083 1.52761 0.93222 1.27519 0.94904 1.08433 0.92848 1.70897 1.12171 1.25935 1.48564 0.82888 0.74916 0.70243 0.77727 1.19616 1.19360 1.20622 0.96383 0.92479 0.89351 0.83171 0.95592 0.92497 0.89147 0.92079 0.89859 0.89504 0.94800 0.90688 0.91424 0.95705 0.93354 0.93135 0.99401 0.99591 0.93655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.69 127.69 1.37 1.86 16 2 N -0.69 -13.94 6.58 -537.13 -3.53 -17.47 16 3 C 0.05 1.18 3.75 86.30 0.32 1.51 16 4 C 0.07 1.83 3.67 45.26 0.17 2.00 16 5 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 6 C -0.11 -2.34 6.24 31.77 0.20 -2.14 16 7 C -0.12 -2.51 7.08 31.98 0.23 -2.29 16 8 C 0.04 1.00 5.53 86.77 0.48 1.48 16 9 N -0.53 -16.29 5.20 -860.52 -4.48 -20.76 16 10 C 0.06 2.32 3.67 86.31 0.32 2.63 16 11 C -0.08 -3.73 5.12 30.59 0.16 -3.58 16 12 C 0.01 0.59 4.28 29.85 0.13 0.72 16 13 C -0.62 -36.88 9.11 25.60 0.23 -36.65 16 14 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 15 C -0.04 -2.40 5.46 84.65 0.46 -1.94 16 16 N -0.94 -59.83 13.65 21.45 0.29 -59.54 16 17 Si 1.12 51.52 29.90 68.60 2.05 53.57 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H 0.02 0.35 8.14 -2.39 -0.02 0.33 16 22 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.35 5.94 8.87 -89.70 -0.80 5.15 16 25 H 0.03 0.74 6.26 -2.39 -0.01 0.72 16 26 H 0.06 1.63 6.95 -2.39 -0.02 1.61 16 27 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.06 1.37 7.80 -2.39 -0.02 1.35 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.03 1.02 7.71 -2.39 -0.02 1.00 16 32 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.07 2.49 6.32 -2.38 -0.02 2.48 16 34 H 0.02 0.93 6.76 -2.39 -0.02 0.91 16 35 H 0.05 2.11 7.32 -2.39 -0.02 2.09 16 36 H 0.05 2.27 8.14 -2.39 -0.02 2.26 16 37 H -0.01 -0.71 8.01 -2.39 -0.02 -0.73 16 38 H -0.01 -0.82 8.01 -2.38 -0.02 -0.84 16 39 H 0.25 16.43 7.22 -92.71 -0.67 15.76 16 Total: -1.00 -66.82 303.50 -1.31 -68.13 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.30 Total: 12.47 kcal Atomic # 6 Polarization: -40.45 SS G_CDS: 4.06 Total: -36.40 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -7.72 Total: -97.77 kcal Atomic # 14 Polarization: 51.52 SS G_CDS: 2.05 Total: 53.57 kcal Total: -66.82 -1.31 -68.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227728837.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.243 kcal (2) G-P(sol) polarization free energy of solvation -66.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds