Wall clock time and date at job start Mon Mar 30 2020 03:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46897 * 111.00145 * 2 1 4 4 H 1.09004 * 109.47501 * 184.31384 * 3 2 1 5 5 C 1.52997 * 109.46992 * 304.30993 * 3 2 1 6 6 C 1.50704 * 109.47329 * 294.99868 * 5 3 2 7 7 H 1.08002 * 119.99851 * 0.02562 * 6 5 3 8 8 C 1.37878 * 120.00048 * 180.02562 * 6 5 3 9 9 N 1.31511 * 119.99901 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99568 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46540 * 179.97438 * 10 8 6 12 12 H 1.48492 * 109.47189 * 299.99776 * 10 8 6 13 13 H 1.48500 * 109.46937 * 60.00356 * 10 8 6 14 14 C 1.52992 * 109.47344 * 64.30963 * 3 2 1 15 15 H 1.09000 * 109.50656 * 294.86779 * 14 3 2 16 16 C 1.53123 * 109.50854 * 174.78484 * 14 3 2 17 17 C 1.53120 * 109.16149 * 182.44475 * 16 14 3 18 18 C 1.53029 * 109.31106 * 57.59392 * 17 16 14 19 19 N 1.46842 * 109.52743 * 300.84491 * 18 17 16 20 20 C 1.46896 * 111.00212 * 185.83819 * 19 18 17 21 21 C 1.46840 * 111.20088 * 61.73735 * 19 18 17 22 22 H 1.08998 * 109.46910 * 66.17041 * 1 2 3 23 23 H 1.09000 * 109.47182 * 186.16757 * 1 2 3 24 24 H 1.09001 * 109.47426 * 306.16844 * 1 2 3 25 25 H 1.00904 * 111.00360 * 236.04726 * 2 1 3 26 26 H 1.09005 * 109.47570 * 175.00301 * 5 3 2 27 27 H 1.09001 * 109.47257 * 55.00117 * 5 3 2 28 28 H 0.97000 * 119.99915 * 179.97438 * 9 8 6 29 29 H 1.08999 * 109.52462 * 302.31154 * 16 14 3 30 30 H 1.09002 * 109.51781 * 62.50234 * 16 14 3 31 31 H 1.09006 * 109.46661 * 297.65440 * 17 16 14 32 32 H 1.09006 * 109.50386 * 177.56273 * 17 16 14 33 33 H 1.09004 * 109.46656 * 180.82292 * 18 17 16 34 34 H 1.09004 * 109.46308 * 60.86323 * 18 17 16 35 35 H 1.08996 * 109.47449 * 295.79032 * 20 19 18 36 36 H 1.09007 * 109.47219 * 55.79107 * 20 19 18 37 37 H 1.09000 * 109.47537 * 175.78343 * 20 19 18 38 38 H 1.08998 * 109.46381 * 178.24221 * 21 19 18 39 39 H 1.08999 * 109.46174 * 58.27572 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 3.0823 1.3434 -0.0773 5 6 1.4191 2.1389 -1.1915 6 6 1.9147 1.5216 -2.4739 7 1 2.5743 0.6671 -2.4422 8 6 1.5259 2.0478 -3.6876 9 7 0.7222 3.0881 -3.7261 10 14 2.1397 1.2822 -5.2771 11 1 1.5803 2.0272 -6.4335 12 1 3.6227 1.3460 -5.3169 13 1 1.7031 -0.1356 -5.3444 14 6 1.5944 2.0716 1.2998 15 1 0.5105 2.1814 1.3347 16 6 2.2504 3.4540 1.3593 17 6 1.8936 4.1227 2.6898 18 6 2.3526 3.2294 3.8443 19 7 1.6961 1.9198 3.7426 20 6 2.0057 1.0836 4.9100 21 6 2.0622 1.2378 2.4948 22 1 -0.3633 0.4152 -0.9401 23 1 -0.3633 -1.0217 0.1104 24 1 -0.3634 0.6065 0.8296 25 1 1.8306 -0.5261 -0.7814 26 1 1.7387 3.1799 -1.1422 27 1 0.3305 2.0912 -1.1622 28 1 0.4490 3.4585 -4.5799 29 1 3.3326 3.3472 1.2846 30 1 1.8859 4.0658 0.5341 31 1 0.8144 4.2653 2.7468 32 1 2.3930 5.0893 2.7567 33 1 2.0868 3.6962 4.7928 34 1 3.4337 3.0985 3.7947 35 1 3.0740 0.8685 4.9298 36 1 1.7246 1.6126 5.8207 37 1 1.4480 0.1493 4.8459 38 1 1.5853 0.2581 2.4630 39 1 3.1445 1.1162 2.4514 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259240800.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:47 Heat of formation + Delta-G solvation = -12.752207 kcal Electronic energy + Delta-G solvation = -16691.492947 eV Core-core repulsion = 14247.089425 eV Total energy + Delta-G solvation = -2444.403522 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.07349 -36.37760 -33.00637 -32.61065 -30.47175 -28.62173 -26.41545 -25.33517 -23.86201 -22.47810 -22.03948 -19.62613 -18.58543 -16.45925 -15.48841 -15.18645 -14.86115 -14.48827 -14.25985 -13.83835 -13.64640 -13.13242 -12.67784 -12.45642 -12.15161 -11.97580 -11.75254 -11.41965 -11.38976 -11.16207 -10.88510 -10.71952 -10.63455 -10.28456 -10.08114 -9.85816 -9.73156 -9.47065 -8.98793 -8.38103 -8.09363 -7.39490 -6.03513 -4.06484 3.29979 3.35047 3.37045 4.17822 4.42627 5.04816 5.15351 5.24137 5.31909 5.40712 5.47151 5.58244 5.60544 5.78789 5.88040 5.92307 5.95774 6.10186 6.14351 6.21498 6.26680 6.37897 6.42899 6.53042 6.61181 6.74181 6.79354 6.94846 7.02371 7.33592 7.38147 7.51204 7.70174 7.88841 8.06399 8.27554 8.40040 9.00374 9.57815 11.07337 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.041255 B = 0.006798 C = 0.006242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.549386 B = 4117.655798 C = 4484.411541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.685 5.685 3 C 0.092 3.908 4 H 0.063 0.937 5 C -0.006 4.006 6 C -0.522 4.522 7 H 0.053 0.947 8 C 0.060 3.940 9 N -0.893 5.893 10 Si 0.890 3.110 11 H -0.288 1.288 12 H -0.277 1.277 13 H -0.277 1.277 14 C -0.072 4.072 15 H 0.071 0.929 16 C -0.117 4.117 17 C -0.115 4.115 18 C 0.057 3.943 19 N -0.548 5.548 20 C 0.028 3.972 21 C 0.072 3.928 22 H 0.038 0.962 23 H 0.046 0.954 24 H 0.056 0.944 25 H 0.341 0.659 26 H 0.021 0.979 27 H 0.022 0.978 28 H 0.261 0.739 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.027 0.973 35 H 0.020 0.980 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.032 -1.610 13.034 13.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.314 5.314 3 C -0.018 4.018 4 H 0.081 0.919 5 C -0.044 4.044 6 C -0.560 4.560 7 H 0.071 0.929 8 C -0.142 4.142 9 N -0.532 5.532 10 Si 0.717 3.283 11 H -0.213 1.213 12 H -0.203 1.203 13 H -0.203 1.203 14 C -0.091 4.091 15 H 0.089 0.911 16 C -0.155 4.155 17 C -0.153 4.153 18 C -0.071 4.071 19 N -0.272 5.272 20 C -0.121 4.121 21 C -0.055 4.055 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.158 0.842 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.038 0.962 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 1.483 -1.493 13.598 13.760 hybrid contribution 1.002 -0.180 -1.932 2.184 sum 2.485 -1.673 11.666 12.044 Atomic orbital electron populations 1.22139 0.89584 0.99861 1.00951 1.60838 1.07297 1.14492 1.48758 1.21654 0.98381 0.88082 0.93715 0.91853 1.19771 0.96805 0.96140 0.91726 1.21142 1.29130 1.14606 0.91105 0.92930 1.24990 0.95079 0.94979 0.99113 1.69953 1.34420 1.23082 1.25722 0.86701 0.79124 0.79328 0.83100 1.21346 1.20285 1.20291 1.21188 1.00468 0.93699 0.93729 0.91054 1.21661 1.00103 0.96810 0.96951 1.21583 1.01763 0.97422 0.94553 1.22069 0.95809 0.90406 0.98819 1.61955 1.58963 1.03516 1.02775 1.22298 0.98556 0.97834 0.93365 1.22071 0.97719 0.98004 0.87694 0.94317 0.93477 0.92532 0.84216 0.96067 0.96011 0.92965 0.92720 0.90775 0.91382 0.92034 0.91606 0.95434 0.96182 0.92034 0.91521 0.89684 0.95739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.82 60.06 0.59 1.04 16 2 N -0.68 -13.00 5.76 -114.02 -0.66 -13.66 16 3 C 0.09 1.86 2.06 -67.72 -0.14 1.72 16 4 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 5 C -0.01 -0.16 3.98 -27.88 -0.11 -0.27 16 6 C -0.52 -14.17 8.61 -34.44 -0.30 -14.47 16 7 H 0.05 1.39 7.16 -52.49 -0.38 1.01 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 10 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 C -0.07 -1.27 1.53 -90.54 -0.14 -1.41 16 15 H 0.07 1.37 6.63 -51.93 -0.34 1.02 16 16 C -0.12 -1.97 4.99 -26.61 -0.13 -2.10 16 17 C -0.12 -1.62 6.09 -26.65 -0.16 -1.79 16 18 C 0.06 0.76 5.46 -3.84 -0.02 0.74 16 19 N -0.55 -7.92 4.91 -242.97 -1.19 -9.11 16 20 C 0.03 0.33 9.59 60.06 0.58 0.91 16 21 C 0.07 1.16 4.52 -3.84 -0.02 1.14 16 22 H 0.04 0.82 6.50 -51.93 -0.34 0.48 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 1.01 6.25 -51.93 -0.32 0.69 16 25 H 0.34 6.69 7.86 -39.29 -0.31 6.38 16 26 H 0.02 0.56 6.41 -51.93 -0.33 0.23 16 27 H 0.02 0.58 6.20 -51.93 -0.32 0.26 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.07 1.38 6.60 -51.93 -0.34 1.03 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 34 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.06 0.63 8.09 -51.92 -0.42 0.21 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 1.42 7.49 -51.93 -0.39 1.03 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 295.79 15.07 4.46 4.46 Total: -1.00 -28.47 295.79 -8.48 -36.95 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -6.86 Total: 3.57 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 0.05 Total: -12.89 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -1.11 Total: -48.48 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.47 -8.48 -36.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259240800.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.201 kcal (2) G-P(sol) polarization free energy of solvation -28.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds