Wall clock time and date at job start Mon Mar 30 2020 03:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 111.00233 * 2 1 4 4 C 1.52998 * 109.46633 * 293.95166 * 3 2 1 5 5 C 1.50708 * 109.47223 * 179.97438 * 4 3 2 6 6 H 1.08001 * 119.99147 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00077 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00116 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99917 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47109 * 89.99651 * 9 7 5 11 11 H 1.48501 * 109.46910 * 210.00222 * 9 7 5 12 12 H 1.48504 * 109.46883 * 329.99829 * 9 7 5 13 13 C 1.46900 * 110.99673 * 123.94933 * 2 1 3 14 14 C 1.53004 * 109.47129 * 164.11057 * 13 2 1 15 15 H 1.08998 * 109.45837 * 64.41874 * 14 13 2 16 16 C 1.53039 * 109.46205 * 184.38274 * 14 13 2 17 17 C 1.53123 * 109.27393 * 179.19458 * 16 14 13 18 18 C 1.53113 * 109.16334 * 302.34646 * 17 16 14 19 19 C 1.53041 * 109.28066 * 57.65637 * 18 17 16 20 20 N 1.46847 * 109.52231 * 300.82264 * 19 18 17 21 21 H 1.09001 * 109.47062 * 65.88553 * 1 2 3 22 22 H 1.09002 * 109.47384 * 305.88378 * 1 2 3 23 23 H 1.08997 * 109.47115 * 185.88380 * 1 2 3 24 24 H 1.09002 * 109.47333 * 53.94524 * 3 2 1 25 25 H 1.08998 * 109.47345 * 173.95615 * 3 2 1 26 26 H 1.08996 * 109.47386 * 299.99653 * 4 3 2 27 27 H 1.09003 * 109.47362 * 60.00181 * 4 3 2 28 28 H 0.97001 * 120.00025 * 179.97438 * 8 7 5 29 29 H 1.08996 * 109.47570 * 284.11240 * 13 2 1 30 30 H 1.08998 * 109.47295 * 44.11224 * 13 2 1 31 31 H 1.08991 * 109.50650 * 299.13274 * 16 14 13 32 32 H 1.08999 * 109.50335 * 59.26215 * 16 14 13 33 33 H 1.08998 * 109.52138 * 182.44208 * 17 16 14 34 34 H 1.08999 * 109.57162 * 62.28582 * 17 16 14 35 35 H 1.08997 * 109.50726 * 297.71514 * 18 17 16 36 36 H 1.09007 * 109.50652 * 177.59659 * 18 17 16 37 37 H 1.09000 * 109.46537 * 180.80328 * 19 18 17 38 38 H 1.08996 * 109.45143 * 60.82753 * 19 18 17 39 39 H 1.00895 * 111.00379 * 185.84004 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0573 -1.3183 5 6 2.1711 3.4645 -1.3182 6 1 2.7191 3.8325 -0.4634 7 6 1.9659 4.2815 -2.4096 8 7 1.2990 3.8331 -3.4506 9 14 2.6353 6.0255 -2.4097 10 1 4.0074 6.0290 -2.9775 11 1 1.7561 6.8931 -3.2340 12 1 2.6745 6.5407 -1.0175 13 6 1.9954 -0.7659 1.1377 14 6 3.4734 -1.0818 0.8997 15 1 4.0440 -0.1534 0.8768 16 6 3.9932 -1.9717 2.0311 17 6 5.4669 -2.3016 1.7782 18 6 5.6022 -2.9851 0.4148 19 6 5.0357 -2.0659 -0.6698 20 7 3.6240 -1.7805 -0.3831 21 1 -0.3633 0.4199 -0.9380 22 1 -0.3634 0.6024 0.8326 23 1 -0.3633 -1.0222 0.1053 24 1 1.5611 1.9274 0.8308 25 1 3.0798 1.3444 0.1082 26 1 2.0659 1.5014 -2.1492 27 1 0.5472 2.0844 -1.4266 28 1 1.1543 4.4081 -4.2183 29 1 1.8917 -0.1788 2.0501 30 1 1.4367 -1.6964 1.2389 31 1 3.8958 -1.4466 2.9812 32 1 3.4141 -2.8946 2.0635 33 1 5.8295 -2.9706 2.5586 34 1 6.0532 -1.3827 1.7848 35 1 5.0484 -3.9239 0.4217 36 1 6.6542 -3.1841 0.2101 37 1 5.1175 -2.5556 -1.6401 38 1 5.5989 -1.1328 -0.6852 39 1 3.2019 -1.2543 -1.1333 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234272152.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:43 Heat of formation + Delta-G solvation = -35.753504 kcal Electronic energy + Delta-G solvation = -16244.143227 eV Core-core repulsion = 13798.742295 eV Total energy + Delta-G solvation = -2445.400933 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.03853 -38.01429 -35.19933 -32.98361 -32.59229 -31.36558 -27.90297 -27.12471 -24.85884 -23.93263 -22.61771 -21.32495 -20.42528 -18.57593 -17.36356 -16.65632 -16.42999 -16.03874 -15.67929 -15.27711 -15.02067 -14.55995 -14.23940 -14.08173 -13.85047 -13.59188 -13.32165 -12.92869 -12.83931 -12.68850 -12.57512 -12.39191 -12.03973 -11.68831 -11.63874 -11.46012 -11.26309 -11.20819 -11.05993 -10.55564 -9.32031 -9.11314 -8.21485 -6.32888 1.38200 1.39526 1.50493 2.38495 3.06673 3.11825 3.36768 3.92245 3.98825 4.10340 4.21509 4.27910 4.40040 4.44586 4.51471 4.60423 4.63447 4.71321 4.81122 4.85412 4.87308 4.97693 5.04912 5.07697 5.12277 5.13184 5.24653 5.31671 5.44460 5.51553 5.65249 5.77805 6.08827 6.20536 6.32994 6.37634 6.55950 6.84143 7.36206 8.90461 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.030661 B = 0.006038 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.993473 B = 4636.098609 C = 5035.970022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.549 5.549 3 C 0.081 3.919 4 C 0.039 3.961 5 C -0.546 4.546 6 H 0.056 0.944 7 C 0.004 3.996 8 N -0.930 5.930 9 Si 0.964 3.036 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.264 1.264 13 C 0.064 3.936 14 C 0.094 3.906 15 H 0.013 0.987 16 C -0.106 4.106 17 C -0.119 4.119 18 C -0.111 4.111 19 C 0.051 3.949 20 N -0.681 5.681 21 H 0.050 0.950 22 H 0.022 0.978 23 H 0.085 0.915 24 H 0.016 0.984 25 H 0.054 0.946 26 H -0.007 1.007 27 H -0.005 1.005 28 H 0.264 0.736 29 H 0.037 0.963 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.012 0.988 39 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.689 -12.413 10.473 17.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.273 5.273 3 C -0.047 4.047 4 C 0.001 3.999 5 C -0.585 4.585 6 H 0.074 0.926 7 C -0.194 4.194 8 N -0.569 5.569 9 Si 0.788 3.212 10 H -0.198 1.198 11 H -0.205 1.205 12 H -0.189 1.189 13 C -0.064 4.064 14 C -0.017 4.017 15 H 0.031 0.969 16 C -0.145 4.145 17 C -0.157 4.157 18 C -0.149 4.149 19 C -0.079 4.079 20 N -0.314 5.314 21 H 0.069 0.931 22 H 0.040 0.960 23 H 0.104 0.896 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.011 0.989 27 H 0.014 0.986 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.030 0.970 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.654 -13.217 10.151 17.598 hybrid contribution 0.139 2.460 -0.051 2.465 sum 5.793 -10.756 10.100 15.851 Atomic orbital electron populations 1.22304 0.87019 1.01834 1.00289 1.61905 1.08452 1.13746 1.43225 1.21996 0.98230 0.87085 0.97377 1.18888 0.95100 0.93508 0.92391 1.21612 1.35445 0.99171 1.02252 0.92607 1.25923 0.95362 1.03118 0.95028 1.70103 1.41847 1.38264 1.06733 0.85471 0.78330 0.78914 0.78471 1.19780 1.20537 1.18861 1.22220 0.95422 0.97853 0.90954 1.21466 0.94698 0.94233 0.91298 0.96916 1.21578 0.96566 0.99790 0.96529 1.21570 0.95887 1.00475 0.97775 1.21563 1.00800 0.98581 0.93911 1.22006 0.88395 0.97801 0.99650 1.60341 1.15137 1.51102 1.04818 0.93129 0.95964 0.89640 0.96577 0.92711 0.98881 0.98625 0.92721 0.94525 0.89263 0.90963 0.90689 0.90020 0.93115 0.91099 0.90508 0.90632 0.96986 0.83438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.13 9.24 127.69 1.18 2.31 16 2 N -0.55 -19.83 3.77 -922.45 -3.48 -23.31 16 3 C 0.08 3.49 4.75 86.30 0.41 3.90 16 4 C 0.04 2.09 4.89 29.85 0.15 2.23 16 5 C -0.55 -31.70 9.11 25.60 0.23 -31.47 16 6 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 7 C 0.00 0.23 5.46 84.65 0.46 0.69 16 8 N -0.93 -57.19 13.29 21.45 0.28 -56.90 16 9 Si 0.96 44.71 29.54 68.60 2.03 46.73 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 13 C 0.06 1.84 4.67 86.30 0.40 2.25 16 14 C 0.09 2.65 2.43 44.94 0.11 2.76 16 15 H 0.01 0.43 6.76 -2.39 -0.02 0.41 16 16 C -0.11 -2.31 5.37 30.65 0.16 -2.14 16 17 C -0.12 -2.34 6.00 30.67 0.18 -2.15 16 18 C -0.11 -2.24 6.09 30.65 0.19 -2.05 16 19 C 0.05 1.31 6.55 86.33 0.57 1.88 16 20 N -0.68 -20.16 6.50 -491.67 -3.20 -23.35 16 21 H 0.05 1.94 6.76 -2.39 -0.02 1.92 16 22 H 0.02 0.71 8.06 -2.39 -0.02 0.69 16 23 H 0.08 2.34 7.87 -2.39 -0.02 2.32 16 24 H 0.02 0.70 8.06 -2.39 -0.02 0.68 16 25 H 0.05 2.38 6.48 -2.39 -0.02 2.36 16 26 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 27 H 0.00 -0.26 6.68 -2.39 -0.02 -0.28 16 28 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 29 H 0.04 1.03 8.05 -2.39 -0.02 1.01 16 30 H 0.09 2.33 7.81 -2.39 -0.02 2.31 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.35 12.00 7.92 -89.70 -0.71 11.29 16 Total: -1.00 -63.22 302.77 -0.04 -63.26 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.28 Total: 15.37 kcal Atomic # 6 Polarization: -25.84 SS G_CDS: 4.04 Total: -21.80 kcal Atomic # 7 Polarization: -97.17 SS G_CDS: -6.39 Total: -103.56 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -63.22 -0.04 -63.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234272152.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.504 kcal (2) G-P(sol) polarization free energy of solvation -63.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds