Wall clock time and date at job start Mon Mar 30 2020 03:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36936 * 119.99964 * 2 1 4 4 H 1.08000 * 119.99664 * 202.34320 * 3 2 1 5 5 C 1.38811 * 120.00084 * 22.34612 * 3 2 1 6 6 N 1.31616 * 120.00132 * 11.35382 * 5 3 2 7 7 Si 1.86807 * 119.99787 * 191.35522 * 5 3 2 8 8 H 1.48496 * 109.47230 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.46835 * 120.00125 * 7 5 3 10 10 H 1.48499 * 109.46759 * 239.99618 * 7 5 3 11 11 C 1.46497 * 119.99756 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.47022 * 269.99333 * 11 2 1 13 13 C 1.53004 * 109.47077 * 179.97438 * 12 11 2 14 14 H 1.08996 * 109.49806 * 55.00498 * 13 12 11 15 15 C 1.53117 * 109.53314 * 175.10275 * 13 12 11 16 16 C 1.53115 * 109.15830 * 177.61871 * 15 13 12 17 17 C 1.53034 * 109.27983 * 302.34111 * 16 15 13 18 18 N 1.46847 * 109.52129 * 59.18181 * 17 16 15 19 19 C 1.46900 * 111.00113 * 174.16135 * 18 17 16 20 20 C 1.46850 * 111.20024 * 298.25800 * 18 17 16 21 21 H 1.09000 * 109.46745 * 274.20856 * 1 2 3 22 22 H 1.08997 * 109.47297 * 34.20575 * 1 2 3 23 23 H 1.08993 * 109.47358 * 154.21006 * 1 2 3 24 24 H 0.97002 * 120.00278 * 180.02562 * 6 5 3 25 25 H 1.09002 * 109.47179 * 150.00267 * 11 2 1 26 26 H 1.08994 * 109.47786 * 29.99834 * 11 2 1 27 27 H 1.09002 * 109.46381 * 60.00445 * 12 11 2 28 28 H 1.08996 * 109.46977 * 300.00363 * 12 11 2 29 29 H 1.09002 * 109.52509 * 297.52032 * 15 13 12 30 30 H 1.08997 * 109.52608 * 57.70941 * 15 13 12 31 31 H 1.09007 * 109.50418 * 182.40560 * 16 15 13 32 32 H 1.09004 * 109.50897 * 62.28570 * 16 15 13 33 33 H 1.09000 * 109.46311 * 299.16846 * 17 16 15 34 34 H 1.09003 * 109.46416 * 179.19389 * 17 16 15 35 35 H 1.09002 * 109.47046 * 184.20808 * 19 18 17 36 36 H 1.09004 * 109.47341 * 304.20697 * 19 18 17 37 37 H 1.09000 * 109.47162 * 64.21212 * 19 18 17 38 38 H 1.08998 * 109.46193 * 301.72941 * 20 18 17 39 39 H 1.08993 * 109.45652 * 181.74849 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5338 2.3429 0.4570 6 7 0.3843 2.2691 1.0937 7 14 2.3366 4.0048 0.1684 8 1 3.6142 3.8167 -0.5647 9 1 1.4266 4.8615 -0.6336 10 1 2.6073 4.6572 1.4747 11 6 2.1974 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4418 13 6 3.2170 -3.0364 1.4412 14 1 4.1277 -2.9308 0.8518 15 6 3.5798 -3.4188 2.8788 16 6 4.2915 -4.7744 2.8738 17 6 3.3824 -5.8201 2.2243 18 7 3.0647 -5.4088 0.8508 19 6 2.3076 -6.4546 0.1499 20 6 2.3389 -4.1324 0.8331 21 1 -0.3633 0.0754 1.0249 22 1 -0.3634 0.8499 -0.5777 23 1 -0.3634 -0.9252 -0.4471 24 1 -0.0463 3.0776 1.4128 25 1 3.1499 -1.1382 -0.5143 26 1 1.6084 -2.0282 -0.5147 27 1 1.5001 -1.8415 1.9555 28 1 3.0416 -0.9515 1.9558 29 1 4.2407 -2.6619 3.3013 30 1 2.6718 -3.4862 3.4780 31 1 4.5145 -5.0722 3.8984 32 1 5.2193 -4.6963 2.3069 33 1 2.4607 -5.9076 2.7995 34 1 3.8919 -6.7835 2.2062 35 1 2.1502 -6.1563 -0.8866 36 1 2.8677 -7.3893 0.1779 37 1 1.3432 -6.5941 0.6383 38 1 1.4221 -4.2278 1.4150 39 1 2.0907 -3.8700 -0.1953 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258969626.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:35 Heat of formation + Delta-G solvation = 8.939510 kcal Electronic energy + Delta-G solvation = -16295.811946 eV Core-core repulsion = 13852.349048 eV Total energy + Delta-G solvation = -2443.462898 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.05441 -35.85944 -33.93580 -32.24649 -30.70000 -27.57347 -26.70091 -25.75888 -23.93320 -22.68037 -21.30537 -19.91243 -19.41922 -16.62520 -15.70444 -15.23292 -14.74383 -14.48614 -14.28150 -13.63813 -13.44304 -13.26570 -12.82939 -12.50002 -12.15585 -12.11114 -11.89603 -11.54023 -11.01405 -10.95579 -10.83271 -10.72691 -10.48594 -10.39967 -10.10991 -10.05471 -9.94037 -9.64146 -9.52690 -8.47459 -8.27960 -6.65641 -5.64733 -3.09402 3.41871 3.48847 3.51184 3.99412 4.56692 4.90476 4.97299 5.05636 5.23171 5.41203 5.43697 5.47894 5.55264 5.57307 5.72743 5.80872 5.82230 5.89589 5.96324 6.02175 6.12984 6.20854 6.35181 6.39866 6.47678 6.66029 6.69440 6.83819 7.02665 7.13176 7.14820 7.26461 7.46407 7.80826 7.88320 8.48868 9.32795 9.97087 10.46164 11.40819 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.044470 B = 0.005709 C = 0.005389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.485674 B = 4903.544467 C = 5194.526347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.606 5.606 3 C -0.248 4.248 4 H 0.068 0.932 5 C -0.002 4.002 6 N -0.911 5.911 7 Si 0.903 3.097 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.153 3.847 12 C -0.130 4.130 13 C -0.082 4.082 14 H 0.074 0.926 15 C -0.117 4.117 16 C -0.116 4.116 17 C 0.056 3.944 18 N -0.545 5.545 19 C 0.026 3.974 20 C 0.061 3.939 21 H 0.026 0.974 22 H 0.043 0.957 23 H -0.006 1.006 24 H 0.250 0.750 25 H 0.041 0.959 26 H 0.034 0.966 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.029 0.971 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.022 0.978 38 H 0.030 0.970 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.368 -15.263 1.514 15.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.329 5.329 3 C -0.378 4.378 4 H 0.086 0.914 5 C -0.200 4.200 6 N -0.557 5.557 7 Si 0.733 3.267 8 H -0.204 1.204 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.026 3.974 12 C -0.171 4.171 13 C -0.101 4.101 14 H 0.092 0.908 15 C -0.154 4.154 16 C -0.154 4.154 17 C -0.072 4.072 18 N -0.270 5.270 19 C -0.123 4.123 20 C -0.066 4.066 21 H 0.044 0.956 22 H 0.062 0.938 23 H 0.013 0.987 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.040 0.960 38 H 0.049 0.951 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.687 -15.056 1.301 15.822 hybrid contribution -0.492 0.834 0.502 1.090 sum 4.195 -14.222 1.803 14.937 Atomic orbital electron populations 1.20762 0.82753 0.95331 0.99097 1.44000 1.01870 1.00887 1.86101 1.19279 0.97837 0.85513 1.35129 0.91403 1.25015 0.97773 0.98445 0.98724 1.70079 1.17992 1.26743 1.40924 0.86200 0.78649 0.84469 0.77368 1.20352 1.21717 1.21822 1.20865 0.95472 0.87761 0.93293 1.22261 0.99288 0.94182 1.01398 1.21216 0.99018 0.94579 0.95300 0.90788 1.21650 1.00083 0.96330 0.97363 1.21591 0.99063 0.95114 0.99642 1.22076 0.98250 0.98262 0.88600 1.61944 1.45741 1.03479 1.15815 1.22334 0.95874 0.94941 0.99125 1.22231 0.94613 0.88451 1.01300 0.95573 0.93844 0.98743 0.93958 0.94050 0.94732 0.93064 0.91741 0.91778 0.92544 0.92002 0.91250 0.95270 0.91334 0.91330 0.91779 0.95963 0.95149 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.23 9.01 59.85 0.54 4.77 16 2 N -0.61 -15.77 2.93 -181.12 -0.53 -16.30 16 3 C -0.25 -7.00 9.67 -15.06 -0.15 -7.15 16 4 H 0.07 1.88 7.84 -52.49 -0.41 1.47 16 5 C 0.00 -0.06 5.13 -17.43 -0.09 -0.15 16 6 N -0.91 -27.23 10.59 55.49 0.59 -26.65 16 7 Si 0.90 22.31 29.57 -169.99 -5.03 17.29 16 8 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 9 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 10 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 11 C 0.15 3.24 5.47 -4.04 -0.02 3.21 16 12 C -0.13 -2.49 5.01 -26.73 -0.13 -2.63 16 13 C -0.08 -1.25 2.35 -90.54 -0.21 -1.47 16 14 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 15 C -0.12 -1.60 5.29 -26.61 -0.14 -1.74 16 16 C -0.12 -1.35 6.09 -26.65 -0.16 -1.51 16 17 C 0.06 0.65 5.46 -3.84 -0.02 0.63 16 18 N -0.55 -7.05 4.91 -242.96 -1.19 -8.24 16 19 C 0.03 0.27 9.59 60.06 0.58 0.85 16 20 C 0.06 0.88 4.48 -3.83 -0.02 0.87 16 21 H 0.03 0.72 7.42 -51.93 -0.39 0.33 16 22 H 0.04 1.19 7.19 -51.93 -0.37 0.81 16 23 H -0.01 -0.13 7.84 -51.93 -0.41 -0.54 16 24 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.04 0.87 8.03 -51.93 -0.42 0.45 16 26 H 0.03 0.67 6.31 -51.93 -0.33 0.34 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 37 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 1.15 6.59 -51.93 -0.34 0.81 16 LS Contribution 302.15 15.07 4.55 4.55 Total: -1.00 -30.06 302.15 -8.73 -38.79 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -7.29 Total: -5.13 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 0.17 Total: -4.31 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -1.14 Total: -51.19 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.06 -8.73 -38.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258969626.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.728 kcal (2) G-P(sol) polarization free energy of solvation -30.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds