Wall clock time and date at job start Mon Mar 30 2020 03:21:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46902 * 1
3 3 C 1.46895 * 111.00207 * 2 1
4 4 C 1.50706 * 109.47182 * 66.04539 * 3 2 1
5 5 H 1.08000 * 119.99302 * 0.02562 * 4 3 2
6 6 C 1.37871 * 120.00436 * 179.72677 * 4 3 2
7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 3
8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 3
9 9 H 1.48497 * 109.47154 * 89.99418 * 8 6 4
10 10 H 1.48493 * 109.47010 * 209.99942 * 8 6 4
11 11 H 1.48502 * 109.46736 * 329.99638 * 8 6 4
12 12 C 1.46902 * 110.99873 * 236.04809 * 2 1 3
13 13 C 1.53004 * 109.46967 * 293.95146 * 12 2 1
14 14 C 1.53004 * 109.46809 * 179.97438 * 13 12 2
15 15 H 1.09003 * 110.62595 * 56.66014 * 14 13 12
16 16 C 1.55143 * 110.70360 * 179.97438 * 14 13 12
17 17 C 1.54911 * 101.65311 * 154.03758 * 16 14 13
18 18 N 1.47841 * 104.79412 * 322.93517 * 17 16 14
19 19 C 1.46903 * 111.00069 * 146.36368 * 18 17 16
20 20 C 1.47438 * 108.57258 * 24.09070 * 18 17 16
21 21 H 1.09002 * 109.46967 * 60.00019 * 1 2 3
22 22 H 1.08998 * 109.47153 * 179.97438 * 1 2 3
23 23 H 1.08994 * 109.47180 * 300.00243 * 1 2 3
24 24 H 1.09001 * 109.47613 * 306.04885 * 3 2 1
25 25 H 1.08998 * 109.47678 * 186.04781 * 3 2 1
26 26 H 0.97004 * 120.00247 * 180.02562 * 7 6 4
27 27 H 1.08994 * 109.47363 * 53.95414 * 12 2 1
28 28 H 1.09002 * 109.47199 * 173.95698 * 12 2 1
29 29 H 1.08994 * 109.47298 * 300.00308 * 13 12 2
30 30 H 1.09000 * 109.46902 * 60.00756 * 13 12 2
31 31 H 1.09001 * 110.99272 * 272.13363 * 16 14 13
32 32 H 1.09005 * 110.98937 * 35.94793 * 16 14 13
33 33 H 1.08996 * 110.37198 * 204.10001 * 17 16 14
34 34 H 1.09002 * 110.45968 * 81.80898 * 17 16 14
35 35 H 1.08998 * 109.46824 * 299.15345 * 19 18 17
36 36 H 1.08996 * 109.47135 * 59.14955 * 19 18 17
37 37 H 1.08998 * 109.46855 * 179.15416 * 19 18 17
38 38 H 1.08996 * 109.89228 * 239.60831 * 20 18 17
39 39 H 1.09003 * 110.02493 * 118.49110 * 20 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.6370 2.0471 1.2985
5 1 1.0746 1.5111 2.0488
6 6 2.0321 3.3473 1.5311
7 7 2.7224 3.9978 0.6200
8 14 1.5883 4.1847 3.1409
9 1 2.6623 3.9424 4.1374
10 1 1.4426 5.6451 2.9154
11 1 0.3073 3.6320 3.6495
12 6 1.9954 -0.7660 -1.1376
13 6 1.6315 -2.2426 -0.9704
14 6 2.1792 -3.0403 -2.1556
15 1 3.2564 -2.9010 -2.2472
16 6 1.8263 -4.5444 -2.0145
17 6 1.8275 -5.0062 -3.4932
18 7 1.2550 -3.8687 -4.2443
19 6 1.8648 -3.7570 -5.5761
20 6 1.4642 -2.6365 -3.4622
21 1 -0.3633 0.5138 -0.8900
22 1 -0.3633 -1.0276 -0.0005
23 1 -0.3633 0.5138 0.8899
24 1 1.5612 1.9274 -0.8309
25 1 3.0797 1.3444 -0.1083
26 1 3.0007 4.9125 0.7838
27 1 1.5611 -0.3872 -2.0628
28 1 3.0797 -0.6611 -1.1757
29 1 2.0658 -2.6214 -0.0452
30 1 0.5472 -2.3475 -0.9324
31 1 2.5878 -5.0719 -1.4400
32 1 0.8414 -4.6739 -1.5658
33 1 1.2052 -5.8928 -3.6143
34 1 2.8448 -5.2087 -3.8283
35 1 2.9364 -3.5870 -5.4718
36 1 1.6956 -4.6793 -6.1317
37 1 1.4149 -2.9217 -6.1127
38 1 0.5037 -2.1757 -3.2321
39 1 2.0850 -1.9387 -4.0241
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000258907332.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:21:56
Heat of formation + Delta-G solvation = -2.792570 kcal
Electronic energy + Delta-G solvation = -15873.899178 eV
Core-core repulsion = 13429.927538 eV
Total energy + Delta-G solvation = -2443.971640 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-39.25291 -36.69997 -33.55305 -32.33507 -30.25173 -27.88424 -26.90674 -25.91653
-24.50997 -22.15591 -21.18008 -20.19290 -19.59087 -16.41963 -16.18016 -15.63829
-14.85660 -14.55891 -14.14760 -13.98050 -13.62009 -13.35630 -13.13338 -12.65684
-12.24919 -11.96470 -11.82104 -11.63160 -11.40961 -11.26509 -10.94516 -10.91852
-10.79766 -10.61575 -10.43151 -10.33361 -10.19548 -9.70977 -9.15122 -8.43185
-8.40900 -7.18141 -6.00326 -4.01480 3.33781 3.39360 3.43271 3.93297
4.43429 4.55828 4.63763 4.83369 5.08953 5.23369 5.24064 5.28865
5.35535 5.43223 5.56627 5.58384 5.69632 5.73356 5.82885 5.85085
5.98638 6.05989 6.12097 6.19582 6.31186 6.40156 6.57701 6.60559
6.81256 6.85526 6.95307 7.33453 7.38523 7.83627 8.12918 8.25079
8.59915 9.06465 9.62679 11.10710
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.059554 B = 0.004559 C = 0.004416
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 470.051283 B = 6139.589804 C = 6339.194691
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 N -0.542 5.542
3 C 0.192 3.808
4 C -0.506 4.506
5 H 0.063 0.937
6 C 0.054 3.946
7 N -0.900 5.900
8 Si 0.898 3.102
9 H -0.280 1.280
10 H -0.287 1.287
11 H -0.274 1.274
12 C 0.055 3.945
13 C -0.102 4.102
14 C -0.107 4.107
15 H 0.074 0.926
16 C -0.124 4.124
17 C 0.040 3.960
18 N -0.538 5.538
19 C 0.020 3.980
20 C 0.045 3.955
21 H 0.010 0.990
22 H 0.046 0.954
23 H 0.071 0.929
24 H -0.010 1.010
25 H 0.028 0.972
26 H 0.261 0.739
27 H 0.021 0.979
28 H 0.063 0.937
29 H 0.070 0.930
30 H 0.063 0.937
31 H 0.072 0.928
32 H 0.076 0.924
33 H 0.077 0.923
34 H 0.044 0.956
35 H 0.026 0.974
36 H 0.065 0.935
37 H 0.067 0.933
38 H 0.080 0.920
39 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.485 -15.615 -8.502 17.841
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 N -0.267 5.267
3 C 0.067 3.933
4 C -0.545 4.545
5 H 0.081 0.919
6 C -0.147 4.147
7 N -0.540 5.540
8 Si 0.726 3.274
9 H -0.206 1.206
10 H -0.213 1.213
11 H -0.198 1.198
12 C -0.073 4.073
13 C -0.141 4.141
14 C -0.127 4.127
15 H 0.092 0.908
16 C -0.162 4.162
17 C -0.087 4.087
18 N -0.262 5.262
19 C -0.129 4.129
20 C -0.083 4.083
21 H 0.028 0.972
22 H 0.065 0.935
23 H 0.090 0.910
24 H 0.007 0.993
25 H 0.046 0.954
26 H 0.070 0.930
27 H 0.039 0.961
28 H 0.082 0.918
29 H 0.088 0.912
30 H 0.082 0.918
31 H 0.091 0.909
32 H 0.095 0.905
33 H 0.095 0.905
34 H 0.062 0.938
35 H 0.044 0.956
36 H 0.083 0.917
37 H 0.086 0.914
38 H 0.098 0.902
39 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -1.775 -15.729 -8.200 17.827
hybrid contribution 0.516 1.182 0.065 1.292
sum -1.259 -14.547 -8.136 16.715
Atomic orbital electron populations
1.22232 0.89109 0.99161 1.00652 1.62105 1.06856 1.17723 1.39972
1.19731 0.95292 0.81749 0.96549 1.21186 1.34592 0.97002 1.01689
0.91868 1.24996 0.95331 0.97368 0.96999 1.69964 1.38283 1.11607
1.34147 0.86494 0.78862 0.78409 0.83624 1.20640 1.21338 1.19847
1.22059 0.99754 0.92966 0.92562 1.21578 1.00772 0.94809 0.96893
1.22399 0.99981 0.94834 0.95487 0.90777 1.22762 1.02363 0.95398
0.95707 1.23053 0.97778 0.94515 0.93380 1.63586 1.55911 1.03724
1.02951 1.22529 0.96834 1.02290 0.91222 1.22962 1.00563 0.91470
0.93285 0.97172 0.93499 0.91036 0.99256 0.95368 0.92972 0.96116
0.91805 0.91157 0.91822 0.90886 0.90484 0.90502 0.93800 0.95564
0.91658 0.91410 0.90203 0.92762
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.74 9.16 60.07 0.55 1.29 16
2 N -0.54 -12.01 4.75 -244.37 -1.16 -13.18 16
3 C 0.19 5.14 4.72 -4.98 -0.02 5.12 16
4 C -0.51 -14.51 8.51 -34.44 -0.29 -14.80 16
5 H 0.06 1.79 7.10 -52.49 -0.37 1.42 16
6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16
7 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16
8 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16
9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
10 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16
11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16
12 C 0.06 1.00 4.80 -3.82 -0.02 0.99 16
13 C -0.10 -1.49 4.53 -26.73 -0.12 -1.61 16
14 C -0.11 -1.32 2.98 -88.79 -0.26 -1.58 16
15 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16
16 C -0.12 -1.31 6.52 -24.59 -0.16 -1.47 16
17 C 0.04 0.41 6.73 -2.30 -0.02 0.39 16
18 N -0.54 -6.29 5.44 -239.53 -1.30 -7.59 16
19 C 0.02 0.20 9.12 60.07 0.55 0.74 16
20 C 0.04 0.56 5.64 -2.84 -0.02 0.54 16
21 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16
22 H 0.05 0.80 6.30 -51.93 -0.33 0.47 16
23 H 0.07 1.53 6.86 -51.93 -0.36 1.17 16
24 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16
25 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16
26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16
27 H 0.02 0.38 7.47 -51.93 -0.39 -0.01 16
28 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16
29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16
30 H 0.06 0.92 6.39 -51.93 -0.33 0.59 16
31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
32 H 0.08 0.83 8.05 -51.93 -0.42 0.41 16
33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16
34 H 0.04 0.42 7.78 -51.93 -0.40 0.01 16
35 H 0.03 0.25 8.10 -51.93 -0.42 -0.17 16
36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
38 H 0.08 1.08 7.76 -51.93 -0.40 0.68 16
39 H 0.05 0.68 7.59 -51.93 -0.39 0.29 16
LS Contribution 305.21 15.07 4.60 4.60
Total: -1.00 -30.24 305.21 -9.22 -39.46
By element:
Atomic # 1 Polarization: 2.34 SS G_CDS: -7.16 Total: -4.82 kcal
Atomic # 6 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.92 kcal
Atomic # 7 Polarization: -45.46 SS G_CDS: -1.73 Total: -47.19 kcal
Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal
Total LS contribution 4.60 Total: 4.60 kcal
Total: -30.24 -9.22 -39.46 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000258907332.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.663 kcal
(2) G-P(sol) polarization free energy of solvation -30.239 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.425 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.456 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.793 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds