Wall clock time and date at job start Mon Mar 30 2020 03:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 110.99813 * 2 1 4 4 C 1.52996 * 109.47256 * 293.94971 * 3 2 1 5 5 C 1.50702 * 109.47159 * 180.02562 * 4 3 2 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 3 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 C 1.46897 * 110.99718 * 123.95168 * 2 1 3 14 14 C 1.52998 * 109.47278 * 66.04594 * 13 2 1 15 15 H 1.09003 * 109.46509 * 294.98092 * 14 13 2 16 16 C 1.53037 * 109.46483 * 174.99567 * 14 13 2 17 17 C 1.53120 * 109.27790 * 180.80503 * 16 14 13 18 18 C 1.53117 * 109.16209 * 57.65724 * 17 16 14 19 19 C 1.53034 * 109.27660 * 302.34575 * 18 17 16 20 20 N 1.46846 * 109.52776 * 59.18152 * 19 18 17 21 21 H 1.09003 * 109.47125 * 59.99862 * 1 2 3 22 22 H 1.09000 * 109.47333 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47558 * 300.00476 * 1 2 3 24 24 H 1.09004 * 109.46774 * 173.95170 * 3 2 1 25 25 H 1.09000 * 109.47723 * 53.95558 * 3 2 1 26 26 H 1.09004 * 109.47066 * 60.00378 * 4 3 2 27 27 H 1.08994 * 109.47405 * 300.00209 * 4 3 2 28 28 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.47230 * 186.04392 * 13 2 1 30 30 H 1.08997 * 109.47645 * 306.04658 * 13 2 1 31 31 H 1.08994 * 109.50494 * 300.75113 * 16 14 13 32 32 H 1.09003 * 109.49752 * 60.86978 * 16 14 13 33 33 H 1.08996 * 109.52364 * 177.56179 * 17 16 14 34 34 H 1.09005 * 109.52213 * 297.75329 * 17 16 14 35 35 H 1.08996 * 109.50301 * 62.28356 * 18 17 16 36 36 H 1.08995 * 109.50474 * 182.40465 * 18 17 16 37 37 H 1.09011 * 109.46244 * 179.19306 * 19 18 17 38 38 H 1.09000 * 109.46378 * 299.17248 * 19 18 17 39 39 H 1.00891 * 111.00583 * 174.16606 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.1720 3.4641 -1.3185 6 1 2.7207 3.8320 -0.4640 7 6 1.9716 4.2795 -2.4122 8 7 1.3038 3.8314 -3.4528 9 14 2.6483 6.0206 -2.4156 10 1 4.0210 6.0171 -2.9820 11 1 1.7737 6.8900 -3.2429 12 1 2.6881 6.5390 -1.0246 13 6 1.9954 -0.7659 1.1376 14 6 1.6313 -2.2425 0.9704 15 1 0.5486 -2.3578 1.0218 16 6 2.2846 -3.0585 2.0882 17 6 1.9342 -4.5378 1.9053 18 6 2.4032 -4.9982 0.5224 19 6 1.7465 -4.1260 -0.5500 20 7 2.1129 -2.7208 -0.3319 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 3.0797 1.3444 0.1083 25 1 1.5611 1.9274 0.8309 26 1 0.5472 2.0844 -1.4265 27 1 2.0658 1.5015 -2.1491 28 1 1.1625 4.4052 -4.2221 29 1 3.0796 -0.6611 1.1757 30 1 1.5610 -0.3872 2.0628 31 1 3.3665 -2.9329 2.0459 32 1 1.9151 -2.7137 3.0540 33 1 2.4327 -5.1280 2.6741 34 1 0.8551 -4.6692 1.9864 35 1 3.4869 -4.9031 0.4554 36 1 2.1185 -6.0391 0.3694 37 1 2.0895 -4.4419 -1.5354 38 1 0.6633 -4.2320 -0.4913 39 1 1.7703 -2.1373 -1.0804 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234272070.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:41 Heat of formation + Delta-G solvation = -15.209338 kcal Electronic energy + Delta-G solvation = -16050.930587 eV Core-core repulsion = 13606.420516 eV Total energy + Delta-G solvation = -2444.510071 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.97149 -36.64289 -33.16784 -31.91810 -31.49408 -29.30117 -26.81288 -25.36301 -23.63020 -22.81811 -20.86345 -19.79130 -19.53622 -16.42983 -16.28691 -15.29284 -14.85554 -14.55852 -14.30002 -14.18553 -13.64903 -13.46186 -13.04284 -12.68226 -12.38766 -12.11248 -11.84345 -11.61032 -11.17567 -11.10353 -10.90442 -10.82146 -10.71001 -10.61964 -10.37353 -10.25838 -9.81416 -9.29656 -9.08924 -8.30361 -8.17757 -7.69097 -5.97061 -3.99059 3.34107 3.40097 3.43240 4.30505 4.41627 4.56449 4.83588 4.87465 5.01316 5.21534 5.38648 5.38984 5.42444 5.52920 5.66634 5.72445 5.78108 5.83858 5.87125 5.91820 5.97361 6.04508 6.09990 6.23782 6.30799 6.39536 6.46624 6.55543 7.00945 7.28902 7.52234 7.60952 7.74636 7.83111 7.93869 8.11534 8.46947 9.08244 9.64382 11.14378 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.056688 B = 0.004763 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.810105 B = 5876.911728 C = 6014.346313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.539 5.539 3 C 0.065 3.935 4 C 0.028 3.972 5 C -0.521 4.521 6 H 0.053 0.947 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.059 3.941 14 C 0.095 3.905 15 H 0.032 0.968 16 C -0.113 4.113 17 C -0.119 4.119 18 C -0.117 4.117 19 C 0.057 3.943 20 N -0.678 5.678 21 H 0.078 0.922 22 H 0.051 0.949 23 H 0.017 0.983 24 H 0.061 0.939 25 H 0.018 0.982 26 H 0.016 0.984 27 H 0.025 0.975 28 H 0.260 0.740 29 H 0.078 0.922 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.022 0.978 39 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.420 -15.314 9.221 17.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.263 5.263 3 C -0.062 4.062 4 C -0.009 4.009 5 C -0.560 4.560 6 H 0.071 0.929 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.200 1.200 13 C -0.070 4.070 14 C -0.015 4.015 15 H 0.050 0.950 16 C -0.152 4.152 17 C -0.157 4.157 18 C -0.155 4.155 19 C -0.073 4.073 20 N -0.313 5.313 21 H 0.097 0.903 22 H 0.070 0.930 23 H 0.036 0.964 24 H 0.079 0.921 25 H 0.036 0.964 26 H 0.034 0.966 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.047 0.953 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.040 0.960 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.294 -15.619 8.839 17.949 hybrid contribution -0.942 1.482 0.500 1.825 sum -0.648 -14.138 9.338 16.956 Atomic orbital electron populations 1.22427 0.88604 1.00183 1.01333 1.62023 1.07024 1.16161 1.41127 1.22332 0.98598 0.84993 1.00278 1.19088 0.96795 0.94010 0.91022 1.21207 1.35055 0.97947 1.01805 0.92853 1.24986 0.95309 0.98423 0.95569 1.69974 1.40886 1.36482 1.05957 0.86604 0.78906 0.84605 0.77927 1.20628 1.21266 1.19963 1.22182 1.00802 0.92089 0.91943 1.21436 0.96030 0.93848 0.90212 0.95022 1.21613 1.01649 0.94495 0.97409 1.21549 1.00558 0.96339 0.97227 1.21587 1.01347 0.98066 0.94515 1.21888 0.96859 0.89751 0.98761 1.60182 1.64296 1.02302 1.04472 0.90348 0.93024 0.96398 0.92058 0.96380 0.96582 0.95661 0.93046 0.90376 0.95334 0.91050 0.92065 0.92147 0.92623 0.91216 0.92193 0.91066 0.95965 0.81693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.12 60.06 0.55 0.94 16 2 N -0.54 -9.76 3.79 -242.93 -0.92 -10.69 16 3 C 0.06 1.39 4.90 -3.83 -0.02 1.37 16 4 C 0.03 0.74 4.90 -27.88 -0.14 0.60 16 5 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 6 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 9 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.06 0.89 4.65 -3.83 -0.02 0.88 16 14 C 0.10 1.27 2.26 -67.72 -0.15 1.11 16 15 H 0.03 0.44 6.71 -51.93 -0.35 0.09 16 16 C -0.11 -1.28 5.37 -26.65 -0.14 -1.42 16 17 C -0.12 -1.18 6.00 -26.61 -0.16 -1.34 16 18 C -0.12 -1.19 6.09 -26.65 -0.16 -1.35 16 19 C 0.06 0.66 6.55 -3.84 -0.03 0.64 16 20 N -0.68 -9.46 6.50 -106.75 -0.69 -10.15 16 21 H 0.08 1.47 6.47 -51.93 -0.34 1.13 16 22 H 0.05 0.76 6.41 -51.93 -0.33 0.43 16 23 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.06 1.31 7.93 -51.93 -0.41 0.90 16 25 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16 26 H 0.02 0.44 6.55 -51.93 -0.34 0.10 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.08 1.23 7.93 -51.93 -0.41 0.82 16 30 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 38 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 39 H 0.36 5.60 7.90 -39.30 -0.31 5.29 16 LS Contribution 302.47 15.07 4.56 4.56 Total: -1.00 -29.48 302.47 -9.13 -38.61 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -7.10 Total: -0.59 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -0.68 Total: -12.22 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.88 Total: -47.17 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.48 -9.13 -38.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234272070.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.398 kcal (2) G-P(sol) polarization free energy of solvation -29.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds