Wall clock time and date at job start Mon Mar 30 2020 03:22:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46899 * 1
3 3 C 1.46899 * 111.00004 * 2 1
4 4 C 1.46905 * 110.99843 * 123.95037 * 2 1 3
5 5 H 1.08994 * 109.50450 * 54.92052 * 4 2 1
6 6 C 1.53037 * 109.53398 * 294.81992 * 4 2 1
7 7 N 1.46852 * 109.52358 * 180.86189 * 6 4 2
8 8 C 1.46894 * 111.00193 * 185.84304 * 7 6 4
9 9 C 1.46849 * 111.19649 * 61.74211 * 7 6 4
10 10 C 1.53040 * 109.52418 * 298.26023 * 9 7 6
11 11 C 1.53119 * 109.49938 * 175.00224 * 4 2 1
12 12 H 1.09001 * 109.52383 * 57.66822 * 11 4 2
13 13 C 1.53002 * 109.52467 * 297.53520 * 11 4 2
14 14 C 1.50696 * 109.46997 * 174.99988 * 13 11 4
15 15 H 1.07999 * 120.00319 * 0.02562 * 14 13 11
16 16 C 1.37885 * 119.99717 * 180.02562 * 14 13 11
17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 13
18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 13
19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14
20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14
21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14
22 22 H 1.08999 * 109.46873 * 296.04949 * 1 2 3
23 23 H 1.08993 * 109.47264 * 56.04699 * 1 2 3
24 24 H 1.08998 * 109.47198 * 176.05221 * 1 2 3
25 25 H 1.09002 * 109.47577 * 183.95332 * 3 2 1
26 26 H 1.09008 * 109.46976 * 303.94938 * 3 2 1
27 27 H 1.08997 * 109.47472 * 63.95362 * 3 2 1
28 28 H 1.08997 * 109.46592 * 300.87508 * 6 4 2
29 29 H 1.09001 * 109.46271 * 60.86094 * 6 4 2
30 30 H 1.09004 * 109.47383 * 59.99881 * 8 7 6
31 31 H 1.09002 * 109.46984 * 179.97438 * 8 7 6
32 32 H 1.08993 * 109.47058 * 299.99948 * 8 7 6
33 33 H 1.08999 * 109.46151 * 58.27764 * 9 7 6
34 34 H 1.09002 * 109.45840 * 178.25818 * 9 7 6
35 35 H 1.08999 * 109.50345 * 299.23650 * 10 9 7
36 36 H 1.09001 * 109.49746 * 179.11850 * 10 9 7
37 37 H 1.09005 * 109.46767 * 55.00339 * 13 11 4
38 38 H 1.09002 * 109.47113 * 295.00679 * 13 11 4
39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.9954 -0.7659 1.1377
5 1 1.5746 -1.7713 1.1255
6 6 1.6136 -0.0680 2.4450
7 7 2.1575 -0.8227 3.5813
8 6 1.6948 -0.2600 4.8569
9 6 3.6241 -0.8755 3.5304
10 6 4.0660 -1.5975 2.2554
11 6 3.5210 -0.8490 1.0359
12 1 3.9395 0.1571 1.0078
13 6 3.9082 -1.5997 -0.2398
14 6 5.4061 -1.5744 -0.4024
15 1 6.0206 -1.0734 0.3309
16 6 5.9923 -2.1910 -1.4876
17 7 7.2996 -2.1694 -1.6293
18 14 4.9294 -3.0570 -2.7563
19 1 4.7466 -4.4771 -2.3628
20 1 3.6049 -2.3896 -2.8312
21 1 5.5918 -2.9925 -4.0839
22 1 -0.3633 0.4513 0.9233
23 1 -0.3633 0.5739 -0.8524
24 1 -0.3633 -1.0252 -0.0708
25 1 3.0828 1.3433 -0.0708
26 1 1.5898 1.9163 -0.8525
27 1 1.7044 1.8724 0.9232
28 1 2.0231 0.9421 2.4506
29 1 0.5277 -0.0202 2.5275
30 1 0.6064 -0.3013 4.8988
31 1 2.1120 -0.8380 5.6815
32 1 2.0224 0.7765 4.9368
33 1 4.0242 0.1384 3.5309
34 1 3.9985 -1.4141 4.4009
35 1 3.6778 -2.6160 2.2608
36 1 5.1548 -1.6226 2.2103
37 1 3.4412 -1.1197 -1.0998
38 1 3.5675 -2.6329 -0.1710
39 1 7.7119 -2.6034 -2.3925
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259732214.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:22:40
Heat of formation + Delta-G solvation = 6.924538 kcal
Electronic energy + Delta-G solvation = -16943.052623 eV
Core-core repulsion = 14499.502349 eV
Total energy + Delta-G solvation = -2443.550274 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.54761 -36.22584 -34.14808 -32.01398 -29.45098 -28.79842 -27.39343 -25.77412
-24.10865 -22.95764 -20.97690 -20.35173 -18.72068 -16.65956 -15.83583 -15.29358
-14.77409 -14.66372 -14.30309 -13.84651 -13.70171 -13.06827 -12.88832 -12.59937
-12.46499 -12.02709 -11.72572 -11.69465 -11.60097 -11.37955 -11.24592 -10.79619
-10.73671 -10.53877 -10.10106 -9.64363 -9.54425 -9.29505 -8.87304 -8.40816
-8.24025 -7.81214 -5.92799 -3.88471 3.41520 3.48504 3.57676 4.00685
4.42578 4.58327 5.08136 5.19524 5.26798 5.40700 5.43022 5.45832
5.48060 5.55652 5.61200 5.70054 5.77354 5.82592 5.86312 5.93039
6.02800 6.10241 6.19233 6.31322 6.41128 6.43595 6.84995 6.98335
7.07959 7.13602 7.26251 7.40552 7.50115 7.56774 7.71864 7.95623
8.66518 9.12602 9.71782 11.20701
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.027334 B = 0.009081 C = 0.007508
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1024.126001 B = 3082.568374 C = 3728.249978
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.023 3.977
2 N -0.529 5.529
3 C 0.018 3.982
4 C 0.090 3.910
5 H 0.085 0.915
6 C 0.027 3.973
7 N -0.539 5.539
8 C 0.027 3.973
9 C 0.053 3.947
10 C -0.103 4.103
11 C -0.064 4.064
12 H 0.060 0.940
13 C -0.001 4.001
14 C -0.512 4.512
15 H 0.069 0.931
16 C 0.065 3.935
17 N -0.909 5.909
18 Si 0.876 3.124
19 H -0.280 1.280
20 H -0.260 1.260
21 H -0.292 1.292
22 H 0.021 0.979
23 H 0.063 0.937
24 H 0.065 0.935
25 H 0.080 0.920
26 H 0.061 0.939
27 H 0.020 0.980
28 H 0.033 0.967
29 H 0.065 0.935
30 H 0.062 0.938
31 H 0.066 0.934
32 H 0.019 0.981
33 H 0.028 0.972
34 H 0.069 0.931
35 H 0.064 0.936
36 H 0.082 0.918
37 H 0.032 0.968
38 H 0.007 0.993
39 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.895 5.038 8.576 16.285
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 N -0.251 5.251
3 C -0.130 4.130
4 C -0.019 4.019
5 H 0.103 0.897
6 C -0.103 4.103
7 N -0.264 5.264
8 C -0.122 4.122
9 C -0.074 4.074
10 C -0.141 4.141
11 C -0.083 4.083
12 H 0.078 0.922
13 C -0.039 4.039
14 C -0.550 4.550
15 H 0.087 0.913
16 C -0.135 4.135
17 N -0.549 5.549
18 Si 0.704 3.296
19 H -0.206 1.206
20 H -0.185 1.185
21 H -0.218 1.218
22 H 0.039 0.961
23 H 0.081 0.919
24 H 0.084 0.916
25 H 0.099 0.901
26 H 0.080 0.920
27 H 0.038 0.962
28 H 0.051 0.949
29 H 0.083 0.917
30 H 0.081 0.919
31 H 0.085 0.915
32 H 0.038 0.962
33 H 0.046 0.954
34 H 0.087 0.913
35 H 0.083 0.917
36 H 0.101 0.899
37 H 0.050 0.950
38 H 0.025 0.975
39 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -12.778 4.277 7.974 15.657
hybrid contribution -0.445 0.791 0.141 0.918
sum -13.223 5.068 8.114 16.321
Atomic orbital electron populations
1.22389 0.88479 1.01960 0.99707 1.62213 1.06711 1.13810 1.42350
1.22478 1.02294 0.88881 0.99324 1.21924 0.97592 0.97058 0.85323
0.89659 1.22800 0.99081 0.95742 0.92672 1.61899 1.10096 1.52658
1.01707 1.22332 1.00557 0.97232 0.92090 1.22252 0.86145 0.99095
0.99918 1.21592 1.01734 0.99095 0.91700 1.21130 0.90496 0.99752
0.96905 0.92203 1.19523 0.96664 0.94627 0.93068 1.21208 0.90503
1.34527 1.08766 0.91261 1.25001 0.94695 0.96028 0.97814 1.69927
1.09359 1.45259 1.30378 0.86820 0.81618 0.80296 0.80909 1.20592
1.18455 1.21799 0.96103 0.91863 0.91570 0.90103 0.92015 0.96174
0.94923 0.91662 0.91934 0.91516 0.96203 0.95396 0.91286 0.91734
0.89931 0.94956 0.97487 0.93012
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.30 9.31 60.06 0.56 0.86 16
2 N -0.53 -8.66 4.27 -243.08 -1.04 -9.70 16
3 C 0.02 0.28 8.82 60.06 0.53 0.81 16
4 C 0.09 1.53 1.81 -67.63 -0.12 1.41 16
5 H 0.09 1.54 8.13 -51.93 -0.42 1.12 16
6 C 0.03 0.40 4.06 -3.83 -0.02 0.38 16
7 N -0.54 -7.92 4.91 -242.96 -1.19 -9.12 16
8 C 0.03 0.31 9.59 60.06 0.58 0.89 16
9 C 0.05 0.83 5.46 -3.83 -0.02 0.81 16
10 C -0.10 -1.92 5.15 -26.65 -0.14 -2.06 16
11 C -0.06 -1.27 1.43 -90.49 -0.13 -1.40 16
12 H 0.06 1.24 6.31 -51.93 -0.33 0.91 16
13 C 0.00 -0.03 3.45 -27.88 -0.10 -0.13 16
14 C -0.51 -14.50 9.00 -34.44 -0.31 -14.81 16
15 H 0.07 2.09 7.32 -52.49 -0.38 1.71 16
16 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16
17 N -0.91 -28.38 13.96 55.43 0.77 -27.60 16
18 Si 0.88 22.38 27.47 -169.99 -4.67 17.71 16
19 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16
20 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16
21 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16
22 H 0.02 0.25 6.47 -51.93 -0.34 -0.09 16
23 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16
24 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16
25 H 0.08 1.38 6.28 -51.93 -0.33 1.05 16
26 H 0.06 0.83 8.12 -51.92 -0.42 0.41 16
27 H 0.02 0.27 6.26 -51.93 -0.33 -0.05 16
28 H 0.03 0.50 6.34 -51.93 -0.33 0.17 16
29 H 0.07 0.89 6.56 -51.93 -0.34 0.55 16
30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
31 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16
32 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16
33 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16
34 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16
35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16
36 H 0.08 1.69 7.05 -51.93 -0.37 1.32 16
37 H 0.03 0.81 6.60 -51.93 -0.34 0.47 16
38 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16
39 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16
LS Contribution 291.25 15.07 4.39 4.39
Total: -1.00 -30.58 291.25 -7.86 -38.44
By element:
Atomic # 1 Polarization: 4.17 SS G_CDS: -6.86 Total: -2.69 kcal
Atomic # 6 Polarization: -12.17 SS G_CDS: 0.74 Total: -11.43 kcal
Atomic # 7 Polarization: -44.96 SS G_CDS: -1.46 Total: -46.42 kcal
Atomic # 14 Polarization: 22.38 SS G_CDS: -4.67 Total: 17.71 kcal
Total LS contribution 4.39 Total: 4.39 kcal
Total: -30.58 -7.86 -38.44 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259732214.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.364 kcal
(2) G-P(sol) polarization free energy of solvation -30.580 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.784 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.440 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.925 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds