Wall clock time and date at job start Mon Mar 30 2020 03:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36936 * 119.99964 * 2 1 4 4 H 1.08000 * 119.99664 * 202.34320 * 3 2 1 5 5 C 1.38811 * 120.00084 * 22.34612 * 3 2 1 6 6 N 1.31616 * 120.00132 * 11.35382 * 5 3 2 7 7 Si 1.86807 * 119.99787 * 191.35522 * 5 3 2 8 8 H 1.48496 * 109.47230 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.46835 * 120.00125 * 7 5 3 10 10 H 1.48499 * 109.46759 * 239.99618 * 7 5 3 11 11 C 1.46497 * 119.99756 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.47022 * 269.99333 * 11 2 1 13 13 C 1.53004 * 109.47077 * 179.97438 * 12 11 2 14 14 H 1.08996 * 109.49806 * 55.00498 * 13 12 11 15 15 C 1.53117 * 109.53314 * 175.10275 * 13 12 11 16 16 C 1.53115 * 109.15830 * 177.61871 * 15 13 12 17 17 C 1.53034 * 109.27983 * 302.34111 * 16 15 13 18 18 N 1.46847 * 109.52129 * 59.18181 * 17 16 15 19 19 C 1.46900 * 111.00113 * 174.16135 * 18 17 16 20 20 C 1.46850 * 111.20024 * 298.25800 * 18 17 16 21 21 H 1.09000 * 109.46745 * 274.20856 * 1 2 3 22 22 H 1.08997 * 109.47297 * 34.20575 * 1 2 3 23 23 H 1.08993 * 109.47358 * 154.21006 * 1 2 3 24 24 H 0.97002 * 120.00278 * 180.02562 * 6 5 3 25 25 H 1.09002 * 109.47179 * 150.00267 * 11 2 1 26 26 H 1.08994 * 109.47786 * 29.99834 * 11 2 1 27 27 H 1.09002 * 109.46381 * 60.00445 * 12 11 2 28 28 H 1.08996 * 109.46977 * 300.00363 * 12 11 2 29 29 H 1.09002 * 109.52509 * 297.52032 * 15 13 12 30 30 H 1.08997 * 109.52608 * 57.70941 * 15 13 12 31 31 H 1.09007 * 109.50418 * 182.40560 * 16 15 13 32 32 H 1.09004 * 109.50897 * 62.28570 * 16 15 13 33 33 H 1.09000 * 109.46311 * 299.16846 * 17 16 15 34 34 H 1.09003 * 109.46416 * 179.19389 * 17 16 15 35 35 H 1.09002 * 109.47046 * 184.20808 * 19 18 17 36 36 H 1.09004 * 109.47341 * 304.20697 * 19 18 17 37 37 H 1.09000 * 109.47162 * 64.21212 * 19 18 17 38 38 H 1.08998 * 109.46193 * 301.72941 * 20 18 17 39 39 H 1.08993 * 109.45652 * 181.74849 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5338 2.3429 0.4570 6 7 0.3843 2.2691 1.0937 7 14 2.3366 4.0048 0.1684 8 1 3.6142 3.8167 -0.5647 9 1 1.4266 4.8615 -0.6336 10 1 2.6073 4.6572 1.4747 11 6 2.1974 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4418 13 6 3.2170 -3.0364 1.4412 14 1 4.1277 -2.9308 0.8518 15 6 3.5798 -3.4188 2.8788 16 6 4.2915 -4.7744 2.8738 17 6 3.3824 -5.8201 2.2243 18 7 3.0647 -5.4088 0.8508 19 6 2.3076 -6.4546 0.1499 20 6 2.3389 -4.1324 0.8331 21 1 -0.3633 0.0754 1.0249 22 1 -0.3634 0.8499 -0.5777 23 1 -0.3634 -0.9252 -0.4471 24 1 -0.0463 3.0776 1.4128 25 1 3.1499 -1.1382 -0.5143 26 1 1.6084 -2.0282 -0.5147 27 1 1.5001 -1.8415 1.9555 28 1 3.0416 -0.9515 1.9558 29 1 4.2407 -2.6619 3.3013 30 1 2.6718 -3.4862 3.4780 31 1 4.5145 -5.0722 3.8984 32 1 5.2193 -4.6963 2.3069 33 1 2.4607 -5.9076 2.7995 34 1 3.8919 -6.7835 2.2062 35 1 2.1502 -6.1563 -0.8866 36 1 2.8677 -7.3893 0.1779 37 1 1.3432 -6.5941 0.6383 38 1 1.4221 -4.2278 1.4150 39 1 2.0907 -3.8700 -0.1953 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258969626.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:35 Heat of formation + Delta-G solvation = -9.305351 kcal Electronic energy + Delta-G solvation = -16296.603103 eV Core-core repulsion = 13852.349048 eV Total energy + Delta-G solvation = -2444.254055 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.16458 -37.68796 -35.31122 -33.66367 -32.45513 -29.12898 -27.88742 -27.65212 -25.50888 -23.83069 -22.79331 -21.50466 -20.58907 -18.72984 -16.95238 -16.59627 -16.39054 -15.58987 -15.48228 -15.33368 -15.04449 -14.79051 -14.21967 -13.83782 -13.71667 -13.19566 -13.14328 -13.00693 -12.75519 -12.68080 -12.42916 -12.27434 -12.06816 -12.01771 -11.85224 -11.58560 -11.43056 -11.16526 -11.01658 -10.62603 -9.26247 -8.76578 -7.81892 -5.29303 1.46048 1.46724 1.57766 2.51980 3.02295 3.31925 3.67698 3.87416 3.95265 4.01783 4.18055 4.43303 4.45441 4.55493 4.56995 4.63918 4.68033 4.75956 4.80058 4.83601 4.89904 4.99821 5.03040 5.05916 5.12154 5.15298 5.26406 5.33551 5.41010 5.48678 5.58708 5.65764 5.72688 6.14462 6.20572 6.35108 7.16880 7.89819 8.33349 9.22493 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.044470 B = 0.005709 C = 0.005389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.485674 B = 4903.544467 C = 5194.526347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.624 5.624 3 C -0.259 4.259 4 H 0.070 0.930 5 C -0.057 4.057 6 N -0.943 5.943 7 Si 0.969 3.031 8 H -0.266 1.266 9 H -0.290 1.290 10 H -0.292 1.292 11 C 0.151 3.849 12 C -0.114 4.114 13 C -0.072 4.072 14 H 0.072 0.928 15 C -0.116 4.116 16 C -0.110 4.110 17 C 0.054 3.946 18 N -0.555 5.555 19 C 0.024 3.976 20 C 0.068 3.932 21 H 0.000 1.000 22 H 0.017 0.983 23 H 0.028 0.972 24 H 0.247 0.753 25 H 0.043 0.957 26 H 0.055 0.945 27 H 0.035 0.965 28 H 0.037 0.963 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.027 0.973 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.023 0.977 38 H 0.022 0.978 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.532 -16.740 1.257 17.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.347 5.347 3 C -0.389 4.389 4 H 0.088 0.912 5 C -0.251 4.251 6 N -0.590 5.590 7 Si 0.797 3.203 8 H -0.190 1.190 9 H -0.217 1.217 10 H -0.219 1.219 11 C 0.026 3.974 12 C -0.155 4.155 13 C -0.092 4.092 14 H 0.091 0.909 15 C -0.154 4.154 16 C -0.148 4.148 17 C -0.074 4.074 18 N -0.279 5.279 19 C -0.123 4.123 20 C -0.060 4.060 21 H 0.018 0.982 22 H 0.036 0.964 23 H 0.046 0.954 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.042 0.958 38 H 0.041 0.959 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.874 -16.571 1.035 17.612 hybrid contribution -0.847 1.218 0.564 1.587 sum 5.027 -15.354 1.599 16.235 Atomic orbital electron populations 1.20512 0.82931 0.95816 0.97346 1.44275 1.02172 1.02003 1.86238 1.19599 0.98028 0.86703 1.34561 0.91217 1.25800 0.98509 1.01902 0.98913 1.70249 1.19388 1.27289 1.42098 0.85169 0.78112 0.79962 0.77039 1.19004 1.21725 1.21924 1.21027 0.95400 0.86374 0.94623 1.21996 0.98547 0.95635 0.99322 1.21068 0.98422 0.92876 0.96804 0.90938 1.21631 1.00116 0.97853 0.95827 1.21564 0.98644 0.93590 1.01018 1.22166 0.98341 0.99092 0.87776 1.61950 1.45780 1.03330 1.16861 1.22403 0.96038 0.94995 0.98905 1.22069 0.94115 0.89215 1.00616 0.98154 0.96437 0.95370 0.94391 0.93810 0.92643 0.94606 0.94429 0.92123 0.93072 0.89949 0.91238 0.95436 0.89217 0.91190 0.89916 0.95843 0.95936 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.27 9.01 127.77 1.15 10.42 16 2 N -0.62 -32.62 2.93 -726.95 -2.13 -34.74 16 3 C -0.26 -14.69 9.67 84.03 0.81 -13.88 16 4 H 0.07 3.85 7.84 -2.91 -0.02 3.83 16 5 C -0.06 -3.28 5.13 84.86 0.44 -2.85 16 6 N -0.94 -57.48 10.59 21.65 0.23 -57.25 16 7 Si 0.97 46.18 29.57 68.60 2.03 48.21 16 8 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 9 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 10 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 11 C 0.15 6.32 5.47 86.38 0.47 6.79 16 12 C -0.11 -4.39 5.01 30.60 0.15 -4.24 16 13 C -0.07 -2.15 2.35 -10.74 -0.03 -2.18 16 14 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 15 C -0.12 -3.06 5.29 30.67 0.16 -2.89 16 16 C -0.11 -2.29 6.09 30.64 0.19 -2.10 16 17 C 0.05 1.09 5.46 86.32 0.47 1.57 16 18 N -0.55 -13.00 4.91 -922.59 -4.53 -17.53 16 19 C 0.02 0.46 9.59 127.69 1.22 1.69 16 20 C 0.07 1.85 4.48 86.33 0.39 2.24 16 21 H 0.00 0.01 7.42 -2.39 -0.02 -0.01 16 22 H 0.02 0.95 7.19 -2.39 -0.02 0.94 16 23 H 0.03 1.23 7.84 -2.39 -0.02 1.21 16 24 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 25 H 0.04 1.80 8.03 -2.39 -0.02 1.78 16 26 H 0.06 2.08 6.31 -2.39 -0.02 2.06 16 27 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 30 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.09 1.47 8.09 -2.39 -0.02 1.45 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 1.25 8.09 -2.39 -0.02 1.23 16 37 H 0.02 0.43 8.14 -2.39 -0.02 0.42 16 38 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.07 2.05 6.59 -2.39 -0.02 2.04 16 Total: -1.00 -64.06 302.15 2.00 -62.05 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 0.97 Total: 4.71 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: 5.43 Total: -5.44 kcal Atomic # 7 Polarization: -103.10 SS G_CDS: -6.43 Total: -109.53 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -64.06 2.00 -62.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258969626.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.749 kcal (2) G-P(sol) polarization free energy of solvation -64.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds