Wall clock time and date at job start Mon Mar 30 2020 03:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 111.00233 * 2 1 4 4 C 1.52998 * 109.46633 * 293.95166 * 3 2 1 5 5 C 1.50708 * 109.47223 * 179.97438 * 4 3 2 6 6 H 1.08001 * 119.99147 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00077 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00116 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99917 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47109 * 89.99651 * 9 7 5 11 11 H 1.48501 * 109.46910 * 210.00222 * 9 7 5 12 12 H 1.48504 * 109.46883 * 329.99829 * 9 7 5 13 13 C 1.46900 * 110.99673 * 123.94933 * 2 1 3 14 14 C 1.53004 * 109.47129 * 164.11057 * 13 2 1 15 15 H 1.08998 * 109.45837 * 64.41874 * 14 13 2 16 16 C 1.53039 * 109.46205 * 184.38274 * 14 13 2 17 17 C 1.53123 * 109.27393 * 179.19458 * 16 14 13 18 18 C 1.53113 * 109.16334 * 302.34646 * 17 16 14 19 19 C 1.53041 * 109.28066 * 57.65637 * 18 17 16 20 20 N 1.46847 * 109.52231 * 300.82264 * 19 18 17 21 21 H 1.09001 * 109.47062 * 65.88553 * 1 2 3 22 22 H 1.09002 * 109.47384 * 305.88378 * 1 2 3 23 23 H 1.08997 * 109.47115 * 185.88380 * 1 2 3 24 24 H 1.09002 * 109.47333 * 53.94524 * 3 2 1 25 25 H 1.08998 * 109.47345 * 173.95615 * 3 2 1 26 26 H 1.08996 * 109.47386 * 299.99653 * 4 3 2 27 27 H 1.09003 * 109.47362 * 60.00181 * 4 3 2 28 28 H 0.97001 * 120.00025 * 179.97438 * 8 7 5 29 29 H 1.08996 * 109.47570 * 284.11240 * 13 2 1 30 30 H 1.08998 * 109.47295 * 44.11224 * 13 2 1 31 31 H 1.08991 * 109.50650 * 299.13274 * 16 14 13 32 32 H 1.08999 * 109.50335 * 59.26215 * 16 14 13 33 33 H 1.08998 * 109.52138 * 182.44208 * 17 16 14 34 34 H 1.08999 * 109.57162 * 62.28582 * 17 16 14 35 35 H 1.08997 * 109.50726 * 297.71514 * 18 17 16 36 36 H 1.09007 * 109.50652 * 177.59659 * 18 17 16 37 37 H 1.09000 * 109.46537 * 180.80328 * 19 18 17 38 38 H 1.08996 * 109.45143 * 60.82753 * 19 18 17 39 39 H 1.00895 * 111.00379 * 185.84004 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0573 -1.3183 5 6 2.1711 3.4645 -1.3182 6 1 2.7191 3.8325 -0.4634 7 6 1.9659 4.2815 -2.4096 8 7 1.2990 3.8331 -3.4506 9 14 2.6353 6.0255 -2.4097 10 1 4.0074 6.0290 -2.9775 11 1 1.7561 6.8931 -3.2340 12 1 2.6745 6.5407 -1.0175 13 6 1.9954 -0.7659 1.1377 14 6 3.4734 -1.0818 0.8997 15 1 4.0440 -0.1534 0.8768 16 6 3.9932 -1.9717 2.0311 17 6 5.4669 -2.3016 1.7782 18 6 5.6022 -2.9851 0.4148 19 6 5.0357 -2.0659 -0.6698 20 7 3.6240 -1.7805 -0.3831 21 1 -0.3633 0.4199 -0.9380 22 1 -0.3634 0.6024 0.8326 23 1 -0.3633 -1.0222 0.1053 24 1 1.5611 1.9274 0.8308 25 1 3.0798 1.3444 0.1082 26 1 2.0659 1.5014 -2.1492 27 1 0.5472 2.0844 -1.4266 28 1 1.1543 4.4081 -4.2183 29 1 1.8917 -0.1788 2.0501 30 1 1.4367 -1.6964 1.2389 31 1 3.8958 -1.4466 2.9812 32 1 3.4141 -2.8946 2.0635 33 1 5.8295 -2.9706 2.5586 34 1 6.0532 -1.3827 1.7848 35 1 5.0484 -3.9239 0.4217 36 1 6.6542 -3.1841 0.2101 37 1 5.1175 -2.5556 -1.6401 38 1 5.5989 -1.1328 -0.6852 39 1 3.2019 -1.2543 -1.1333 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234272152.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:44 Heat of formation + Delta-G solvation = -16.505870 kcal Electronic energy + Delta-G solvation = -16243.308587 eV Core-core repulsion = 13798.742295 eV Total energy + Delta-G solvation = -2444.566293 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.86218 -36.61427 -33.11975 -31.83309 -31.40348 -29.52758 -26.63126 -25.27559 -23.54383 -22.61662 -21.15774 -19.90379 -19.25461 -16.47467 -16.16579 -15.11265 -14.84147 -14.45914 -14.39733 -13.89021 -13.73989 -13.44134 -12.95022 -12.60906 -12.36752 -12.10351 -11.70694 -11.63318 -11.23692 -11.10701 -10.96822 -10.77196 -10.72437 -10.52859 -10.27746 -10.13879 -9.80191 -9.35080 -9.11978 -8.33736 -8.07912 -7.68034 -5.99897 -4.02369 3.31273 3.37529 3.40602 4.36259 4.47381 4.55902 4.93118 4.97189 5.10088 5.31067 5.35970 5.48037 5.55867 5.65330 5.72871 5.79376 5.84705 5.94884 5.96768 6.00661 6.01823 6.08363 6.18938 6.27590 6.32486 6.45766 6.48533 6.53823 6.98090 7.38004 7.53395 7.60401 7.79533 7.86876 7.90062 8.08249 8.43684 9.04904 9.61352 11.11386 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.030661 B = 0.006038 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.993473 B = 4636.098609 C = 5035.970022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.542 5.542 3 C 0.060 3.940 4 C 0.029 3.971 5 C -0.523 4.523 6 H 0.052 0.948 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.060 3.940 14 C 0.094 3.906 15 H 0.037 0.963 16 C -0.111 4.111 17 C -0.120 4.120 18 C -0.116 4.116 19 C 0.056 3.944 20 N -0.678 5.678 21 H 0.076 0.924 22 H 0.017 0.983 23 H 0.055 0.945 24 H 0.019 0.981 25 H 0.057 0.943 26 H 0.023 0.977 27 H 0.017 0.983 28 H 0.260 0.740 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.026 0.974 39 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.864 -11.939 8.987 15.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.266 5.266 3 C -0.067 4.067 4 C -0.008 4.008 5 C -0.561 4.561 6 H 0.070 0.930 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.200 1.200 13 C -0.069 4.069 14 C -0.016 4.016 15 H 0.055 0.945 16 C -0.150 4.150 17 C -0.157 4.157 18 C -0.154 4.154 19 C -0.074 4.074 20 N -0.313 5.313 21 H 0.094 0.906 22 H 0.036 0.964 23 H 0.074 0.926 24 H 0.037 0.963 25 H 0.075 0.925 26 H 0.041 0.959 27 H 0.036 0.964 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.044 0.956 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.820 -12.720 8.641 16.115 hybrid contribution 0.419 2.369 0.438 2.445 sum 5.239 -10.352 9.078 14.732 Atomic orbital electron populations 1.22318 0.87773 1.00118 1.01491 1.62000 1.07688 1.15666 1.41206 1.22417 0.98381 0.85499 1.00403 1.19076 0.96981 0.93952 0.90840 1.21196 1.35158 0.97913 1.01876 0.92955 1.24980 0.95275 0.98397 0.95577 1.69971 1.40759 1.36435 1.06010 0.86618 0.78867 0.84690 0.77958 1.20666 1.21181 1.19962 1.22152 0.94934 0.97761 0.92028 1.21411 0.95348 0.94513 0.90367 0.94490 1.21597 0.95900 1.00123 0.97363 1.21549 0.96683 1.00275 0.97235 1.21581 0.99894 0.99228 0.94682 1.21883 0.89456 0.97834 0.98232 1.60249 1.14133 1.51751 1.05173 0.90573 0.96404 0.92590 0.96314 0.92474 0.95858 0.96423 0.92999 0.95225 0.90932 0.92133 0.91333 0.92261 0.92438 0.91429 0.92223 0.91150 0.95557 0.81604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.24 60.07 0.55 1.08 16 2 N -0.54 -9.80 3.77 -242.92 -0.92 -10.71 16 3 C 0.06 1.27 4.75 -3.83 -0.02 1.25 16 4 C 0.03 0.75 4.89 -27.88 -0.14 0.62 16 5 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 6 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.06 0.92 4.67 -3.82 -0.02 0.90 16 14 C 0.09 1.38 2.43 -67.72 -0.16 1.21 16 15 H 0.04 0.61 6.76 -51.93 -0.35 0.26 16 16 C -0.11 -1.34 5.37 -26.65 -0.14 -1.48 16 17 C -0.12 -1.32 6.00 -26.61 -0.16 -1.48 16 18 C -0.12 -1.29 6.09 -26.65 -0.16 -1.46 16 19 C 0.06 0.73 6.55 -3.83 -0.03 0.71 16 20 N -0.68 -10.18 6.50 -106.76 -0.69 -10.87 16 21 H 0.08 1.42 6.76 -51.93 -0.35 1.07 16 22 H 0.02 0.29 8.06 -51.93 -0.42 -0.13 16 23 H 0.06 0.81 7.87 -51.93 -0.41 0.40 16 24 H 0.02 0.40 8.06 -51.93 -0.42 -0.01 16 25 H 0.06 1.22 6.48 -51.93 -0.34 0.88 16 26 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.02 0.48 6.68 -51.93 -0.35 0.14 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.03 0.45 8.05 -51.93 -0.42 0.03 16 30 H 0.07 1.04 7.81 -51.93 -0.41 0.64 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.36 6.16 7.92 -39.29 -0.31 5.85 16 LS Contribution 302.77 15.07 4.56 4.56 Total: -1.00 -29.25 302.77 -9.13 -38.38 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -7.11 Total: 0.32 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -0.68 Total: -12.24 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -0.87 Total: -47.77 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.25 -9.13 -38.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234272152.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.877 kcal (2) G-P(sol) polarization free energy of solvation -29.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds