Wall clock time and date at job start Mon Mar 30 2020 03:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 111.00004 * 2 1 4 4 C 1.46905 * 110.99843 * 123.95037 * 2 1 3 5 5 H 1.08994 * 109.50450 * 54.92052 * 4 2 1 6 6 C 1.53037 * 109.53398 * 294.81992 * 4 2 1 7 7 N 1.46852 * 109.52358 * 180.86189 * 6 4 2 8 8 C 1.46894 * 111.00193 * 185.84304 * 7 6 4 9 9 C 1.46849 * 111.19649 * 61.74211 * 7 6 4 10 10 C 1.53040 * 109.52418 * 298.26023 * 9 7 6 11 11 C 1.53119 * 109.49938 * 175.00224 * 4 2 1 12 12 H 1.09001 * 109.52383 * 57.66822 * 11 4 2 13 13 C 1.53002 * 109.52467 * 297.53520 * 11 4 2 14 14 C 1.50696 * 109.46997 * 174.99988 * 13 11 4 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 13 11 16 16 C 1.37885 * 119.99717 * 180.02562 * 14 13 11 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 H 1.08999 * 109.46873 * 296.04949 * 1 2 3 23 23 H 1.08993 * 109.47264 * 56.04699 * 1 2 3 24 24 H 1.08998 * 109.47198 * 176.05221 * 1 2 3 25 25 H 1.09002 * 109.47577 * 183.95332 * 3 2 1 26 26 H 1.09008 * 109.46976 * 303.94938 * 3 2 1 27 27 H 1.08997 * 109.47472 * 63.95362 * 3 2 1 28 28 H 1.08997 * 109.46592 * 300.87508 * 6 4 2 29 29 H 1.09001 * 109.46271 * 60.86094 * 6 4 2 30 30 H 1.09004 * 109.47383 * 59.99881 * 8 7 6 31 31 H 1.09002 * 109.46984 * 179.97438 * 8 7 6 32 32 H 1.08993 * 109.47058 * 299.99948 * 8 7 6 33 33 H 1.08999 * 109.46151 * 58.27764 * 9 7 6 34 34 H 1.09002 * 109.45840 * 178.25818 * 9 7 6 35 35 H 1.08999 * 109.50345 * 299.23650 * 10 9 7 36 36 H 1.09001 * 109.49746 * 179.11850 * 10 9 7 37 37 H 1.09005 * 109.46767 * 55.00339 * 13 11 4 38 38 H 1.09002 * 109.47113 * 295.00679 * 13 11 4 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 1 1.5746 -1.7713 1.1255 6 6 1.6136 -0.0680 2.4450 7 7 2.1575 -0.8227 3.5813 8 6 1.6948 -0.2600 4.8569 9 6 3.6241 -0.8755 3.5304 10 6 4.0660 -1.5975 2.2554 11 6 3.5210 -0.8490 1.0359 12 1 3.9395 0.1571 1.0078 13 6 3.9082 -1.5997 -0.2398 14 6 5.4061 -1.5744 -0.4024 15 1 6.0206 -1.0734 0.3309 16 6 5.9923 -2.1910 -1.4876 17 7 7.2996 -2.1694 -1.6293 18 14 4.9294 -3.0570 -2.7563 19 1 4.7466 -4.4771 -2.3628 20 1 3.6049 -2.3896 -2.8312 21 1 5.5918 -2.9925 -4.0839 22 1 -0.3633 0.4513 0.9233 23 1 -0.3633 0.5739 -0.8524 24 1 -0.3633 -1.0252 -0.0708 25 1 3.0828 1.3433 -0.0708 26 1 1.5898 1.9163 -0.8525 27 1 1.7044 1.8724 0.9232 28 1 2.0231 0.9421 2.4506 29 1 0.5277 -0.0202 2.5275 30 1 0.6064 -0.3013 4.8988 31 1 2.1120 -0.8380 5.6815 32 1 2.0224 0.7765 4.9368 33 1 4.0242 0.1384 3.5309 34 1 3.9985 -1.4141 4.4009 35 1 3.6778 -2.6160 2.2608 36 1 5.1548 -1.6226 2.2103 37 1 3.4412 -1.1197 -1.0998 38 1 3.5675 -2.6329 -0.1710 39 1 7.7119 -2.6034 -2.3925 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259732214.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:40 Heat of formation + Delta-G solvation = 6.924538 kcal Electronic energy + Delta-G solvation = -16943.052623 eV Core-core repulsion = 14499.502349 eV Total energy + Delta-G solvation = -2443.550274 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.54761 -36.22584 -34.14808 -32.01398 -29.45098 -28.79842 -27.39343 -25.77412 -24.10865 -22.95764 -20.97690 -20.35173 -18.72068 -16.65956 -15.83583 -15.29358 -14.77409 -14.66372 -14.30309 -13.84651 -13.70171 -13.06827 -12.88832 -12.59937 -12.46499 -12.02709 -11.72572 -11.69465 -11.60097 -11.37955 -11.24592 -10.79619 -10.73671 -10.53877 -10.10106 -9.64363 -9.54425 -9.29505 -8.87304 -8.40816 -8.24025 -7.81214 -5.92799 -3.88471 3.41520 3.48504 3.57676 4.00685 4.42578 4.58327 5.08136 5.19524 5.26798 5.40700 5.43022 5.45832 5.48060 5.55652 5.61200 5.70054 5.77354 5.82592 5.86312 5.93039 6.02800 6.10241 6.19233 6.31322 6.41128 6.43595 6.84995 6.98335 7.07959 7.13602 7.26251 7.40552 7.50115 7.56774 7.71864 7.95623 8.66518 9.12602 9.71782 11.20701 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.027334 B = 0.009081 C = 0.007508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.126001 B = 3082.568374 C = 3728.249978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.529 5.529 3 C 0.018 3.982 4 C 0.090 3.910 5 H 0.085 0.915 6 C 0.027 3.973 7 N -0.539 5.539 8 C 0.027 3.973 9 C 0.053 3.947 10 C -0.103 4.103 11 C -0.064 4.064 12 H 0.060 0.940 13 C -0.001 4.001 14 C -0.512 4.512 15 H 0.069 0.931 16 C 0.065 3.935 17 N -0.909 5.909 18 Si 0.876 3.124 19 H -0.280 1.280 20 H -0.260 1.260 21 H -0.292 1.292 22 H 0.021 0.979 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.020 0.980 28 H 0.033 0.967 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.019 0.981 33 H 0.028 0.972 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.032 0.968 38 H 0.007 0.993 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.895 5.038 8.576 16.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.251 5.251 3 C -0.130 4.130 4 C -0.019 4.019 5 H 0.103 0.897 6 C -0.103 4.103 7 N -0.264 5.264 8 C -0.122 4.122 9 C -0.074 4.074 10 C -0.141 4.141 11 C -0.083 4.083 12 H 0.078 0.922 13 C -0.039 4.039 14 C -0.550 4.550 15 H 0.087 0.913 16 C -0.135 4.135 17 N -0.549 5.549 18 Si 0.704 3.296 19 H -0.206 1.206 20 H -0.185 1.185 21 H -0.218 1.218 22 H 0.039 0.961 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.099 0.901 26 H 0.080 0.920 27 H 0.038 0.962 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.038 0.962 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.050 0.950 38 H 0.025 0.975 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.778 4.277 7.974 15.657 hybrid contribution -0.445 0.791 0.141 0.918 sum -13.223 5.068 8.114 16.321 Atomic orbital electron populations 1.22389 0.88479 1.01960 0.99707 1.62213 1.06711 1.13810 1.42350 1.22478 1.02294 0.88881 0.99324 1.21924 0.97592 0.97058 0.85323 0.89659 1.22800 0.99081 0.95742 0.92672 1.61899 1.10096 1.52658 1.01707 1.22332 1.00557 0.97232 0.92090 1.22252 0.86145 0.99095 0.99918 1.21592 1.01734 0.99095 0.91700 1.21130 0.90496 0.99752 0.96905 0.92203 1.19523 0.96664 0.94627 0.93068 1.21208 0.90503 1.34527 1.08766 0.91261 1.25001 0.94695 0.96028 0.97814 1.69927 1.09359 1.45259 1.30378 0.86820 0.81618 0.80296 0.80909 1.20592 1.18455 1.21799 0.96103 0.91863 0.91570 0.90103 0.92015 0.96174 0.94923 0.91662 0.91934 0.91516 0.96203 0.95396 0.91286 0.91734 0.89931 0.94956 0.97487 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.31 60.06 0.56 0.86 16 2 N -0.53 -8.66 4.27 -243.08 -1.04 -9.70 16 3 C 0.02 0.28 8.82 60.06 0.53 0.81 16 4 C 0.09 1.53 1.81 -67.63 -0.12 1.41 16 5 H 0.09 1.54 8.13 -51.93 -0.42 1.12 16 6 C 0.03 0.40 4.06 -3.83 -0.02 0.38 16 7 N -0.54 -7.92 4.91 -242.96 -1.19 -9.12 16 8 C 0.03 0.31 9.59 60.06 0.58 0.89 16 9 C 0.05 0.83 5.46 -3.83 -0.02 0.81 16 10 C -0.10 -1.92 5.15 -26.65 -0.14 -2.06 16 11 C -0.06 -1.27 1.43 -90.49 -0.13 -1.40 16 12 H 0.06 1.24 6.31 -51.93 -0.33 0.91 16 13 C 0.00 -0.03 3.45 -27.88 -0.10 -0.13 16 14 C -0.51 -14.50 9.00 -34.44 -0.31 -14.81 16 15 H 0.07 2.09 7.32 -52.49 -0.38 1.71 16 16 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.91 -28.38 13.96 55.43 0.77 -27.60 16 18 Si 0.88 22.38 27.47 -169.99 -4.67 17.71 16 19 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 21 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 22 H 0.02 0.25 6.47 -51.93 -0.34 -0.09 16 23 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.08 1.38 6.28 -51.93 -0.33 1.05 16 26 H 0.06 0.83 8.12 -51.92 -0.42 0.41 16 27 H 0.02 0.27 6.26 -51.93 -0.33 -0.05 16 28 H 0.03 0.50 6.34 -51.93 -0.33 0.17 16 29 H 0.07 0.89 6.56 -51.93 -0.34 0.55 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 32 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.08 1.69 7.05 -51.93 -0.37 1.32 16 37 H 0.03 0.81 6.60 -51.93 -0.34 0.47 16 38 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 39 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 291.25 15.07 4.39 4.39 Total: -1.00 -30.58 291.25 -7.86 -38.44 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -6.86 Total: -2.69 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 0.74 Total: -11.43 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: -1.46 Total: -46.42 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.67 Total: 17.71 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.58 -7.86 -38.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259732214.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.364 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds