Wall clock time and date at job start Mon Mar 30 2020 03:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 111.00207 * 2 1 4 4 C 1.50706 * 109.47182 * 66.04539 * 3 2 1 5 5 H 1.08000 * 119.99302 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00436 * 179.72677 * 4 3 2 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47154 * 89.99418 * 8 6 4 10 10 H 1.48493 * 109.47010 * 209.99942 * 8 6 4 11 11 H 1.48502 * 109.46736 * 329.99638 * 8 6 4 12 12 C 1.46902 * 110.99873 * 236.04809 * 2 1 3 13 13 C 1.53004 * 109.46967 * 293.95146 * 12 2 1 14 14 C 1.53004 * 109.46809 * 179.97438 * 13 12 2 15 15 H 1.09003 * 110.62595 * 56.66014 * 14 13 12 16 16 C 1.55143 * 110.70360 * 179.97438 * 14 13 12 17 17 C 1.54911 * 101.65311 * 154.03758 * 16 14 13 18 18 N 1.47841 * 104.79412 * 322.93517 * 17 16 14 19 19 C 1.46903 * 111.00069 * 146.36368 * 18 17 16 20 20 C 1.47438 * 108.57258 * 24.09070 * 18 17 16 21 21 H 1.09002 * 109.46967 * 60.00019 * 1 2 3 22 22 H 1.08998 * 109.47153 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47180 * 300.00243 * 1 2 3 24 24 H 1.09001 * 109.47613 * 306.04885 * 3 2 1 25 25 H 1.08998 * 109.47678 * 186.04781 * 3 2 1 26 26 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 27 27 H 1.08994 * 109.47363 * 53.95414 * 12 2 1 28 28 H 1.09002 * 109.47199 * 173.95698 * 12 2 1 29 29 H 1.08994 * 109.47298 * 300.00308 * 13 12 2 30 30 H 1.09000 * 109.46902 * 60.00756 * 13 12 2 31 31 H 1.09001 * 110.99272 * 272.13363 * 16 14 13 32 32 H 1.09005 * 110.98937 * 35.94793 * 16 14 13 33 33 H 1.08996 * 110.37198 * 204.10001 * 17 16 14 34 34 H 1.09002 * 110.45968 * 81.80898 * 17 16 14 35 35 H 1.08998 * 109.46824 * 299.15345 * 19 18 17 36 36 H 1.08996 * 109.47135 * 59.14955 * 19 18 17 37 37 H 1.08998 * 109.46855 * 179.15416 * 19 18 17 38 38 H 1.08996 * 109.89228 * 239.60831 * 20 18 17 39 39 H 1.09003 * 110.02493 * 118.49110 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0746 1.5111 2.0488 6 6 2.0321 3.3473 1.5311 7 7 2.7224 3.9978 0.6200 8 14 1.5883 4.1847 3.1409 9 1 2.6623 3.9424 4.1374 10 1 1.4426 5.6451 2.9154 11 1 0.3073 3.6320 3.6495 12 6 1.9954 -0.7660 -1.1376 13 6 1.6315 -2.2426 -0.9704 14 6 2.1792 -3.0403 -2.1556 15 1 3.2564 -2.9010 -2.2472 16 6 1.8263 -4.5444 -2.0145 17 6 1.8275 -5.0062 -3.4932 18 7 1.2550 -3.8687 -4.2443 19 6 1.8648 -3.7570 -5.5761 20 6 1.4642 -2.6365 -3.4622 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.5612 1.9274 -0.8309 25 1 3.0797 1.3444 -0.1083 26 1 3.0007 4.9125 0.7838 27 1 1.5611 -0.3872 -2.0628 28 1 3.0797 -0.6611 -1.1757 29 1 2.0658 -2.6214 -0.0452 30 1 0.5472 -2.3475 -0.9324 31 1 2.5878 -5.0719 -1.4400 32 1 0.8414 -4.6739 -1.5658 33 1 1.2052 -5.8928 -3.6143 34 1 2.8448 -5.2087 -3.8283 35 1 2.9364 -3.5870 -5.4718 36 1 1.6956 -4.6793 -6.1317 37 1 1.4149 -2.9217 -6.1127 38 1 0.5037 -2.1757 -3.2321 39 1 2.0850 -1.9387 -4.0241 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258907332.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:56 Heat of formation + Delta-G solvation = -23.654944 kcal Electronic energy + Delta-G solvation = -15874.803838 eV Core-core repulsion = 13429.927538 eV Total energy + Delta-G solvation = -2444.876300 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.22249 -38.34682 -35.10454 -34.07277 -31.33975 -29.42350 -28.50638 -27.19874 -25.95320 -23.75578 -22.21192 -21.60239 -20.80303 -18.50688 -17.25730 -16.89996 -16.50575 -16.05099 -15.66416 -15.17255 -15.08696 -14.55092 -14.21982 -13.98773 -13.75711 -13.45147 -13.16534 -13.01025 -12.77622 -12.61466 -12.48802 -12.34884 -12.23918 -12.11698 -11.90303 -11.65759 -11.52260 -11.37771 -11.11149 -10.62251 -9.30039 -9.02024 -8.21276 -6.31947 1.41115 1.43045 1.54221 2.40254 3.08313 3.11072 3.30077 3.65966 3.81378 3.88063 4.22190 4.36249 4.38816 4.46001 4.49403 4.56241 4.60122 4.66499 4.71251 4.76799 4.79005 4.95289 4.96867 5.04538 5.09851 5.13722 5.15839 5.18217 5.28736 5.35574 5.44921 5.65000 5.98219 6.04384 6.11679 6.32936 6.64529 6.84595 7.38142 8.90118 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.059554 B = 0.004559 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.051283 B = 6139.589804 C = 6339.194691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.550 5.550 3 C 0.206 3.794 4 C -0.525 4.525 5 H 0.064 0.936 6 C 0.000 4.000 7 N -0.937 5.937 8 Si 0.972 3.028 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.263 1.263 12 C 0.056 3.944 13 C -0.087 4.087 14 C -0.103 4.103 15 H 0.073 0.927 16 C -0.118 4.118 17 C 0.041 3.959 18 N -0.551 5.551 19 C 0.019 3.981 20 C 0.046 3.954 21 H 0.006 0.994 22 H 0.083 0.917 23 H 0.056 0.944 24 H -0.041 1.041 25 H 0.001 0.999 26 H 0.265 0.735 27 H 0.019 0.981 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.052 0.948 35 H 0.027 0.973 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.038 -17.065 -7.900 18.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.274 5.274 3 C 0.079 3.921 4 C -0.563 4.563 5 H 0.082 0.918 6 C -0.198 4.198 7 N -0.577 5.577 8 Si 0.796 3.204 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.187 1.187 12 C -0.072 4.072 13 C -0.126 4.126 14 C -0.123 4.123 15 H 0.092 0.908 16 C -0.156 4.156 17 C -0.086 4.086 18 N -0.275 5.275 19 C -0.129 4.129 20 C -0.082 4.082 21 H 0.024 0.976 22 H 0.101 0.899 23 H 0.074 0.926 24 H -0.023 1.023 25 H 0.019 0.981 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.070 0.930 35 H 0.046 0.954 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.334 -17.210 -7.608 18.961 hybrid contribution 0.696 1.599 -0.197 1.755 sum -1.638 -15.612 -7.805 17.531 Atomic orbital electron populations 1.22234 0.87642 1.01187 0.99680 1.62047 1.08237 1.15069 1.42059 1.19400 0.93526 0.84109 0.95023 1.21496 1.34856 0.97683 1.02303 0.91757 1.25959 0.94930 0.98042 1.00865 1.70095 1.39168 1.12093 1.36362 0.85340 0.79039 0.77205 0.78787 1.19769 1.20719 1.18707 1.22142 0.99043 0.94884 0.91129 1.21436 1.01066 0.92071 0.97978 1.22328 0.99752 0.95984 0.94265 0.90815 1.22747 1.02838 0.93718 0.96331 1.23116 0.98474 0.94282 0.92778 1.63591 1.56693 1.03594 1.03647 1.22572 0.96774 1.03089 0.90502 1.22878 0.99709 0.92019 0.93599 0.97571 0.89883 0.92561 1.02298 0.98066 0.92663 0.96264 0.92759 0.91192 0.91358 0.89400 0.90454 0.89301 0.92981 0.95430 0.90149 0.91559 0.91506 0.93377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.61 9.16 127.69 1.17 2.78 16 2 N -0.55 -24.59 4.75 -927.05 -4.41 -29.00 16 3 C 0.21 11.41 4.72 85.56 0.40 11.81 16 4 C -0.53 -30.55 8.51 25.60 0.22 -30.33 16 5 H 0.06 3.65 7.10 -2.91 -0.02 3.63 16 6 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 7 N -0.94 -57.48 13.29 21.45 0.28 -57.20 16 8 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 9 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 12 C 0.06 2.05 4.80 86.30 0.41 2.47 16 13 C -0.09 -2.42 4.53 30.60 0.14 -2.28 16 14 C -0.10 -2.38 2.98 -9.61 -0.03 -2.41 16 15 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 16 C -0.12 -2.19 6.52 31.98 0.21 -1.98 16 17 C 0.04 0.72 6.73 86.78 0.58 1.31 16 18 N -0.55 -11.93 5.44 -911.72 -4.96 -16.89 16 19 C 0.02 0.34 9.12 127.69 1.16 1.51 16 20 C 0.05 1.11 5.64 86.65 0.49 1.60 16 21 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 22 H 0.08 2.67 6.30 -2.39 -0.02 2.65 16 23 H 0.06 2.38 6.86 -2.39 -0.02 2.36 16 24 H -0.04 -2.45 8.12 -2.39 -0.02 -2.46 16 25 H 0.00 0.07 7.93 -2.39 -0.02 0.05 16 26 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 27 H 0.02 0.71 7.47 -2.39 -0.02 0.69 16 28 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16 29 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.07 1.84 6.39 -2.39 -0.02 1.82 16 31 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.45 8.05 -2.38 -0.02 1.43 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.05 0.85 7.78 -2.39 -0.02 0.83 16 35 H 0.03 0.48 8.10 -2.39 -0.02 0.46 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 1.77 7.76 -2.39 -0.02 1.75 16 39 H 0.05 1.19 7.59 -2.39 -0.02 1.18 16 Total: -1.00 -64.91 305.21 -0.86 -65.77 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: 0.98 Total: 5.55 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: 5.22 Total: -15.08 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -9.08 Total: -103.09 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -64.91 -0.86 -65.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258907332.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.115 kcal (2) G-P(sol) polarization free energy of solvation -64.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds