Wall clock time and date at job start Mon Mar 30 2020 03:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46908 * 110.99567 * 2 1 4 4 C 1.46900 * 111.00121 * 123.95125 * 2 1 3 5 5 H 1.08995 * 109.47346 * 205.14021 * 4 2 1 6 6 C 1.50701 * 109.46861 * 85.13950 * 4 2 1 7 7 H 1.08001 * 120.00208 * 245.73866 * 6 4 2 8 8 C 1.37880 * 119.99661 * 65.46771 * 6 4 2 9 9 N 1.31517 * 119.99674 * 191.77113 * 8 6 4 10 10 Si 1.86794 * 120.00207 * 11.77126 * 8 6 4 11 11 H 1.48492 * 109.47133 * 92.95902 * 10 8 6 12 12 H 1.48509 * 109.46874 * 212.95563 * 10 8 6 13 13 H 1.48500 * 109.46930 * 332.95423 * 10 8 6 14 14 C 1.53004 * 109.47026 * 325.14272 * 4 2 1 15 15 C 1.53123 * 109.52097 * 298.58537 * 14 4 2 16 16 C 1.53032 * 109.27482 * 182.44119 * 15 14 4 17 17 N 1.46850 * 109.52230 * 59.18225 * 16 15 14 18 18 C 1.46903 * 110.99999 * 174.15695 * 17 16 15 19 19 C 1.46848 * 111.19869 * 298.25430 * 17 16 15 20 20 C 1.53030 * 109.52128 * 61.74091 * 19 17 16 21 21 H 1.08992 * 109.47570 * 300.77946 * 1 2 3 22 22 H 1.09003 * 109.47264 * 60.78302 * 1 2 3 23 23 H 1.09003 * 109.46829 * 180.77279 * 1 2 3 24 24 H 1.09003 * 109.46535 * 187.82053 * 3 2 1 25 25 H 1.08993 * 109.47451 * 307.82419 * 3 2 1 26 26 H 1.09007 * 109.46822 * 67.82828 * 3 2 1 27 27 H 0.97001 * 120.00312 * 179.97438 * 9 8 6 28 28 H 1.08998 * 109.52319 * 58.78033 * 14 4 2 29 29 H 1.08998 * 109.50155 * 302.38339 * 15 14 4 30 30 H 1.08999 * 109.50375 * 62.50371 * 15 14 4 31 31 H 1.08997 * 109.46707 * 299.16728 * 16 15 14 32 32 H 1.09007 * 109.46093 * 179.19322 * 16 15 14 33 33 H 1.08991 * 109.47262 * 184.20537 * 18 17 16 34 34 H 1.09004 * 109.47109 * 304.21148 * 18 17 16 35 35 H 1.09005 * 109.46836 * 64.20852 * 18 17 16 36 36 H 1.09004 * 109.45851 * 301.72518 * 19 17 16 37 37 H 1.08998 * 109.46351 * 181.76571 * 19 17 16 38 38 H 1.09002 * 109.50429 * 180.87926 * 20 19 17 39 39 H 1.09007 * 109.50414 * 60.76682 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 2.9941 -0.4070 1.3863 6 6 2.0631 -2.2263 0.7717 7 1 1.4341 -2.9406 1.2822 8 6 2.9239 -2.6496 -0.2187 9 7 2.8236 -3.8695 -0.6999 10 14 4.2326 -1.4906 -0.8769 11 1 5.4964 -1.6923 -0.1239 12 1 4.4640 -1.7719 -2.3167 13 1 3.7777 -0.0865 -0.7137 14 6 1.0731 -0.5848 2.3449 15 6 1.0313 0.8941 2.7395 16 6 0.1561 1.0603 3.9839 17 7 0.7080 0.2574 5.0827 18 6 -0.0258 0.4999 6.3320 19 6 0.7143 -1.1717 4.7450 20 6 1.6060 -1.4045 3.5233 21 1 -0.3634 0.5258 0.8828 22 1 -0.3634 0.5016 -0.8969 23 1 -0.3633 -1.0276 0.0139 24 1 3.0761 1.3459 -0.1398 25 1 1.5372 1.9366 -0.8117 26 1 1.7634 1.8497 0.9518 27 1 3.4289 -4.1673 -1.3969 28 1 0.0689 -0.9235 2.0902 29 1 2.0414 1.2417 2.9559 30 1 0.6126 1.4778 1.9197 31 1 -0.8572 0.7252 3.7627 32 1 0.1358 2.1103 4.2760 33 1 0.4492 -0.0492 7.1449 34 1 -0.0150 1.5661 6.5587 35 1 -1.0563 0.1628 6.2193 36 1 -0.3018 -1.4962 4.5203 37 1 1.0992 -1.7428 5.5899 38 1 1.5981 -2.4631 3.2634 39 1 2.6253 -1.0931 3.7520 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259315452.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:38 Heat of formation + Delta-G solvation = 2.980547 kcal Electronic energy + Delta-G solvation = -17213.824948 eV Core-core repulsion = 14770.103650 eV Total energy + Delta-G solvation = -2443.721298 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.73737 -38.20459 -34.50992 -33.92975 -31.81179 -30.06036 -28.42345 -27.16366 -25.06013 -23.99298 -23.42305 -21.16736 -20.32988 -18.73415 -17.15207 -16.39264 -16.20094 -15.95694 -15.70236 -15.50666 -15.07731 -14.79133 -14.39513 -13.82340 -13.59496 -13.20074 -13.01086 -12.87448 -12.75452 -12.65505 -12.38229 -12.25020 -12.10902 -11.97508 -11.89093 -11.28991 -11.23097 -11.17305 -10.77238 -10.46568 -9.26765 -8.58586 -8.16187 -6.20067 1.45778 1.49779 1.67624 2.56510 3.04438 3.10795 3.70867 3.97852 3.98938 4.03055 4.27070 4.44354 4.47289 4.53455 4.61672 4.63276 4.66722 4.70476 4.74908 4.81006 4.90339 4.95414 5.01872 5.04988 5.10057 5.11733 5.17364 5.28164 5.35091 5.47634 5.63480 5.78182 6.14608 6.21291 6.26701 6.58801 6.75914 6.94628 7.53283 8.97556 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.032825 B = 0.009425 C = 0.008347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.808506 B = 2970.235606 C = 3353.565133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.560 5.560 3 C 0.001 3.999 4 C 0.197 3.803 5 H 0.027 0.973 6 C -0.497 4.497 7 H 0.030 0.970 8 C 0.031 3.969 9 N -0.951 5.951 10 Si 0.929 3.071 11 H -0.294 1.294 12 H -0.306 1.306 13 H -0.201 1.201 14 C -0.094 4.094 15 C -0.116 4.116 16 C 0.062 3.938 17 N -0.554 5.554 18 C 0.026 3.974 19 C 0.064 3.936 20 C -0.096 4.096 21 H 0.040 0.960 22 H 0.062 0.938 23 H 0.038 0.962 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.049 0.951 27 H 0.259 0.741 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.027 0.973 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.080 0.920 38 H 0.049 0.951 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.172 13.163 9.857 17.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.284 5.284 3 C -0.146 4.146 4 C 0.090 3.910 5 H 0.045 0.955 6 C -0.535 4.535 7 H 0.048 0.952 8 C -0.167 4.167 9 N -0.592 5.592 10 Si 0.756 3.244 11 H -0.222 1.222 12 H -0.234 1.234 13 H -0.123 1.123 14 C -0.114 4.114 15 C -0.153 4.153 16 C -0.066 4.066 17 N -0.279 5.279 18 C -0.122 4.122 19 C -0.064 4.064 20 C -0.135 4.135 21 H 0.058 0.942 22 H 0.081 0.919 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.045 0.955 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.482 12.993 9.385 16.643 hybrid contribution -0.389 -0.473 -0.163 0.633 sum -4.871 12.521 9.221 16.295 Atomic orbital electron populations 1.22233 0.88415 1.00360 1.00019 1.62592 1.07795 1.12545 1.45483 1.22861 1.00424 0.90016 1.01301 1.19513 0.93487 0.91843 0.86126 0.95497 1.21121 1.21568 0.92120 1.18734 0.95194 1.25722 0.99654 0.95875 0.95497 1.70139 1.39178 1.20893 1.28977 0.86081 0.77992 0.84586 0.75776 1.22167 1.23401 1.12347 1.21583 0.99119 0.95141 0.95574 1.22033 1.00455 0.95832 0.96957 1.22090 0.95405 0.98259 0.90858 1.61950 1.54924 1.06781 1.04287 1.22404 0.95682 1.02824 0.91280 1.22041 0.97744 0.88704 0.97867 1.21407 0.98919 0.99478 0.93671 0.94201 0.91944 0.94327 0.92630 0.91315 0.93252 0.93290 0.93076 0.91946 0.90014 0.95482 0.89221 0.90795 0.90139 0.95740 0.95761 0.90203 0.93202 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.37 8.11 127.69 1.04 2.41 16 2 N -0.56 -22.97 3.58 -927.71 -3.32 -26.29 16 3 C 0.00 0.05 8.61 127.69 1.10 1.15 16 4 C 0.20 8.77 0.84 44.17 0.04 8.81 16 5 H 0.03 1.24 6.52 -2.39 -0.02 1.23 16 6 C -0.50 -27.87 8.13 25.60 0.21 -27.66 16 7 H 0.03 1.87 7.11 -2.91 -0.02 1.85 16 8 C 0.03 1.80 5.45 84.65 0.46 2.26 16 9 N -0.95 -60.84 13.96 21.45 0.30 -60.54 16 10 Si 0.93 45.65 26.89 68.60 1.84 47.49 16 11 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 12 H -0.31 -15.49 7.11 99.48 0.71 -14.78 16 13 H -0.20 -8.78 3.54 99.48 0.35 -8.43 16 14 C -0.09 -3.53 1.22 -10.71 -0.01 -3.54 16 15 C -0.12 -3.44 3.51 30.65 0.11 -3.33 16 16 C 0.06 1.57 5.46 86.32 0.47 2.04 16 17 N -0.55 -14.71 4.91 -922.58 -4.53 -19.24 16 18 C 0.03 0.51 9.59 127.69 1.22 1.74 16 19 C 0.06 1.93 5.46 86.32 0.47 2.40 16 20 C -0.10 -3.58 5.06 30.64 0.16 -3.43 16 21 H 0.04 1.27 4.77 -2.39 -0.01 1.26 16 22 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 23 H 0.04 1.62 7.67 -2.39 -0.02 1.60 16 24 H 0.06 1.92 6.04 -2.39 -0.01 1.90 16 25 H 0.07 1.98 8.10 -2.39 -0.02 1.96 16 26 H 0.05 1.43 4.43 -2.38 -0.01 1.42 16 27 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 28 H 0.05 2.04 6.34 -2.39 -0.02 2.03 16 29 H 0.06 1.92 8.01 -2.39 -0.02 1.90 16 30 H 0.08 2.28 4.03 -2.39 -0.01 2.27 16 31 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.09 1.88 8.09 -2.38 -0.02 1.86 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.34 8.09 -2.38 -0.02 1.32 16 35 H 0.02 0.47 8.14 -2.38 -0.02 0.45 16 36 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 2.17 8.12 -2.39 -0.02 2.15 16 38 H 0.05 2.13 6.76 -2.39 -0.02 2.12 16 39 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -65.74 279.80 0.20 -65.54 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.65 Total: 10.20 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 5.26 Total: -17.16 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -7.55 Total: -106.07 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.84 Total: 47.49 kcal Total: -65.74 0.20 -65.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259315452.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.519 kcal (2) G-P(sol) polarization free energy of solvation -65.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds