Wall clock time and date at job start Mon Mar 30 2020 03:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46908 * 110.99567 * 2 1 4 4 C 1.46900 * 111.00121 * 123.95125 * 2 1 3 5 5 H 1.08995 * 109.47346 * 205.14021 * 4 2 1 6 6 C 1.50701 * 109.46861 * 85.13950 * 4 2 1 7 7 H 1.08001 * 120.00208 * 245.73866 * 6 4 2 8 8 C 1.37880 * 119.99661 * 65.46771 * 6 4 2 9 9 N 1.31517 * 119.99674 * 191.77113 * 8 6 4 10 10 Si 1.86794 * 120.00207 * 11.77126 * 8 6 4 11 11 H 1.48492 * 109.47133 * 92.95902 * 10 8 6 12 12 H 1.48509 * 109.46874 * 212.95563 * 10 8 6 13 13 H 1.48500 * 109.46930 * 332.95423 * 10 8 6 14 14 C 1.53004 * 109.47026 * 325.14272 * 4 2 1 15 15 C 1.53123 * 109.52097 * 298.58537 * 14 4 2 16 16 C 1.53032 * 109.27482 * 182.44119 * 15 14 4 17 17 N 1.46850 * 109.52230 * 59.18225 * 16 15 14 18 18 C 1.46903 * 110.99999 * 174.15695 * 17 16 15 19 19 C 1.46848 * 111.19869 * 298.25430 * 17 16 15 20 20 C 1.53030 * 109.52128 * 61.74091 * 19 17 16 21 21 H 1.08992 * 109.47570 * 300.77946 * 1 2 3 22 22 H 1.09003 * 109.47264 * 60.78302 * 1 2 3 23 23 H 1.09003 * 109.46829 * 180.77279 * 1 2 3 24 24 H 1.09003 * 109.46535 * 187.82053 * 3 2 1 25 25 H 1.08993 * 109.47451 * 307.82419 * 3 2 1 26 26 H 1.09007 * 109.46822 * 67.82828 * 3 2 1 27 27 H 0.97001 * 120.00312 * 179.97438 * 9 8 6 28 28 H 1.08998 * 109.52319 * 58.78033 * 14 4 2 29 29 H 1.08998 * 109.50155 * 302.38339 * 15 14 4 30 30 H 1.08999 * 109.50375 * 62.50371 * 15 14 4 31 31 H 1.08997 * 109.46707 * 299.16728 * 16 15 14 32 32 H 1.09007 * 109.46093 * 179.19322 * 16 15 14 33 33 H 1.08991 * 109.47262 * 184.20537 * 18 17 16 34 34 H 1.09004 * 109.47109 * 304.21148 * 18 17 16 35 35 H 1.09005 * 109.46836 * 64.20852 * 18 17 16 36 36 H 1.09004 * 109.45851 * 301.72518 * 19 17 16 37 37 H 1.08998 * 109.46351 * 181.76571 * 19 17 16 38 38 H 1.09002 * 109.50429 * 180.87926 * 20 19 17 39 39 H 1.09007 * 109.50414 * 60.76682 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 2.9941 -0.4070 1.3863 6 6 2.0631 -2.2263 0.7717 7 1 1.4341 -2.9406 1.2822 8 6 2.9239 -2.6496 -0.2187 9 7 2.8236 -3.8695 -0.6999 10 14 4.2326 -1.4906 -0.8769 11 1 5.4964 -1.6923 -0.1239 12 1 4.4640 -1.7719 -2.3167 13 1 3.7777 -0.0865 -0.7137 14 6 1.0731 -0.5848 2.3449 15 6 1.0313 0.8941 2.7395 16 6 0.1561 1.0603 3.9839 17 7 0.7080 0.2574 5.0827 18 6 -0.0258 0.4999 6.3320 19 6 0.7143 -1.1717 4.7450 20 6 1.6060 -1.4045 3.5233 21 1 -0.3634 0.5258 0.8828 22 1 -0.3634 0.5016 -0.8969 23 1 -0.3633 -1.0276 0.0139 24 1 3.0761 1.3459 -0.1398 25 1 1.5372 1.9366 -0.8117 26 1 1.7634 1.8497 0.9518 27 1 3.4289 -4.1673 -1.3969 28 1 0.0689 -0.9235 2.0902 29 1 2.0414 1.2417 2.9559 30 1 0.6126 1.4778 1.9197 31 1 -0.8572 0.7252 3.7627 32 1 0.1358 2.1103 4.2760 33 1 0.4492 -0.0492 7.1449 34 1 -0.0150 1.5661 6.5587 35 1 -1.0563 0.1628 6.2193 36 1 -0.3018 -1.4962 4.5203 37 1 1.0992 -1.7428 5.5899 38 1 1.5981 -2.4631 3.2634 39 1 2.6253 -1.0931 3.7520 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259315452.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:39 Heat of formation + Delta-G solvation = 24.117346 kcal Electronic energy + Delta-G solvation = -17212.908388 eV Core-core repulsion = 14770.103650 eV Total energy + Delta-G solvation = -2442.804738 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.29357 -36.79073 -32.68903 -32.21994 -30.46892 -28.38351 -26.89427 -25.83059 -23.28800 -22.65245 -22.08992 -19.64068 -18.75050 -16.67449 -15.73326 -14.86248 -14.73457 -14.57768 -14.32065 -13.90558 -13.59293 -13.00814 -12.86961 -12.34877 -12.28903 -12.01897 -11.45597 -11.37009 -11.19196 -11.12283 -10.91156 -10.68555 -10.50926 -10.34443 -10.25982 -9.79180 -9.49365 -9.34619 -8.93382 -8.31509 -8.14486 -6.96202 -5.94937 -3.96203 3.48396 3.56691 3.67753 4.15661 4.67622 5.00758 5.16524 5.24481 5.32469 5.46291 5.58432 5.61117 5.69146 5.79256 5.85733 5.88206 5.96146 6.05561 6.08729 6.12908 6.23622 6.25070 6.40204 6.49128 6.54311 6.60873 6.71267 6.83947 6.89427 7.02522 7.20421 7.31556 7.35973 7.80731 8.14873 8.39069 8.66205 9.08169 9.74297 11.15857 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.032825 B = 0.009425 C = 0.008347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.808506 B = 2970.235606 C = 3353.565133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.532 5.532 3 C 0.000 4.000 4 C 0.190 3.810 5 H 0.033 0.967 6 C -0.506 4.506 7 H 0.070 0.930 8 C 0.090 3.910 9 N -0.898 5.898 10 Si 0.872 3.128 11 H -0.294 1.294 12 H -0.297 1.297 13 H -0.232 1.232 14 C -0.099 4.099 15 C -0.125 4.125 16 C 0.059 3.941 17 N -0.543 5.543 18 C 0.026 3.974 19 C 0.055 3.945 20 C -0.098 4.098 21 H 0.018 0.982 22 H 0.041 0.959 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.046 0.954 26 H 0.028 0.972 27 H 0.261 0.739 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.027 0.973 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.020 0.980 36 H 0.027 0.973 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.735 9.844 8.753 13.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.256 5.256 3 C -0.148 4.148 4 C 0.084 3.916 5 H 0.051 0.949 6 C -0.544 4.544 7 H 0.088 0.912 8 C -0.113 4.113 9 N -0.536 5.536 10 Si 0.701 3.299 11 H -0.221 1.221 12 H -0.223 1.223 13 H -0.156 1.156 14 C -0.120 4.120 15 C -0.163 4.163 16 C -0.069 4.069 17 N -0.268 5.268 18 C -0.123 4.123 19 C -0.072 4.072 20 C -0.137 4.137 21 H 0.036 0.964 22 H 0.060 0.940 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.038 0.962 36 H 0.045 0.955 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.027 9.641 8.258 13.318 hybrid contribution -0.452 0.594 0.124 0.757 sum -4.479 10.235 8.382 13.967 Atomic orbital electron populations 1.22291 0.89767 1.01668 0.97972 1.62941 1.06333 1.10321 1.46015 1.22842 1.00951 0.91836 0.99198 1.19746 0.92791 0.94713 0.84302 0.94890 1.20829 1.23456 0.89809 1.20291 0.91235 1.24892 0.97280 0.94502 0.94654 1.69996 1.37564 1.18609 1.27427 0.86951 0.80774 0.84886 0.77330 1.22120 1.22342 1.15601 1.21722 1.00847 0.92568 0.96817 1.22160 0.99944 0.98639 0.95509 1.22093 0.96125 0.96853 0.91803 1.61966 1.53818 1.07915 1.03108 1.22330 0.95769 1.01459 0.92714 1.22213 0.98748 0.87268 0.99011 1.21519 0.98494 1.01516 0.92141 0.96413 0.94027 0.91248 0.91899 0.93554 0.95367 0.93010 0.91796 0.91686 0.90932 0.95512 0.91770 0.91662 0.91903 0.96186 0.95481 0.91453 0.89986 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 8.11 60.06 0.49 1.09 16 2 N -0.53 -11.42 3.58 -244.58 -0.88 -12.29 16 3 C 0.00 0.00 8.61 60.07 0.52 0.52 16 4 C 0.19 4.27 0.84 -68.86 -0.06 4.22 16 5 H 0.03 0.78 6.52 -51.93 -0.34 0.44 16 6 C -0.51 -13.69 8.13 -34.44 -0.28 -13.97 16 7 H 0.07 2.04 7.11 -52.49 -0.37 1.66 16 8 C 0.09 2.59 5.45 -17.82 -0.10 2.49 16 9 N -0.90 -27.52 13.96 55.43 0.77 -26.74 16 10 Si 0.87 21.88 26.89 -169.99 -4.57 17.31 16 11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 13 H -0.23 -5.41 3.54 56.52 0.20 -5.21 16 14 C -0.10 -1.90 1.22 -90.49 -0.11 -2.01 16 15 C -0.13 -2.05 3.51 -26.65 -0.09 -2.15 16 16 C 0.06 0.86 5.46 -3.83 -0.02 0.84 16 17 N -0.54 -8.03 4.91 -242.96 -1.19 -9.22 16 18 C 0.03 0.30 9.59 60.07 0.58 0.88 16 19 C 0.06 0.86 5.46 -3.84 -0.02 0.84 16 20 C -0.10 -1.82 5.06 -26.66 -0.13 -1.95 16 21 H 0.02 0.31 4.77 -51.93 -0.25 0.06 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.07 1.46 7.67 -51.93 -0.40 1.06 16 24 H 0.06 1.21 6.04 -51.93 -0.31 0.89 16 25 H 0.05 0.77 8.10 -51.93 -0.42 0.35 16 26 H 0.03 0.47 4.43 -51.93 -0.23 0.24 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.06 1.28 6.34 -51.93 -0.33 0.95 16 29 H 0.06 1.11 8.01 -51.93 -0.42 0.70 16 30 H 0.07 1.17 4.03 -51.93 -0.21 0.96 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.83 8.09 -51.92 -0.42 0.41 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 35 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 36 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 38 H 0.08 1.66 6.76 -51.93 -0.35 1.31 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 279.80 15.07 4.22 4.22 Total: -1.00 -29.56 279.80 -7.65 -37.20 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.76 Total: -1.27 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 0.76 Total: -9.21 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -1.29 Total: -48.26 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.57 Total: 17.31 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.56 -7.65 -37.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259315452.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.322 kcal (2) G-P(sol) polarization free energy of solvation -29.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds