Wall clock time and date at job start Mon Mar 30 2020 03:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30507 * 1 3 3 Si 1.86801 * 120.00247 * 2 1 4 4 H 1.48498 * 109.47191 * 274.98649 * 3 2 1 5 5 H 1.48498 * 109.47288 * 34.98635 * 3 2 1 6 6 H 1.48495 * 109.47121 * 154.98895 * 3 2 1 7 7 C 1.40373 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99808 * 186.22961 * 7 2 1 9 9 C 1.41473 * 119.99691 * 6.22684 * 7 2 1 10 10 O 1.22044 * 120.00248 * 353.66052 * 9 7 2 11 11 C 1.46532 * 119.99811 * 173.66272 * 9 7 2 12 12 C 1.37519 * 125.47217 * 179.97438 * 11 9 7 13 13 C 1.37017 * 113.23386 * 180.02562 * 12 11 9 14 14 C 1.34425 * 115.11954 * 359.97438 * 13 12 11 15 15 N 1.48027 * 124.50153 * 179.97438 * 14 13 12 16 16 O 1.21800 * 119.99802 * 0.02562 * 15 14 13 17 17 O 1.21800 * 119.99872 * 179.72355 * 15 14 13 18 18 S 1.70609 * 111.00001 * 0.24501 * 14 13 12 19 19 H 0.97008 * 119.99686 * 359.97438 * 1 2 3 20 20 H 1.08006 * 123.38698 * 0.03122 * 12 11 9 21 21 H 1.08004 * 122.44006 * 180.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 2.3813 2.1072 -1.3948 5 1 1.4933 2.6200 0.8028 6 1 3.5854 1.4119 0.5919 7 6 2.0069 -1.2157 -0.0005 8 1 3.0821 -1.2184 0.1009 9 6 1.3058 -2.4371 -0.1340 10 8 0.0853 -2.4436 -0.1323 11 6 2.0449 -3.6946 -0.2742 12 6 1.4803 -4.9412 -0.4102 13 6 2.4065 -5.9447 -0.5223 14 6 3.6892 -5.5445 -0.4814 15 7 4.8542 -6.4520 -0.5830 16 8 4.6828 -7.6508 -0.7140 17 8 5.9842 -5.9994 -0.5411 18 16 3.7960 -3.8527 -0.2892 19 1 -0.4850 0.8401 0.0004 20 1 0.4140 -5.1121 -0.4270 21 1 2.1264 -6.9815 -0.6362 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236383064.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:33 Heat of formation + Delta-G solvation = -36.264767 kcal Electronic energy + Delta-G solvation = -12699.146229 eV Core-core repulsion = 10055.424957 eV Total energy + Delta-G solvation = -2643.721272 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 227.008 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.21501 -39.73468 -38.21749 -37.67546 -34.96799 -31.98969 -29.74850 -27.53133 -25.06539 -23.11921 -21.44225 -20.43534 -19.27194 -18.78039 -18.70223 -17.45872 -17.08556 -15.92784 -15.11415 -15.06154 -14.68341 -13.79939 -13.70844 -13.33075 -12.93986 -12.81948 -12.80064 -12.55405 -12.40604 -12.12160 -12.02392 -11.12230 -10.29071 -9.98375 -9.94429 -8.58470 -7.31874 -1.50867 -0.40581 -0.07227 0.42167 0.72063 1.11484 1.38251 1.39668 1.55401 2.13867 2.22459 3.33041 3.64687 3.78729 4.12536 4.49945 4.78650 4.91159 5.00126 5.11517 5.67720 6.42948 6.43608 6.47620 7.93228 8.25421 Molecular weight = 227.01amu Principal moments of inertia in cm(-1) A = 0.048618 B = 0.007537 C = 0.006544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.783037 B = 3714.007273 C = 4277.397698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.027 3.973 3 Si 0.993 3.007 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.243 1.243 7 C -0.521 4.521 8 H 0.098 0.902 9 C 0.378 3.622 10 O -0.575 6.575 11 C -0.175 4.175 12 C -0.138 4.138 13 C -0.024 4.024 14 C -0.263 4.263 15 N 0.072 4.928 16 O -0.157 6.157 17 O -0.188 6.188 18 S 0.357 5.643 19 H 0.291 0.709 20 H 0.167 0.833 21 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.429 -3.064 -0.555 7.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.195 4.195 3 Si 0.810 3.190 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.166 1.166 7 C -0.552 4.552 8 H 0.116 0.884 9 C 0.277 3.723 10 O -0.469 6.469 11 C -0.297 4.297 12 C -0.168 4.168 13 C -0.062 4.062 14 C -0.466 4.466 15 N 0.587 4.413 16 O -0.375 6.375 17 O -0.397 6.397 18 S 0.627 5.373 19 H 0.102 0.898 20 H 0.185 0.815 21 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 6.455 -1.607 -0.381 6.662 hybrid contribution -0.875 -0.870 -0.164 1.245 sum 5.579 -2.476 -0.545 6.128 Atomic orbital electron populations 1.70019 1.09919 1.30910 1.28500 1.27211 0.95557 1.05477 0.91281 0.85045 0.79421 0.74520 0.79988 1.18127 1.18854 1.16564 1.21440 0.96473 0.92199 1.45070 0.88409 1.17766 0.88256 0.85656 0.80657 1.90605 1.15792 1.87579 1.52969 1.27585 0.98151 1.02143 1.01862 1.20894 1.02174 0.89268 1.04425 1.20266 0.88294 1.03719 0.93888 1.25930 0.90817 0.99244 1.30596 1.42550 1.01152 1.00785 0.96767 1.94491 1.92351 0.97617 1.53027 1.94541 1.08334 1.80673 1.56102 1.83244 1.00952 0.90594 1.62542 0.89812 0.81546 0.79400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -40.73 11.75 21.89 0.26 -40.47 14 2 C 0.03 1.29 5.49 85.41 0.47 1.76 14 3 Si 0.99 34.67 29.57 68.60 2.03 36.70 14 4 H -0.26 -8.61 7.11 99.48 0.71 -7.91 14 5 H -0.26 -8.84 7.11 99.48 0.71 -8.14 14 6 H -0.24 -7.87 7.11 99.48 0.71 -7.16 14 7 C -0.52 -25.75 9.00 23.59 0.21 -25.54 14 8 H 0.10 4.25 7.12 -2.91 -0.02 4.22 14 9 C 0.38 19.66 6.88 25.23 0.17 19.83 14 10 O -0.58 -34.62 15.42 -5.46 -0.08 -34.70 14 11 C -0.17 -7.26 6.43 24.26 0.16 -7.10 14 12 C -0.14 -4.95 10.04 21.81 0.22 -4.74 14 13 C -0.02 -0.73 9.75 21.11 0.21 -0.53 14 14 C -0.26 -8.73 7.30 81.05 0.59 -8.13 14 15 N 0.07 2.45 4.45 -50.58 -0.23 2.23 14 16 O -0.16 -5.22 18.89 18.89 0.36 -4.87 14 17 O -0.19 -6.57 18.99 18.89 0.36 -6.21 14 18 S 0.36 12.19 21.72 -56.49 -1.23 10.96 14 19 H 0.29 13.67 8.29 -92.70 -0.77 12.90 14 20 H 0.17 5.79 8.06 -2.91 -0.02 5.77 14 21 H 0.19 4.50 7.98 -2.91 -0.02 4.48 14 Total: -1.00 -61.42 228.45 4.78 -56.64 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: 1.28 Total: 4.16 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: 2.03 Total: -24.45 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.03 Total: -38.24 kcal Atomic # 8 Polarization: -46.41 SS G_CDS: 0.63 Total: -45.78 kcal Atomic # 14 Polarization: 34.67 SS G_CDS: 2.03 Total: 36.70 kcal Atomic # 16 Polarization: 12.19 SS G_CDS: -1.23 Total: 10.96 kcal Total: -61.42 4.78 -56.64 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236383064.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.375 kcal (2) G-P(sol) polarization free energy of solvation -61.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds