Wall clock time and date at job start Mon Mar 30 2020 03:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 110.99813 * 2 1 4 4 C 1.52996 * 109.47256 * 293.94971 * 3 2 1 5 5 C 1.50702 * 109.47159 * 180.02562 * 4 3 2 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 3 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 C 1.46897 * 110.99718 * 123.95168 * 2 1 3 14 14 C 1.52998 * 109.47278 * 66.04594 * 13 2 1 15 15 H 1.09003 * 109.46509 * 294.98092 * 14 13 2 16 16 C 1.53037 * 109.46483 * 174.99567 * 14 13 2 17 17 C 1.53120 * 109.27790 * 180.80503 * 16 14 13 18 18 C 1.53117 * 109.16209 * 57.65724 * 17 16 14 19 19 C 1.53034 * 109.27660 * 302.34575 * 18 17 16 20 20 N 1.46846 * 109.52776 * 59.18152 * 19 18 17 21 21 H 1.09003 * 109.47125 * 59.99862 * 1 2 3 22 22 H 1.09000 * 109.47333 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47558 * 300.00476 * 1 2 3 24 24 H 1.09004 * 109.46774 * 173.95170 * 3 2 1 25 25 H 1.09000 * 109.47723 * 53.95558 * 3 2 1 26 26 H 1.09004 * 109.47066 * 60.00378 * 4 3 2 27 27 H 1.08994 * 109.47405 * 300.00209 * 4 3 2 28 28 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.47230 * 186.04392 * 13 2 1 30 30 H 1.08997 * 109.47645 * 306.04658 * 13 2 1 31 31 H 1.08994 * 109.50494 * 300.75113 * 16 14 13 32 32 H 1.09003 * 109.49752 * 60.86978 * 16 14 13 33 33 H 1.08996 * 109.52364 * 177.56179 * 17 16 14 34 34 H 1.09005 * 109.52213 * 297.75329 * 17 16 14 35 35 H 1.08996 * 109.50301 * 62.28356 * 18 17 16 36 36 H 1.08995 * 109.50474 * 182.40465 * 18 17 16 37 37 H 1.09011 * 109.46244 * 179.19306 * 19 18 17 38 38 H 1.09000 * 109.46378 * 299.17248 * 19 18 17 39 39 H 1.00891 * 111.00583 * 174.16606 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.1720 3.4641 -1.3185 6 1 2.7207 3.8320 -0.4640 7 6 1.9716 4.2795 -2.4122 8 7 1.3038 3.8314 -3.4528 9 14 2.6483 6.0206 -2.4156 10 1 4.0210 6.0171 -2.9820 11 1 1.7737 6.8900 -3.2429 12 1 2.6881 6.5390 -1.0246 13 6 1.9954 -0.7659 1.1376 14 6 1.6313 -2.2425 0.9704 15 1 0.5486 -2.3578 1.0218 16 6 2.2846 -3.0585 2.0882 17 6 1.9342 -4.5378 1.9053 18 6 2.4032 -4.9982 0.5224 19 6 1.7465 -4.1260 -0.5500 20 7 2.1129 -2.7208 -0.3319 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 3.0797 1.3444 0.1083 25 1 1.5611 1.9274 0.8309 26 1 0.5472 2.0844 -1.4265 27 1 2.0658 1.5015 -2.1491 28 1 1.1625 4.4052 -4.2221 29 1 3.0796 -0.6611 1.1757 30 1 1.5610 -0.3872 2.0628 31 1 3.3665 -2.9329 2.0459 32 1 1.9151 -2.7137 3.0540 33 1 2.4327 -5.1280 2.6741 34 1 0.8551 -4.6692 1.9864 35 1 3.4869 -4.9031 0.4554 36 1 2.1185 -6.0391 0.3694 37 1 2.0895 -4.4419 -1.5354 38 1 0.6633 -4.2320 -0.4913 39 1 1.7703 -2.1373 -1.0804 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234272070.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:41 Heat of formation + Delta-G solvation = -34.654027 kcal Electronic energy + Delta-G solvation = -16051.773771 eV Core-core repulsion = 13606.420516 eV Total energy + Delta-G solvation = -2445.353256 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.06552 -38.02337 -35.20203 -33.08444 -32.61012 -31.06709 -28.12678 -27.09586 -24.96253 -24.03817 -22.18202 -21.41209 -20.48445 -18.56813 -17.33080 -16.59571 -16.53461 -16.21867 -15.60302 -15.35452 -14.82391 -14.57450 -14.25360 -14.17224 -13.86984 -13.55055 -13.26073 -12.92453 -12.85517 -12.63831 -12.56416 -12.40453 -11.85050 -11.78787 -11.63326 -11.58166 -11.27507 -11.22182 -10.96200 -10.52708 -9.28585 -9.10997 -8.18960 -6.29954 1.40794 1.42453 1.53211 2.41185 3.05056 3.14605 3.35755 3.90999 3.99257 4.09924 4.21092 4.27399 4.36537 4.43696 4.50457 4.57798 4.61670 4.73407 4.77111 4.85221 4.87218 4.96779 5.03095 5.07585 5.11159 5.13413 5.25494 5.33226 5.47130 5.51905 5.68362 5.79809 6.10447 6.21169 6.34124 6.39235 6.59244 6.87215 7.38969 8.93151 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.056688 B = 0.004763 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.810105 B = 5876.911728 C = 6014.346313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.547 5.547 3 C 0.081 3.919 4 C 0.037 3.963 5 C -0.545 4.545 6 H 0.058 0.942 7 C 0.002 3.998 8 N -0.931 5.931 9 Si 0.966 3.034 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.263 1.263 13 C 0.061 3.939 14 C 0.100 3.900 15 H 0.032 0.968 16 C -0.111 4.111 17 C -0.117 4.117 18 C -0.115 4.115 19 C 0.054 3.946 20 N -0.691 5.691 21 H 0.052 0.948 22 H 0.076 0.924 23 H 0.023 0.977 24 H 0.060 0.940 25 H 0.019 0.981 26 H -0.005 1.005 27 H -0.007 1.007 28 H 0.263 0.737 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.025 0.975 39 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.081 -15.821 10.647 19.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.271 5.271 3 C -0.046 4.046 4 C 0.000 4.000 5 C -0.584 4.584 6 H 0.077 0.923 7 C -0.196 4.196 8 N -0.571 5.571 9 Si 0.790 3.210 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.188 1.188 13 C -0.067 4.067 14 C -0.010 4.010 15 H 0.050 0.950 16 C -0.149 4.149 17 C -0.154 4.154 18 C -0.153 4.153 19 C -0.075 4.075 20 N -0.325 5.325 21 H 0.070 0.930 22 H 0.094 0.906 23 H 0.042 0.958 24 H 0.079 0.921 25 H 0.037 0.963 26 H 0.013 0.987 27 H 0.011 0.989 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.043 0.957 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.637 -16.154 10.289 19.163 hybrid contribution -1.067 1.579 0.036 1.907 sum -0.430 -14.574 10.324 17.866 Atomic orbital electron populations 1.22357 0.87816 1.01440 1.00281 1.61913 1.07781 1.14250 1.43155 1.21959 0.98586 0.86677 0.97391 1.18905 0.95010 0.93577 0.92502 1.21641 1.35335 0.99170 1.02233 0.92333 1.25943 0.95414 1.03176 0.95024 1.70110 1.42009 1.38322 1.06691 0.85444 0.78303 0.78790 0.78472 1.19769 1.20689 1.18772 1.22230 1.00328 0.93035 0.91079 1.21427 0.96179 0.92668 0.90774 0.95019 1.21609 1.01036 0.95253 0.97022 1.21551 1.01020 0.95378 0.97466 1.21586 1.00719 0.98782 0.94165 1.21987 0.97194 0.88636 0.99669 1.60235 1.64633 1.03341 1.04297 0.92955 0.90568 0.95802 0.92122 0.96314 0.98663 0.98891 0.92788 0.90990 0.94285 0.91712 0.90768 0.90453 0.92179 0.91940 0.90277 0.90839 0.95720 0.83173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 9.12 127.69 1.16 2.15 16 2 N -0.55 -19.81 3.79 -922.49 -3.50 -23.31 16 3 C 0.08 3.53 4.90 86.30 0.42 3.95 16 4 C 0.04 2.04 4.90 29.85 0.15 2.18 16 5 C -0.55 -31.65 9.11 25.60 0.23 -31.42 16 6 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 7 C 0.00 0.14 5.46 84.66 0.46 0.60 16 8 N -0.93 -57.46 13.29 21.45 0.28 -57.17 16 9 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 13 C 0.06 1.80 4.65 86.30 0.40 2.21 16 14 C 0.10 2.50 2.26 44.94 0.10 2.60 16 15 H 0.03 0.80 6.71 -2.39 -0.02 0.79 16 16 C -0.11 -2.24 5.37 30.65 0.16 -2.08 16 17 C -0.12 -1.98 6.00 30.67 0.18 -1.79 16 18 C -0.11 -2.06 6.09 30.64 0.19 -1.88 16 19 C 0.05 1.19 6.55 86.32 0.57 1.75 16 20 N -0.69 -18.77 6.50 -491.65 -3.20 -21.97 16 21 H 0.05 2.02 6.47 -2.39 -0.02 2.01 16 22 H 0.08 2.17 6.41 -2.39 -0.02 2.15 16 23 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.06 2.61 7.93 -2.38 -0.02 2.59 16 25 H 0.02 0.80 8.12 -2.39 -0.02 0.78 16 26 H 0.00 -0.28 6.55 -2.38 -0.02 -0.30 16 27 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 28 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 29 H 0.07 2.21 7.93 -2.39 -0.02 2.19 16 30 H 0.04 1.08 8.12 -2.39 -0.02 1.06 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.35 10.83 7.90 -89.70 -0.71 10.12 16 Total: -1.00 -63.36 302.47 -0.07 -63.42 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.29 Total: 13.97 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 4.03 Total: -21.73 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -6.41 Total: -102.45 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -63.36 -0.07 -63.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234272070.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.767 kcal (2) G-P(sol) polarization free energy of solvation -63.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds