Wall clock time and date at job start Mon Mar 30 2020 03:21:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46902 * 1
3 3 C 1.46895 * 111.00207 * 2 1
4 4 C 1.50706 * 109.47182 * 66.04539 * 3 2 1
5 5 H 1.08000 * 119.99302 * 0.02562 * 4 3 2
6 6 C 1.37871 * 120.00436 * 179.72677 * 4 3 2
7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 3
8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 3
9 9 H 1.48497 * 109.47154 * 89.99418 * 8 6 4
10 10 H 1.48493 * 109.47010 * 209.99942 * 8 6 4
11 11 H 1.48502 * 109.46736 * 329.99638 * 8 6 4
12 12 C 1.46902 * 110.99873 * 236.04809 * 2 1 3
13 13 C 1.53004 * 109.46967 * 293.95146 * 12 2 1
14 14 C 1.53004 * 109.46809 * 179.97438 * 13 12 2
15 15 H 1.09003 * 110.62595 * 56.66014 * 14 13 12
16 16 C 1.55143 * 110.70360 * 179.97438 * 14 13 12
17 17 C 1.54911 * 101.65311 * 154.03758 * 16 14 13
18 18 N 1.47841 * 104.79412 * 322.93517 * 17 16 14
19 19 C 1.46903 * 111.00069 * 146.36368 * 18 17 16
20 20 C 1.47438 * 108.57258 * 24.09070 * 18 17 16
21 21 H 1.09002 * 109.46967 * 60.00019 * 1 2 3
22 22 H 1.08998 * 109.47153 * 179.97438 * 1 2 3
23 23 H 1.08994 * 109.47180 * 300.00243 * 1 2 3
24 24 H 1.09001 * 109.47613 * 306.04885 * 3 2 1
25 25 H 1.08998 * 109.47678 * 186.04781 * 3 2 1
26 26 H 0.97004 * 120.00247 * 180.02562 * 7 6 4
27 27 H 1.08994 * 109.47363 * 53.95414 * 12 2 1
28 28 H 1.09002 * 109.47199 * 173.95698 * 12 2 1
29 29 H 1.08994 * 109.47298 * 300.00308 * 13 12 2
30 30 H 1.09000 * 109.46902 * 60.00756 * 13 12 2
31 31 H 1.09001 * 110.99272 * 272.13363 * 16 14 13
32 32 H 1.09005 * 110.98937 * 35.94793 * 16 14 13
33 33 H 1.08996 * 110.37198 * 204.10001 * 17 16 14
34 34 H 1.09002 * 110.45968 * 81.80898 * 17 16 14
35 35 H 1.08998 * 109.46824 * 299.15345 * 19 18 17
36 36 H 1.08996 * 109.47135 * 59.14955 * 19 18 17
37 37 H 1.08998 * 109.46855 * 179.15416 * 19 18 17
38 38 H 1.08996 * 109.89228 * 239.60831 * 20 18 17
39 39 H 1.09003 * 110.02493 * 118.49110 * 20 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.6370 2.0471 1.2985
5 1 1.0746 1.5111 2.0488
6 6 2.0321 3.3473 1.5311
7 7 2.7224 3.9978 0.6200
8 14 1.5883 4.1847 3.1409
9 1 2.6623 3.9424 4.1374
10 1 1.4426 5.6451 2.9154
11 1 0.3073 3.6320 3.6495
12 6 1.9954 -0.7660 -1.1376
13 6 1.6315 -2.2426 -0.9704
14 6 2.1792 -3.0403 -2.1556
15 1 3.2564 -2.9010 -2.2472
16 6 1.8263 -4.5444 -2.0145
17 6 1.8275 -5.0062 -3.4932
18 7 1.2550 -3.8687 -4.2443
19 6 1.8648 -3.7570 -5.5761
20 6 1.4642 -2.6365 -3.4622
21 1 -0.3633 0.5138 -0.8900
22 1 -0.3633 -1.0276 -0.0005
23 1 -0.3633 0.5138 0.8899
24 1 1.5612 1.9274 -0.8309
25 1 3.0797 1.3444 -0.1083
26 1 3.0007 4.9125 0.7838
27 1 1.5611 -0.3872 -2.0628
28 1 3.0797 -0.6611 -1.1757
29 1 2.0658 -2.6214 -0.0452
30 1 0.5472 -2.3475 -0.9324
31 1 2.5878 -5.0719 -1.4400
32 1 0.8414 -4.6739 -1.5658
33 1 1.2052 -5.8928 -3.6143
34 1 2.8448 -5.2087 -3.8283
35 1 2.9364 -3.5870 -5.4718
36 1 1.6956 -4.6793 -6.1317
37 1 1.4149 -2.9217 -6.1127
38 1 0.5037 -2.1757 -3.2321
39 1 2.0850 -1.9387 -4.0241
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000258907332.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:21:56
Heat of formation + Delta-G solvation = -23.654944 kcal
Electronic energy + Delta-G solvation = -15874.803838 eV
Core-core repulsion = 13429.927538 eV
Total energy + Delta-G solvation = -2444.876300 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.22249 -38.34682 -35.10454 -34.07277 -31.33975 -29.42350 -28.50638 -27.19874
-25.95320 -23.75578 -22.21192 -21.60239 -20.80303 -18.50688 -17.25730 -16.89996
-16.50575 -16.05099 -15.66416 -15.17255 -15.08696 -14.55092 -14.21982 -13.98773
-13.75711 -13.45147 -13.16534 -13.01025 -12.77622 -12.61466 -12.48802 -12.34884
-12.23918 -12.11698 -11.90303 -11.65759 -11.52260 -11.37771 -11.11149 -10.62251
-9.30039 -9.02024 -8.21276 -6.31947 1.41115 1.43045 1.54221 2.40254
3.08313 3.11072 3.30077 3.65966 3.81378 3.88063 4.22190 4.36249
4.38816 4.46001 4.49403 4.56241 4.60122 4.66499 4.71251 4.76799
4.79005 4.95289 4.96867 5.04538 5.09851 5.13722 5.15839 5.18217
5.28736 5.35574 5.44921 5.65000 5.98219 6.04384 6.11679 6.32936
6.64529 6.84595 7.38142 8.90118
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.059554 B = 0.004559 C = 0.004416
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 470.051283 B = 6139.589804 C = 6339.194691
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.041 3.959
2 N -0.550 5.550
3 C 0.206 3.794
4 C -0.525 4.525
5 H 0.064 0.936
6 C 0.000 4.000
7 N -0.937 5.937
8 Si 0.972 3.028
9 H -0.272 1.272
10 H -0.282 1.282
11 H -0.263 1.263
12 C 0.056 3.944
13 C -0.087 4.087
14 C -0.103 4.103
15 H 0.073 0.927
16 C -0.118 4.118
17 C 0.041 3.959
18 N -0.551 5.551
19 C 0.019 3.981
20 C 0.046 3.954
21 H 0.006 0.994
22 H 0.083 0.917
23 H 0.056 0.944
24 H -0.041 1.041
25 H 0.001 0.999
26 H 0.265 0.735
27 H 0.019 0.981
28 H 0.054 0.946
29 H 0.069 0.931
30 H 0.068 0.932
31 H 0.087 0.913
32 H 0.077 0.923
33 H 0.089 0.911
34 H 0.052 0.948
35 H 0.027 0.973
36 H 0.080 0.920
37 H 0.066 0.934
38 H 0.067 0.933
39 H 0.048 0.952
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.038 -17.065 -7.900 18.915
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 N -0.274 5.274
3 C 0.079 3.921
4 C -0.563 4.563
5 H 0.082 0.918
6 C -0.198 4.198
7 N -0.577 5.577
8 Si 0.796 3.204
9 H -0.198 1.198
10 H -0.207 1.207
11 H -0.187 1.187
12 C -0.072 4.072
13 C -0.126 4.126
14 C -0.123 4.123
15 H 0.092 0.908
16 C -0.156 4.156
17 C -0.086 4.086
18 N -0.275 5.275
19 C -0.129 4.129
20 C -0.082 4.082
21 H 0.024 0.976
22 H 0.101 0.899
23 H 0.074 0.926
24 H -0.023 1.023
25 H 0.019 0.981
26 H 0.073 0.927
27 H 0.037 0.963
28 H 0.072 0.928
29 H 0.088 0.912
30 H 0.086 0.914
31 H 0.106 0.894
32 H 0.095 0.905
33 H 0.107 0.893
34 H 0.070 0.930
35 H 0.046 0.954
36 H 0.099 0.901
37 H 0.084 0.916
38 H 0.085 0.915
39 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges -2.334 -17.210 -7.608 18.961
hybrid contribution 0.696 1.599 -0.197 1.755
sum -1.638 -15.612 -7.805 17.531
Atomic orbital electron populations
1.22234 0.87642 1.01187 0.99680 1.62047 1.08237 1.15069 1.42059
1.19400 0.93526 0.84109 0.95023 1.21496 1.34856 0.97683 1.02303
0.91757 1.25959 0.94930 0.98042 1.00865 1.70095 1.39168 1.12093
1.36362 0.85340 0.79039 0.77205 0.78787 1.19769 1.20719 1.18707
1.22142 0.99043 0.94884 0.91129 1.21436 1.01066 0.92071 0.97978
1.22328 0.99752 0.95984 0.94265 0.90815 1.22747 1.02838 0.93718
0.96331 1.23116 0.98474 0.94282 0.92778 1.63591 1.56693 1.03594
1.03647 1.22572 0.96774 1.03089 0.90502 1.22878 0.99709 0.92019
0.93599 0.97571 0.89883 0.92561 1.02298 0.98066 0.92663 0.96264
0.92759 0.91192 0.91358 0.89400 0.90454 0.89301 0.92981 0.95430
0.90149 0.91559 0.91506 0.93377
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.61 9.16 127.69 1.17 2.78 16
2 N -0.55 -24.59 4.75 -927.05 -4.41 -29.00 16
3 C 0.21 11.41 4.72 85.56 0.40 11.81 16
4 C -0.53 -30.55 8.51 25.60 0.22 -30.33 16
5 H 0.06 3.65 7.10 -2.91 -0.02 3.63 16
6 C 0.00 -0.01 5.46 84.65 0.46 0.45 16
7 N -0.94 -57.48 13.29 21.45 0.28 -57.20 16
8 Si 0.97 44.82 29.54 68.60 2.03 46.85 16
9 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16
10 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16
11 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16
12 C 0.06 2.05 4.80 86.30 0.41 2.47 16
13 C -0.09 -2.42 4.53 30.60 0.14 -2.28 16
14 C -0.10 -2.38 2.98 -9.61 -0.03 -2.41 16
15 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16
16 C -0.12 -2.19 6.52 31.98 0.21 -1.98 16
17 C 0.04 0.72 6.73 86.78 0.58 1.31 16
18 N -0.55 -11.93 5.44 -911.72 -4.96 -16.89 16
19 C 0.02 0.34 9.12 127.69 1.16 1.51 16
20 C 0.05 1.11 5.64 86.65 0.49 1.60 16
21 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16
22 H 0.08 2.67 6.30 -2.39 -0.02 2.65 16
23 H 0.06 2.38 6.86 -2.39 -0.02 2.36 16
24 H -0.04 -2.45 8.12 -2.39 -0.02 -2.46 16
25 H 0.00 0.07 7.93 -2.39 -0.02 0.05 16
26 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16
27 H 0.02 0.71 7.47 -2.39 -0.02 0.69 16
28 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16
29 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16
30 H 0.07 1.84 6.39 -2.39 -0.02 1.82 16
31 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16
32 H 0.08 1.45 8.05 -2.38 -0.02 1.43 16
33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16
34 H 0.05 0.85 7.78 -2.39 -0.02 0.83 16
35 H 0.03 0.48 8.10 -2.39 -0.02 0.46 16
36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16
37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16
38 H 0.07 1.77 7.76 -2.39 -0.02 1.75 16
39 H 0.05 1.19 7.59 -2.39 -0.02 1.18 16
Total: -1.00 -64.91 305.21 -0.86 -65.77
By element:
Atomic # 1 Polarization: 4.58 SS G_CDS: 0.98 Total: 5.55 kcal
Atomic # 6 Polarization: -20.31 SS G_CDS: 5.22 Total: -15.08 kcal
Atomic # 7 Polarization: -94.00 SS G_CDS: -9.08 Total: -103.09 kcal
Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal
Total: -64.91 -0.86 -65.77 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000258907332.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.115 kcal
(2) G-P(sol) polarization free energy of solvation -64.913 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.799 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.856 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.770 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.655 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds