Wall clock time and date at job start Mon Mar 30 2020 03:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46897 * 111.00145 * 2 1 4 4 H 1.09004 * 109.47501 * 184.31384 * 3 2 1 5 5 C 1.52997 * 109.46992 * 304.30993 * 3 2 1 6 6 C 1.50704 * 109.47329 * 294.99868 * 5 3 2 7 7 H 1.08002 * 119.99851 * 0.02562 * 6 5 3 8 8 C 1.37878 * 120.00048 * 180.02562 * 6 5 3 9 9 N 1.31511 * 119.99901 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99568 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46540 * 179.97438 * 10 8 6 12 12 H 1.48492 * 109.47189 * 299.99776 * 10 8 6 13 13 H 1.48500 * 109.46937 * 60.00356 * 10 8 6 14 14 C 1.52992 * 109.47344 * 64.30963 * 3 2 1 15 15 H 1.09000 * 109.50656 * 294.86779 * 14 3 2 16 16 C 1.53123 * 109.50854 * 174.78484 * 14 3 2 17 17 C 1.53120 * 109.16149 * 182.44475 * 16 14 3 18 18 C 1.53029 * 109.31106 * 57.59392 * 17 16 14 19 19 N 1.46842 * 109.52743 * 300.84491 * 18 17 16 20 20 C 1.46896 * 111.00212 * 185.83819 * 19 18 17 21 21 C 1.46840 * 111.20088 * 61.73735 * 19 18 17 22 22 H 1.08998 * 109.46910 * 66.17041 * 1 2 3 23 23 H 1.09000 * 109.47182 * 186.16757 * 1 2 3 24 24 H 1.09001 * 109.47426 * 306.16844 * 1 2 3 25 25 H 1.00904 * 111.00360 * 236.04726 * 2 1 3 26 26 H 1.09005 * 109.47570 * 175.00301 * 5 3 2 27 27 H 1.09001 * 109.47257 * 55.00117 * 5 3 2 28 28 H 0.97000 * 119.99915 * 179.97438 * 9 8 6 29 29 H 1.08999 * 109.52462 * 302.31154 * 16 14 3 30 30 H 1.09002 * 109.51781 * 62.50234 * 16 14 3 31 31 H 1.09006 * 109.46661 * 297.65440 * 17 16 14 32 32 H 1.09006 * 109.50386 * 177.56273 * 17 16 14 33 33 H 1.09004 * 109.46656 * 180.82292 * 18 17 16 34 34 H 1.09004 * 109.46308 * 60.86323 * 18 17 16 35 35 H 1.08996 * 109.47449 * 295.79032 * 20 19 18 36 36 H 1.09007 * 109.47219 * 55.79107 * 20 19 18 37 37 H 1.09000 * 109.47537 * 175.78343 * 20 19 18 38 38 H 1.08998 * 109.46381 * 178.24221 * 21 19 18 39 39 H 1.08999 * 109.46174 * 58.27572 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 3.0823 1.3434 -0.0773 5 6 1.4191 2.1389 -1.1915 6 6 1.9147 1.5216 -2.4739 7 1 2.5743 0.6671 -2.4422 8 6 1.5259 2.0478 -3.6876 9 7 0.7222 3.0881 -3.7261 10 14 2.1397 1.2822 -5.2771 11 1 1.5803 2.0272 -6.4335 12 1 3.6227 1.3460 -5.3169 13 1 1.7031 -0.1356 -5.3444 14 6 1.5944 2.0716 1.2998 15 1 0.5105 2.1814 1.3347 16 6 2.2504 3.4540 1.3593 17 6 1.8936 4.1227 2.6898 18 6 2.3526 3.2294 3.8443 19 7 1.6961 1.9198 3.7426 20 6 2.0057 1.0836 4.9100 21 6 2.0622 1.2378 2.4948 22 1 -0.3633 0.4152 -0.9401 23 1 -0.3633 -1.0217 0.1104 24 1 -0.3634 0.6065 0.8296 25 1 1.8306 -0.5261 -0.7814 26 1 1.7387 3.1799 -1.1422 27 1 0.3305 2.0912 -1.1622 28 1 0.4490 3.4585 -4.5799 29 1 3.3326 3.3472 1.2846 30 1 1.8859 4.0658 0.5341 31 1 0.8144 4.2653 2.7468 32 1 2.3930 5.0893 2.7567 33 1 2.0868 3.6962 4.7928 34 1 3.4337 3.0985 3.7947 35 1 3.0740 0.8685 4.9298 36 1 1.7246 1.6126 5.8207 37 1 1.4480 0.1493 4.8459 38 1 1.5853 0.2581 2.4630 39 1 3.1445 1.1162 2.4514 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259240800.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:47 Heat of formation + Delta-G solvation = -32.192763 kcal Electronic energy + Delta-G solvation = -16692.335953 eV Core-core repulsion = 14247.089425 eV Total energy + Delta-G solvation = -2445.246528 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.42396 -37.88005 -34.74088 -34.23425 -31.80774 -30.49475 -27.54893 -27.05029 -25.54650 -23.84262 -23.48930 -20.95848 -20.17266 -18.51735 -17.00166 -16.63257 -16.52803 -15.89344 -15.47071 -15.32244 -15.05641 -14.71003 -14.21187 -13.98092 -13.73298 -13.25789 -13.14956 -12.96011 -12.88813 -12.68230 -12.54442 -12.36061 -12.08047 -11.96225 -11.71472 -11.49199 -11.22576 -11.06707 -10.85144 -10.54489 -9.19668 -9.08342 -8.19886 -6.30215 1.38285 1.40082 1.47727 2.38957 3.08261 3.13163 3.57404 3.96404 4.00277 4.07316 4.22819 4.44262 4.57492 4.60602 4.64583 4.67626 4.68943 4.75584 4.84919 4.88226 5.00823 5.05035 5.06722 5.08815 5.17225 5.19478 5.23376 5.41435 5.48169 5.51402 5.67952 5.81668 6.19559 6.21059 6.27837 6.33710 6.66318 6.86739 7.38654 8.91293 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.041255 B = 0.006798 C = 0.006242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.549386 B = 4117.655798 C = 4484.411541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.672 5.672 3 C 0.103 3.897 4 H 0.058 0.942 5 C 0.004 3.996 6 C -0.533 4.533 7 H 0.059 0.941 8 C 0.003 3.997 9 N -0.932 5.932 10 Si 0.959 3.041 11 H -0.287 1.287 12 H -0.269 1.269 13 H -0.267 1.267 14 C -0.064 4.064 15 H 0.054 0.946 16 C -0.116 4.116 17 C -0.110 4.110 18 C 0.058 3.942 19 N -0.561 5.561 20 C 0.028 3.972 21 C 0.086 3.914 22 H 0.004 0.996 23 H 0.075 0.925 24 H 0.060 0.940 25 H 0.338 0.662 26 H -0.006 1.006 27 H -0.005 1.005 28 H 0.261 0.739 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.031 0.969 35 H 0.024 0.976 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.871 -2.585 14.297 14.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.300 5.300 3 C -0.008 4.008 4 H 0.076 0.924 5 C -0.034 4.034 6 C -0.571 4.571 7 H 0.078 0.922 8 C -0.195 4.195 9 N -0.573 5.573 10 Si 0.784 3.216 11 H -0.213 1.213 12 H -0.194 1.194 13 H -0.192 1.192 14 C -0.084 4.084 15 H 0.073 0.927 16 C -0.155 4.155 17 C -0.148 4.148 18 C -0.069 4.069 19 N -0.285 5.285 20 C -0.120 4.120 21 C -0.042 4.042 22 H 0.022 0.978 23 H 0.093 0.907 24 H 0.079 0.921 25 H 0.155 0.845 26 H 0.012 0.988 27 H 0.013 0.987 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.049 0.951 35 H 0.043 0.957 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 2.330 -2.482 14.883 15.268 hybrid contribution 0.714 0.143 -2.298 2.410 sum 3.043 -2.340 12.585 13.158 Atomic orbital electron populations 1.22099 0.88984 1.01383 0.99238 1.60891 1.07602 1.13292 1.48216 1.21475 0.97668 0.88346 0.93295 0.92394 1.19636 0.95137 0.95209 0.93434 1.21547 1.28813 1.14649 0.92113 0.92239 1.25887 0.95249 0.95425 1.02896 1.70096 1.35916 1.24685 1.26558 0.85593 0.78807 0.78672 0.78527 1.21266 1.19360 1.19212 1.21052 0.99453 0.94423 0.93426 0.92711 1.21621 0.99873 0.96083 0.97886 1.21554 1.01622 0.98404 0.93212 1.22111 0.95886 0.89685 0.99263 1.61931 1.59491 1.04275 1.02820 1.22363 0.98971 0.97835 0.92816 1.21817 0.97236 0.97300 0.87811 0.97760 0.90663 0.92143 0.84537 0.98758 0.98661 0.92997 0.92599 0.93572 0.92012 0.90060 0.89198 0.95081 0.95691 0.90117 0.91230 0.90172 0.96011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.21 9.82 127.69 1.25 2.46 16 2 N -0.67 -25.28 5.76 -514.65 -2.96 -28.24 16 3 C 0.10 4.23 2.06 44.91 0.09 4.32 16 4 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 5 C 0.00 0.21 3.98 29.85 0.12 0.33 16 6 C -0.53 -29.47 8.61 25.60 0.22 -29.25 16 7 H 0.06 3.14 7.16 -2.91 -0.02 3.12 16 8 C 0.00 0.19 5.46 84.66 0.46 0.65 16 9 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 10 Si 0.96 44.13 29.54 68.60 2.03 46.15 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 13 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 14 C -0.06 -2.29 1.53 -10.74 -0.02 -2.31 16 15 H 0.05 2.14 6.63 -2.39 -0.02 2.12 16 16 C -0.12 -3.95 4.99 30.68 0.15 -3.79 16 17 C -0.11 -2.96 6.09 30.64 0.19 -2.77 16 18 C 0.06 1.39 5.46 86.32 0.47 1.87 16 19 N -0.56 -14.94 4.91 -922.63 -4.53 -19.47 16 20 C 0.03 0.58 9.59 127.69 1.22 1.80 16 21 C 0.09 2.64 4.52 86.33 0.39 3.03 16 22 H 0.00 0.17 6.50 -2.39 -0.02 0.15 16 23 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 24 H 0.06 2.16 6.25 -2.39 -0.01 2.15 16 25 H 0.34 13.08 7.86 -89.69 -0.70 12.38 16 26 H -0.01 -0.33 6.41 -2.38 -0.02 -0.35 16 27 H 0.00 -0.28 6.20 -2.39 -0.01 -0.29 16 28 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.05 1.80 6.60 -2.39 -0.02 1.78 16 31 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.09 1.76 8.09 -2.38 -0.02 1.74 16 34 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.02 0.49 8.14 -2.39 -0.02 0.48 16 36 H 0.08 1.37 8.09 -2.38 -0.02 1.35 16 37 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.08 2.54 7.49 -2.39 -0.02 2.52 16 39 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -61.65 295.79 -0.32 -61.97 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 0.30 Total: 19.67 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 4.56 Total: -23.66 kcal Atomic # 7 Polarization: -96.93 SS G_CDS: -7.21 Total: -104.14 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -61.65 -0.32 -61.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259240800.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.778 kcal (2) G-P(sol) polarization free energy of solvation -61.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds