Wall clock time and date at job start Mon Mar 30 2020 03:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46903 * 109.47002 * 2 1 4 4 C 1.46895 * 110.99960 * 163.95038 * 3 2 1 5 5 C 1.53004 * 109.46979 * 280.10097 * 4 3 2 6 6 H 1.08994 * 110.36574 * 295.29271 * 5 4 3 7 7 C 1.54384 * 110.51049 * 172.87523 * 5 4 3 8 8 C 1.54261 * 105.05627 * 217.31657 * 7 5 4 9 9 C 1.54373 * 105.06467 * 0.02562 * 8 7 5 10 10 N 1.48559 * 110.41252 * 57.64533 * 5 4 3 11 11 C 1.46899 * 110.99474 * 287.90145 * 3 2 1 12 12 H 1.08997 * 109.47080 * 192.01053 * 11 3 2 13 13 C 1.53003 * 109.47135 * 312.00912 * 11 3 2 14 14 C 1.50700 * 109.47288 * 72.01173 * 11 3 2 15 15 H 1.07995 * 120.00144 * 3.87954 * 14 11 3 16 16 C 1.37880 * 119.99908 * 183.88008 * 14 11 3 17 17 N 1.31516 * 119.99767 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 119.99882 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47146 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46937 * 120.00021 * 18 16 14 21 21 H 1.48503 * 109.47088 * 239.99950 * 18 16 14 22 22 H 1.09007 * 109.46916 * 188.57771 * 1 2 3 23 23 H 1.08999 * 109.47245 * 308.57284 * 1 2 3 24 24 H 1.08990 * 109.47124 * 68.58025 * 1 2 3 25 25 H 1.09001 * 109.47172 * 239.99422 * 2 1 3 26 26 H 1.09004 * 109.46871 * 119.99228 * 2 1 3 27 27 H 1.08997 * 109.47482 * 160.09844 * 4 3 2 28 28 H 1.09004 * 109.47186 * 40.09888 * 4 3 2 29 29 H 1.08995 * 110.32432 * 336.21558 * 7 5 4 30 30 H 1.09003 * 110.31647 * 98.42149 * 7 5 4 31 31 H 1.08997 * 110.31901 * 118.90456 * 8 7 5 32 32 H 1.09001 * 110.31983 * 240.99985 * 8 7 5 33 33 H 1.09006 * 110.40868 * 265.07666 * 9 8 7 34 34 H 1.09001 * 110.41424 * 142.63074 * 9 8 7 35 35 H 1.00907 * 110.99577 * 277.93808 * 10 5 4 36 36 H 1.08999 * 109.47155 * 300.00124 * 13 11 3 37 37 H 1.09000 * 109.47335 * 60.00521 * 13 11 3 38 38 H 1.09002 * 109.46731 * 180.02562 * 13 11 3 39 39 H 0.97008 * 119.99502 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4377 1.4420 0.3791 5 6 3.5632 1.3410 1.9007 6 1 3.1055 2.2077 2.3774 7 6 5.0457 1.2193 2.3142 8 6 5.0501 0.2396 3.5058 9 6 3.5703 -0.1487 3.7115 10 7 2.9339 0.0876 2.3904 11 6 1.7976 2.0217 -1.3051 12 1 2.3517 2.9593 -1.3509 13 6 2.2815 1.0885 -2.4168 14 6 0.3272 2.2980 -1.4856 15 1 -0.3646 2.0854 -0.6840 16 6 -0.1349 2.8221 -2.6742 17 7 0.7075 3.0805 -3.6506 18 14 -1.9577 3.1639 -2.8982 19 1 -2.6875 2.7884 -1.6607 20 1 -2.1602 4.6092 -3.1725 21 1 -2.4742 2.3663 -4.0395 22 1 -0.3633 -1.0162 0.1533 23 1 -0.3634 0.6407 0.8034 24 1 -0.3633 0.3753 -0.9566 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 3.8666 2.3853 0.0410 28 1 3.9716 0.6130 -0.0853 29 1 5.6365 0.8172 1.4913 30 1 5.4340 2.1905 2.6211 31 1 5.6433 -0.6433 3.2677 32 1 5.4425 0.7294 4.3970 33 1 3.1132 0.4849 4.4717 34 1 3.4881 -1.1990 3.9912 35 1 1.9352 0.1972 2.4843 36 1 3.3451 0.8887 -2.2862 37 1 1.7274 0.1510 -2.3711 38 1 2.1172 1.5612 -3.3851 39 1 0.3823 3.4489 -4.4870 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233518562.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:41 Heat of formation + Delta-G solvation = 1.627654 kcal Electronic energy + Delta-G solvation = -16843.731713 eV Core-core repulsion = 14399.951748 eV Total energy + Delta-G solvation = -2443.779964 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.12266 -38.30899 -34.71532 -32.22457 -31.53130 -30.85920 -28.84732 -27.36425 -25.06554 -23.70551 -21.81800 -21.05150 -20.45593 -18.36890 -17.83441 -16.90395 -16.22175 -15.96810 -15.54699 -15.00468 -14.65460 -14.20951 -13.75240 -13.47655 -13.42413 -13.08620 -13.02074 -12.81799 -12.67499 -12.53532 -12.35140 -12.21946 -12.07268 -11.97255 -11.79046 -11.48685 -11.30474 -10.90197 -10.68849 -10.35434 -9.39385 -8.71692 -8.02158 -6.09096 1.42553 1.45073 1.56188 2.46768 3.24425 3.36501 3.43295 3.93676 3.96307 4.19270 4.34861 4.45582 4.57043 4.71858 4.74229 4.76001 4.85716 4.89199 4.95164 5.00106 5.05840 5.07636 5.11699 5.18022 5.22451 5.32253 5.39758 5.50101 5.54858 5.76861 5.88654 5.94352 6.00335 6.34679 6.45519 6.64858 6.88142 7.02495 7.56541 9.02671 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.044786 B = 0.007006 C = 0.006591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.043862 B = 3995.397596 C = 4247.045382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.044 3.956 3 N -0.535 5.535 4 C 0.072 3.928 5 C 0.081 3.919 6 H 0.043 0.957 7 C -0.120 4.120 8 C -0.117 4.117 9 C 0.030 3.970 10 N -0.667 5.667 11 C 0.212 3.788 12 H -0.003 1.003 13 C -0.159 4.159 14 C -0.496 4.496 15 H 0.074 0.926 16 C 0.003 3.997 17 N -0.926 5.926 18 Si 0.953 3.047 19 H -0.265 1.265 20 H -0.285 1.285 21 H -0.285 1.285 22 H 0.053 0.947 23 H 0.046 0.954 24 H 0.056 0.944 25 H 0.011 0.989 26 H 0.111 0.889 27 H 0.051 0.949 28 H 0.024 0.976 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.342 0.658 36 H 0.012 0.988 37 H 0.034 0.966 38 H 0.067 0.933 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.777 -5.856 12.831 15.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 N -0.258 5.258 4 C -0.057 4.057 5 C -0.030 4.030 6 H 0.061 0.939 7 C -0.159 4.159 8 C -0.155 4.155 9 C -0.098 4.098 10 N -0.298 5.298 11 C 0.105 3.895 12 H 0.015 0.985 13 C -0.218 4.218 14 C -0.535 4.535 15 H 0.092 0.908 16 C -0.194 4.194 17 N -0.568 5.568 18 Si 0.780 3.220 19 H -0.189 1.189 20 H -0.212 1.212 21 H -0.211 1.211 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.029 0.971 26 H 0.129 0.871 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.159 0.841 36 H 0.031 0.969 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.887 -6.012 12.624 15.171 hybrid contribution -0.807 0.749 -0.880 1.410 sum 5.080 -5.263 11.744 13.836 Atomic orbital electron populations 1.22032 0.96041 0.99614 1.02509 1.22446 0.95739 0.89025 1.01113 1.62272 1.15636 1.17446 1.30459 1.22005 0.89750 0.98949 0.95039 1.22377 0.95049 0.91570 0.93964 0.93855 1.22341 0.94533 1.00296 0.98703 1.22265 0.96116 0.99200 0.97920 1.23004 0.94780 1.01618 0.90425 1.63784 1.09541 1.33196 1.23277 1.19130 0.95468 0.91114 0.83794 0.98544 1.22249 0.95652 0.99674 1.04270 1.21705 0.93430 1.39147 0.99172 0.90764 1.25698 1.01445 0.96150 0.96082 1.70013 1.35304 1.46126 1.05333 0.85566 0.81030 0.77386 0.78036 1.18899 1.21173 1.21076 0.92825 0.93462 0.92504 0.97061 0.87123 0.93000 0.95739 0.91697 0.90469 0.90923 0.89920 0.93840 0.89534 0.84118 0.96893 0.94718 0.91456 0.93398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.61 8.51 71.98 0.61 -5.00 16 2 C 0.04 1.74 4.68 86.30 0.40 2.14 16 3 N -0.53 -22.80 4.36 -875.36 -3.81 -26.61 16 4 C 0.07 2.64 4.33 86.31 0.37 3.02 16 5 C 0.08 2.37 3.45 45.07 0.16 2.53 16 6 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 7 C -0.12 -2.79 6.55 31.49 0.21 -2.58 16 8 C -0.12 -2.20 7.00 31.49 0.22 -1.98 16 9 C 0.03 0.62 7.47 86.45 0.65 1.27 16 10 N -0.67 -17.97 4.98 -479.05 -2.39 -20.36 16 11 C 0.21 10.92 2.34 44.17 0.10 11.02 16 12 H 0.00 -0.19 7.65 -2.39 -0.02 -0.21 16 13 C -0.16 -8.08 8.10 71.98 0.58 -7.50 16 14 C -0.50 -27.00 6.42 25.60 0.16 -26.84 16 15 H 0.07 3.98 5.47 -2.91 -0.02 3.96 16 16 C 0.00 0.18 5.29 84.66 0.45 0.62 16 17 N -0.93 -54.05 11.04 21.45 0.24 -53.81 16 18 Si 0.95 44.16 29.54 68.60 2.03 46.18 16 19 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 22 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 23 H 0.05 1.81 7.84 -2.39 -0.02 1.79 16 24 H 0.06 2.59 5.36 -2.39 -0.01 2.58 16 25 H 0.01 0.48 5.45 -2.39 -0.01 0.47 16 26 H 0.11 3.80 4.47 -2.38 -0.01 3.79 16 27 H 0.05 2.01 7.57 -2.39 -0.02 1.99 16 28 H 0.02 0.93 7.59 -2.38 -0.02 0.91 16 29 H 0.06 1.57 7.79 -2.39 -0.02 1.55 16 30 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.34 9.56 7.59 -89.69 -0.68 8.88 16 36 H 0.01 0.58 7.55 -2.39 -0.02 0.56 16 37 H 0.03 1.72 6.06 -2.39 -0.01 1.70 16 38 H 0.07 3.79 5.77 -2.39 -0.01 3.78 16 39 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 Total: -1.00 -59.24 286.85 0.32 -58.92 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.34 Total: 18.99 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: 3.92 Total: -23.30 kcal Atomic # 7 Polarization: -94.82 SS G_CDS: -5.96 Total: -100.79 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -59.24 0.32 -58.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233518562.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.543 kcal (2) G-P(sol) polarization free energy of solvation -59.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds