Wall clock time and date at job start Mon Mar 30 2020 03:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 111.00004 * 2 1 4 4 C 1.46905 * 110.99843 * 123.95037 * 2 1 3 5 5 H 1.08994 * 109.50450 * 54.92052 * 4 2 1 6 6 C 1.53037 * 109.53398 * 294.81992 * 4 2 1 7 7 N 1.46852 * 109.52358 * 180.86189 * 6 4 2 8 8 C 1.46894 * 111.00193 * 185.84304 * 7 6 4 9 9 C 1.46849 * 111.19649 * 61.74211 * 7 6 4 10 10 C 1.53040 * 109.52418 * 298.26023 * 9 7 6 11 11 C 1.53119 * 109.49938 * 175.00224 * 4 2 1 12 12 H 1.09001 * 109.52383 * 57.66822 * 11 4 2 13 13 C 1.53002 * 109.52467 * 297.53520 * 11 4 2 14 14 C 1.50696 * 109.46997 * 174.99988 * 13 11 4 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 13 11 16 16 C 1.37885 * 119.99717 * 180.02562 * 14 13 11 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 H 1.08999 * 109.46873 * 296.04949 * 1 2 3 23 23 H 1.08993 * 109.47264 * 56.04699 * 1 2 3 24 24 H 1.08998 * 109.47198 * 176.05221 * 1 2 3 25 25 H 1.09002 * 109.47577 * 183.95332 * 3 2 1 26 26 H 1.09008 * 109.46976 * 303.94938 * 3 2 1 27 27 H 1.08997 * 109.47472 * 63.95362 * 3 2 1 28 28 H 1.08997 * 109.46592 * 300.87508 * 6 4 2 29 29 H 1.09001 * 109.46271 * 60.86094 * 6 4 2 30 30 H 1.09004 * 109.47383 * 59.99881 * 8 7 6 31 31 H 1.09002 * 109.46984 * 179.97438 * 8 7 6 32 32 H 1.08993 * 109.47058 * 299.99948 * 8 7 6 33 33 H 1.08999 * 109.46151 * 58.27764 * 9 7 6 34 34 H 1.09002 * 109.45840 * 178.25818 * 9 7 6 35 35 H 1.08999 * 109.50345 * 299.23650 * 10 9 7 36 36 H 1.09001 * 109.49746 * 179.11850 * 10 9 7 37 37 H 1.09005 * 109.46767 * 55.00339 * 13 11 4 38 38 H 1.09002 * 109.47113 * 295.00679 * 13 11 4 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 1 1.5746 -1.7713 1.1255 6 6 1.6136 -0.0680 2.4450 7 7 2.1575 -0.8227 3.5813 8 6 1.6948 -0.2600 4.8569 9 6 3.6241 -0.8755 3.5304 10 6 4.0660 -1.5975 2.2554 11 6 3.5210 -0.8490 1.0359 12 1 3.9395 0.1571 1.0078 13 6 3.9082 -1.5997 -0.2398 14 6 5.4061 -1.5744 -0.4024 15 1 6.0206 -1.0734 0.3309 16 6 5.9923 -2.1910 -1.4876 17 7 7.2996 -2.1694 -1.6293 18 14 4.9294 -3.0570 -2.7563 19 1 4.7466 -4.4771 -2.3628 20 1 3.6049 -2.3896 -2.8312 21 1 5.5918 -2.9925 -4.0839 22 1 -0.3633 0.4513 0.9233 23 1 -0.3633 0.5739 -0.8524 24 1 -0.3633 -1.0252 -0.0708 25 1 3.0828 1.3433 -0.0708 26 1 1.5898 1.9163 -0.8525 27 1 1.7044 1.8724 0.9232 28 1 2.0231 0.9421 2.4506 29 1 0.5277 -0.0202 2.5275 30 1 0.6064 -0.3013 4.8988 31 1 2.1120 -0.8380 5.6815 32 1 2.0224 0.7765 4.9368 33 1 4.0242 0.1384 3.5309 34 1 3.9985 -1.4141 4.4009 35 1 3.6778 -2.6160 2.2608 36 1 5.1548 -1.6226 2.2103 37 1 3.4412 -1.1197 -1.0998 38 1 3.5675 -2.6329 -0.1710 39 1 7.7119 -2.6034 -2.3925 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259732214.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:40 Heat of formation + Delta-G solvation = -14.961619 kcal Electronic energy + Delta-G solvation = -16944.001678 eV Core-core repulsion = 14499.502349 eV Total energy + Delta-G solvation = -2444.499329 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.86174 -37.39598 -35.88880 -34.03525 -30.84637 -30.36468 -28.52991 -27.19839 -25.38246 -24.54284 -22.23985 -22.04961 -20.19475 -18.80377 -17.10985 -16.52356 -16.33828 -15.96360 -15.85455 -15.19337 -14.95599 -14.70282 -14.24824 -14.18870 -13.87690 -13.63407 -13.14992 -12.84708 -12.82706 -12.70025 -12.53154 -12.39885 -12.32062 -12.07142 -11.84792 -11.59682 -11.28309 -11.01126 -10.79856 -10.67384 -9.37852 -9.00298 -8.22600 -6.22821 1.37505 1.39574 1.54232 2.41817 2.86394 3.13774 3.25979 3.83776 3.91661 4.09335 4.17791 4.31407 4.40563 4.42344 4.49846 4.58543 4.61172 4.65779 4.69696 4.77543 4.85020 4.94024 4.99444 5.02875 5.06682 5.08969 5.20522 5.34613 5.43088 5.62312 5.72195 5.78777 5.96785 6.12550 6.23901 6.33014 6.38706 6.84232 7.40725 8.94049 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.027334 B = 0.009081 C = 0.007508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.126001 B = 3082.568374 C = 3728.249978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.554 5.554 3 C 0.023 3.977 4 C 0.099 3.901 5 H 0.077 0.923 6 C 0.036 3.964 7 N -0.549 5.549 8 C 0.027 3.973 9 C 0.063 3.937 10 C -0.100 4.100 11 C -0.060 4.060 12 H 0.046 0.954 13 C 0.009 3.991 14 C -0.513 4.513 15 H 0.034 0.966 16 C 0.004 3.996 17 N -0.955 5.955 18 Si 0.943 3.057 19 H -0.271 1.271 20 H -0.249 1.249 21 H -0.287 1.287 22 H 0.037 0.963 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.077 0.923 27 H 0.036 0.964 28 H 0.030 0.970 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.024 0.976 33 H 0.025 0.975 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.025 0.975 38 H 0.004 0.996 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.710 5.215 9.187 18.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.277 5.277 3 C -0.125 4.125 4 C -0.010 4.010 5 H 0.095 0.905 6 C -0.093 4.093 7 N -0.274 5.274 8 C -0.121 4.121 9 C -0.064 4.064 10 C -0.138 4.138 11 C -0.079 4.079 12 H 0.064 0.936 13 C -0.029 4.029 14 C -0.551 4.551 15 H 0.052 0.948 16 C -0.192 4.192 17 N -0.597 5.597 18 Si 0.767 3.233 19 H -0.196 1.196 20 H -0.172 1.172 21 H -0.213 1.213 22 H 0.055 0.945 23 H 0.095 0.905 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.043 0.957 38 H 0.022 0.978 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.616 4.464 8.604 18.380 hybrid contribution 0.481 0.774 -0.008 0.911 sum -15.135 5.239 8.596 18.177 Atomic orbital electron populations 1.22431 0.86132 1.02571 1.01138 1.62151 1.08960 1.14342 1.42295 1.22409 1.00481 0.88763 1.00864 1.21679 0.94773 0.97334 0.87254 0.90509 1.22675 1.00154 0.95083 0.91411 1.61887 1.09023 1.53380 1.03084 1.22412 1.01598 0.97496 0.90616 1.22081 0.87275 0.98606 0.98472 1.21469 0.99816 0.99230 0.93318 1.20999 0.93324 0.98314 0.95262 0.93558 1.19376 0.93453 0.94876 0.95159 1.21512 0.92623 1.33320 1.07678 0.94784 1.25905 0.95926 0.97106 1.00233 1.70072 1.11307 1.46824 1.31462 0.85753 0.80072 0.79356 0.78073 1.19601 1.17243 1.21296 0.94477 0.90544 0.91405 0.93046 0.90460 0.94569 0.95143 0.89609 0.90301 0.90353 0.95747 0.95658 0.89564 0.92246 0.92946 0.95653 0.97794 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.31 127.69 1.19 1.76 16 2 N -0.55 -17.13 4.27 -922.97 -3.94 -21.07 16 3 C 0.02 0.65 8.82 127.69 1.13 1.78 16 4 C 0.10 3.21 1.81 44.97 0.08 3.29 16 5 H 0.08 2.64 8.13 -2.39 -0.02 2.62 16 6 C 0.04 0.98 4.06 86.32 0.35 1.33 16 7 N -0.55 -14.71 4.91 -922.58 -4.53 -19.24 16 8 C 0.03 0.53 9.59 127.69 1.22 1.75 16 9 C 0.06 1.89 5.46 86.33 0.47 2.37 16 10 C -0.10 -3.78 5.15 30.65 0.16 -3.63 16 11 C -0.06 -2.41 1.43 -10.71 -0.02 -2.42 16 12 H 0.05 1.97 6.31 -2.39 -0.02 1.96 16 13 C 0.01 0.43 3.45 29.85 0.10 0.53 16 14 C -0.51 -30.11 9.00 25.60 0.23 -29.88 16 15 H 0.03 2.18 7.32 -2.91 -0.02 2.16 16 16 C 0.00 0.25 5.47 84.66 0.46 0.71 16 17 N -0.95 -61.34 13.96 21.45 0.30 -61.04 16 18 Si 0.94 46.54 27.47 68.60 1.88 48.42 16 19 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 20 H -0.25 -11.72 6.54 99.48 0.65 -11.07 16 21 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 22 H 0.04 0.74 6.47 -2.39 -0.02 0.72 16 23 H 0.08 1.56 8.12 -2.39 -0.02 1.54 16 24 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.05 1.76 6.28 -2.39 -0.01 1.74 16 26 H 0.08 1.93 8.12 -2.38 -0.02 1.91 16 27 H 0.04 0.90 6.26 -2.39 -0.01 0.89 16 28 H 0.03 0.84 6.34 -2.39 -0.02 0.83 16 29 H 0.09 1.99 6.56 -2.39 -0.02 1.98 16 30 H 0.08 1.33 8.14 -2.38 -0.02 1.32 16 31 H 0.08 1.39 8.09 -2.39 -0.02 1.37 16 32 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.09 2.28 8.09 -2.39 -0.02 2.26 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.05 2.26 7.05 -2.39 -0.02 2.24 16 37 H 0.03 1.27 6.60 -2.38 -0.02 1.25 16 38 H 0.00 0.18 7.57 -2.39 -0.02 0.17 16 39 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -66.81 291.25 0.03 -66.79 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 0.94 Total: 8.55 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 5.38 Total: -22.41 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -8.18 Total: -101.35 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 1.88 Total: 48.42 kcal Total: -66.81 0.03 -66.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259732214.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.824 kcal (2) G-P(sol) polarization free energy of solvation -66.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds