Wall clock time and date at job start Mon Mar 30 2020 03:22:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46899 * 1
3 3 C 1.46899 * 111.00004 * 2 1
4 4 C 1.46905 * 110.99843 * 123.95037 * 2 1 3
5 5 H 1.08994 * 109.50450 * 54.92052 * 4 2 1
6 6 C 1.53037 * 109.53398 * 294.81992 * 4 2 1
7 7 N 1.46852 * 109.52358 * 180.86189 * 6 4 2
8 8 C 1.46894 * 111.00193 * 185.84304 * 7 6 4
9 9 C 1.46849 * 111.19649 * 61.74211 * 7 6 4
10 10 C 1.53040 * 109.52418 * 298.26023 * 9 7 6
11 11 C 1.53119 * 109.49938 * 175.00224 * 4 2 1
12 12 H 1.09001 * 109.52383 * 57.66822 * 11 4 2
13 13 C 1.53002 * 109.52467 * 297.53520 * 11 4 2
14 14 C 1.50696 * 109.46997 * 174.99988 * 13 11 4
15 15 H 1.07999 * 120.00319 * 0.02562 * 14 13 11
16 16 C 1.37885 * 119.99717 * 180.02562 * 14 13 11
17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 13
18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 13
19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14
20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14
21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14
22 22 H 1.08999 * 109.46873 * 296.04949 * 1 2 3
23 23 H 1.08993 * 109.47264 * 56.04699 * 1 2 3
24 24 H 1.08998 * 109.47198 * 176.05221 * 1 2 3
25 25 H 1.09002 * 109.47577 * 183.95332 * 3 2 1
26 26 H 1.09008 * 109.46976 * 303.94938 * 3 2 1
27 27 H 1.08997 * 109.47472 * 63.95362 * 3 2 1
28 28 H 1.08997 * 109.46592 * 300.87508 * 6 4 2
29 29 H 1.09001 * 109.46271 * 60.86094 * 6 4 2
30 30 H 1.09004 * 109.47383 * 59.99881 * 8 7 6
31 31 H 1.09002 * 109.46984 * 179.97438 * 8 7 6
32 32 H 1.08993 * 109.47058 * 299.99948 * 8 7 6
33 33 H 1.08999 * 109.46151 * 58.27764 * 9 7 6
34 34 H 1.09002 * 109.45840 * 178.25818 * 9 7 6
35 35 H 1.08999 * 109.50345 * 299.23650 * 10 9 7
36 36 H 1.09001 * 109.49746 * 179.11850 * 10 9 7
37 37 H 1.09005 * 109.46767 * 55.00339 * 13 11 4
38 38 H 1.09002 * 109.47113 * 295.00679 * 13 11 4
39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.9954 -0.7659 1.1377
5 1 1.5746 -1.7713 1.1255
6 6 1.6136 -0.0680 2.4450
7 7 2.1575 -0.8227 3.5813
8 6 1.6948 -0.2600 4.8569
9 6 3.6241 -0.8755 3.5304
10 6 4.0660 -1.5975 2.2554
11 6 3.5210 -0.8490 1.0359
12 1 3.9395 0.1571 1.0078
13 6 3.9082 -1.5997 -0.2398
14 6 5.4061 -1.5744 -0.4024
15 1 6.0206 -1.0734 0.3309
16 6 5.9923 -2.1910 -1.4876
17 7 7.2996 -2.1694 -1.6293
18 14 4.9294 -3.0570 -2.7563
19 1 4.7466 -4.4771 -2.3628
20 1 3.6049 -2.3896 -2.8312
21 1 5.5918 -2.9925 -4.0839
22 1 -0.3633 0.4513 0.9233
23 1 -0.3633 0.5739 -0.8524
24 1 -0.3633 -1.0252 -0.0708
25 1 3.0828 1.3433 -0.0708
26 1 1.5898 1.9163 -0.8525
27 1 1.7044 1.8724 0.9232
28 1 2.0231 0.9421 2.4506
29 1 0.5277 -0.0202 2.5275
30 1 0.6064 -0.3013 4.8988
31 1 2.1120 -0.8380 5.6815
32 1 2.0224 0.7765 4.9368
33 1 4.0242 0.1384 3.5309
34 1 3.9985 -1.4141 4.4009
35 1 3.6778 -2.6160 2.2608
36 1 5.1548 -1.6226 2.2103
37 1 3.4412 -1.1197 -1.0998
38 1 3.5675 -2.6329 -0.1710
39 1 7.7119 -2.6034 -2.3925
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259732214.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:22:40
Heat of formation + Delta-G solvation = -14.961619 kcal
Electronic energy + Delta-G solvation = -16944.001678 eV
Core-core repulsion = 14499.502349 eV
Total energy + Delta-G solvation = -2444.499329 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.86174 -37.39598 -35.88880 -34.03525 -30.84637 -30.36468 -28.52991 -27.19839
-25.38246 -24.54284 -22.23985 -22.04961 -20.19475 -18.80377 -17.10985 -16.52356
-16.33828 -15.96360 -15.85455 -15.19337 -14.95599 -14.70282 -14.24824 -14.18870
-13.87690 -13.63407 -13.14992 -12.84708 -12.82706 -12.70025 -12.53154 -12.39885
-12.32062 -12.07142 -11.84792 -11.59682 -11.28309 -11.01126 -10.79856 -10.67384
-9.37852 -9.00298 -8.22600 -6.22821 1.37505 1.39574 1.54232 2.41817
2.86394 3.13774 3.25979 3.83776 3.91661 4.09335 4.17791 4.31407
4.40563 4.42344 4.49846 4.58543 4.61172 4.65779 4.69696 4.77543
4.85020 4.94024 4.99444 5.02875 5.06682 5.08969 5.20522 5.34613
5.43088 5.62312 5.72195 5.78777 5.96785 6.12550 6.23901 6.33014
6.38706 6.84232 7.40725 8.94049
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.027334 B = 0.009081 C = 0.007508
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1024.126001 B = 3082.568374 C = 3728.249978
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 N -0.554 5.554
3 C 0.023 3.977
4 C 0.099 3.901
5 H 0.077 0.923
6 C 0.036 3.964
7 N -0.549 5.549
8 C 0.027 3.973
9 C 0.063 3.937
10 C -0.100 4.100
11 C -0.060 4.060
12 H 0.046 0.954
13 C 0.009 3.991
14 C -0.513 4.513
15 H 0.034 0.966
16 C 0.004 3.996
17 N -0.955 5.955
18 Si 0.943 3.057
19 H -0.271 1.271
20 H -0.249 1.249
21 H -0.287 1.287
22 H 0.037 0.963
23 H 0.076 0.924
24 H 0.067 0.933
25 H 0.051 0.949
26 H 0.077 0.923
27 H 0.036 0.964
28 H 0.030 0.970
29 H 0.086 0.914
30 H 0.078 0.922
31 H 0.078 0.922
32 H 0.024 0.976
33 H 0.025 0.975
34 H 0.086 0.914
35 H 0.059 0.941
36 H 0.052 0.948
37 H 0.025 0.975
38 H 0.004 0.996
39 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.710 5.215 9.187 18.932
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 N -0.277 5.277
3 C -0.125 4.125
4 C -0.010 4.010
5 H 0.095 0.905
6 C -0.093 4.093
7 N -0.274 5.274
8 C -0.121 4.121
9 C -0.064 4.064
10 C -0.138 4.138
11 C -0.079 4.079
12 H 0.064 0.936
13 C -0.029 4.029
14 C -0.551 4.551
15 H 0.052 0.948
16 C -0.192 4.192
17 N -0.597 5.597
18 Si 0.767 3.233
19 H -0.196 1.196
20 H -0.172 1.172
21 H -0.213 1.213
22 H 0.055 0.945
23 H 0.095 0.905
24 H 0.086 0.914
25 H 0.070 0.930
26 H 0.095 0.905
27 H 0.054 0.946
28 H 0.049 0.951
29 H 0.104 0.896
30 H 0.097 0.903
31 H 0.096 0.904
32 H 0.043 0.957
33 H 0.043 0.957
34 H 0.104 0.896
35 H 0.078 0.922
36 H 0.071 0.929
37 H 0.043 0.957
38 H 0.022 0.978
39 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -15.616 4.464 8.604 18.380
hybrid contribution 0.481 0.774 -0.008 0.911
sum -15.135 5.239 8.596 18.177
Atomic orbital electron populations
1.22431 0.86132 1.02571 1.01138 1.62151 1.08960 1.14342 1.42295
1.22409 1.00481 0.88763 1.00864 1.21679 0.94773 0.97334 0.87254
0.90509 1.22675 1.00154 0.95083 0.91411 1.61887 1.09023 1.53380
1.03084 1.22412 1.01598 0.97496 0.90616 1.22081 0.87275 0.98606
0.98472 1.21469 0.99816 0.99230 0.93318 1.20999 0.93324 0.98314
0.95262 0.93558 1.19376 0.93453 0.94876 0.95159 1.21512 0.92623
1.33320 1.07678 0.94784 1.25905 0.95926 0.97106 1.00233 1.70072
1.11307 1.46824 1.31462 0.85753 0.80072 0.79356 0.78073 1.19601
1.17243 1.21296 0.94477 0.90544 0.91405 0.93046 0.90460 0.94569
0.95143 0.89609 0.90301 0.90353 0.95747 0.95658 0.89564 0.92246
0.92946 0.95653 0.97794 0.92845
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.57 9.31 127.69 1.19 1.76 16
2 N -0.55 -17.13 4.27 -922.97 -3.94 -21.07 16
3 C 0.02 0.65 8.82 127.69 1.13 1.78 16
4 C 0.10 3.21 1.81 44.97 0.08 3.29 16
5 H 0.08 2.64 8.13 -2.39 -0.02 2.62 16
6 C 0.04 0.98 4.06 86.32 0.35 1.33 16
7 N -0.55 -14.71 4.91 -922.58 -4.53 -19.24 16
8 C 0.03 0.53 9.59 127.69 1.22 1.75 16
9 C 0.06 1.89 5.46 86.33 0.47 2.37 16
10 C -0.10 -3.78 5.15 30.65 0.16 -3.63 16
11 C -0.06 -2.41 1.43 -10.71 -0.02 -2.42 16
12 H 0.05 1.97 6.31 -2.39 -0.02 1.96 16
13 C 0.01 0.43 3.45 29.85 0.10 0.53 16
14 C -0.51 -30.11 9.00 25.60 0.23 -29.88 16
15 H 0.03 2.18 7.32 -2.91 -0.02 2.16 16
16 C 0.00 0.25 5.47 84.66 0.46 0.71 16
17 N -0.95 -61.34 13.96 21.45 0.30 -61.04 16
18 Si 0.94 46.54 27.47 68.60 1.88 48.42 16
19 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16
20 H -0.25 -11.72 6.54 99.48 0.65 -11.07 16
21 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16
22 H 0.04 0.74 6.47 -2.39 -0.02 0.72 16
23 H 0.08 1.56 8.12 -2.39 -0.02 1.54 16
24 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16
25 H 0.05 1.76 6.28 -2.39 -0.01 1.74 16
26 H 0.08 1.93 8.12 -2.38 -0.02 1.91 16
27 H 0.04 0.90 6.26 -2.39 -0.01 0.89 16
28 H 0.03 0.84 6.34 -2.39 -0.02 0.83 16
29 H 0.09 1.99 6.56 -2.39 -0.02 1.98 16
30 H 0.08 1.33 8.14 -2.38 -0.02 1.32 16
31 H 0.08 1.39 8.09 -2.39 -0.02 1.37 16
32 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16
33 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16
34 H 0.09 2.28 8.09 -2.39 -0.02 2.26 16
35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16
36 H 0.05 2.26 7.05 -2.39 -0.02 2.24 16
37 H 0.03 1.27 6.60 -2.38 -0.02 1.25 16
38 H 0.00 0.18 7.57 -2.39 -0.02 0.17 16
39 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16
Total: -1.00 -66.81 291.25 0.03 -66.79
By element:
Atomic # 1 Polarization: 7.61 SS G_CDS: 0.94 Total: 8.55 kcal
Atomic # 6 Polarization: -27.79 SS G_CDS: 5.38 Total: -22.41 kcal
Atomic # 7 Polarization: -93.17 SS G_CDS: -8.18 Total: -101.35 kcal
Atomic # 14 Polarization: 46.54 SS G_CDS: 1.88 Total: 48.42 kcal
Total: -66.81 0.03 -66.79 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259732214.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.824 kcal
(2) G-P(sol) polarization free energy of solvation -66.813 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.989 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.027 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.786 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.962 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds