Wall clock time and date at job start Mon Mar 30 2020 03:21:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46903 * 1
3 3 C 1.46892 * 111.00436 * 2 1
4 4 C 1.46908 * 110.99787 * 123.94930 * 2 1 3
5 5 H 1.09003 * 109.49924 * 55.07661 * 4 2 1
6 6 C 1.53118 * 109.50327 * 294.99982 * 4 2 1
7 7 C 1.53116 * 109.16115 * 182.40135 * 6 4 2
8 8 C 1.53046 * 109.27587 * 57.65424 * 7 6 4
9 9 N 1.46852 * 109.52192 * 300.82174 * 8 7 6
10 10 C 1.46905 * 110.99684 * 185.84238 * 9 8 7
11 11 C 1.46839 * 111.19761 * 61.74106 * 9 8 7
12 12 H 1.08999 * 109.46660 * 58.27858 * 11 9 8
13 13 C 1.53003 * 109.46224 * 178.24157 * 11 9 8
14 14 C 1.50703 * 109.47203 * 57.24493 * 13 11 9
15 15 H 1.08005 * 119.99443 * 354.92690 * 14 13 11
16 16 C 1.37878 * 120.00129 * 174.92897 * 14 13 11
17 17 N 1.31510 * 119.99909 * 0.02562 * 16 14 13
18 18 Si 1.86796 * 119.99826 * 179.97438 * 16 14 13
19 19 H 1.48501 * 109.47158 * 60.00472 * 18 16 14
20 20 H 1.48502 * 109.47031 * 179.97438 * 18 16 14
21 21 H 1.48500 * 109.47553 * 300.00430 * 18 16 14
22 22 H 1.08999 * 109.47143 * 296.05028 * 1 2 3
23 23 H 1.08997 * 109.46550 * 56.04715 * 1 2 3
24 24 H 1.09003 * 109.47198 * 176.05201 * 1 2 3
25 25 H 1.08995 * 109.47360 * 183.95580 * 3 2 1
26 26 H 1.09009 * 109.46874 * 303.95243 * 3 2 1
27 27 H 1.08996 * 109.47362 * 63.94904 * 3 2 1
28 28 H 1.08995 * 109.52061 * 302.31077 * 6 4 2
29 29 H 1.09004 * 109.52380 * 62.43436 * 6 4 2
30 30 H 1.08993 * 109.50767 * 177.59296 * 7 6 4
31 31 H 1.09004 * 109.50789 * 297.67854 * 7 6 4
32 32 H 1.08999 * 109.46117 * 60.83495 * 8 7 6
33 33 H 1.08999 * 109.46328 * 180.80408 * 8 7 6
34 34 H 1.08992 * 109.47393 * 53.43833 * 10 9 8
35 35 H 1.08995 * 109.46799 * 173.43950 * 10 9 8
36 36 H 1.08999 * 109.46432 * 293.43593 * 10 9 8
37 37 H 1.08999 * 109.47396 * 177.24470 * 13 11 9
38 38 H 1.09007 * 109.47023 * 297.24992 * 13 11 9
39 39 H 0.96996 * 119.99800 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3713 0.0000
4 6 1.9954 -0.7659 1.1377
5 1 1.5767 -1.7722 1.1239
6 6 1.6092 -0.0694 2.4455
7 6 2.2121 -0.8407 3.6228
8 6 3.7310 -0.9175 3.4516
9 7 4.0489 -1.5925 2.1868
10 6 5.4960 -1.8078 2.0542
11 6 3.5205 -0.8449 1.0387
12 1 3.9371 0.1623 1.0382
13 6 3.9109 -1.5582 -0.2574
14 6 3.3933 -2.9733 -0.2276
15 1 2.9131 -3.3539 0.6618
16 6 3.5327 -3.7818 -1.3357
17 7 4.1179 -3.3184 -2.4184
18 14 2.8917 -5.5360 -1.2984
19 1 1.4284 -5.5230 -1.0457
20 1 3.1622 -6.1897 -2.6041
21 1 3.5742 -6.2896 -0.2161
22 1 -0.3633 0.4513 0.9232
23 1 -0.3632 0.5740 -0.8524
24 1 -0.3634 -1.0252 -0.0708
25 1 3.0828 1.3431 -0.0709
26 1 1.5899 1.9162 -0.8525
27 1 1.7045 1.8723 0.9232
28 1 1.9941 0.9503 2.4425
29 1 0.5234 -0.0486 2.5402
30 1 1.9765 -0.3258 4.5541
31 1 1.7969 -1.8482 3.6488
32 1 4.1466 0.0901 3.4400
33 1 4.1620 -1.4783 4.2809
34 1 5.8685 -2.3269 2.9371
35 1 5.6938 -2.4105 1.1678
36 1 5.9991 -0.8455 1.9590
37 1 3.4777 -1.0307 -1.1072
38 1 4.9968 -1.5706 -0.3525
39 1 4.2157 -3.8872 -3.1980
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259737404.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:21:35
Heat of formation + Delta-G solvation = 13.501781 kcal
Electronic energy + Delta-G solvation = -17325.207095 eV
Core-core repulsion = 14881.942032 eV
Total energy + Delta-G solvation = -2443.265063 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.36154 -36.02956 -33.31318 -32.03033 -30.29086 -27.25135 -26.79954 -25.87052
-23.95832 -23.18252 -20.82986 -20.22205 -18.57882 -16.12009 -15.40939 -14.98509
-14.54958 -14.39452 -14.02120 -13.94284 -13.48044 -13.12712 -12.91984 -12.20023
-11.94030 -11.77459 -11.55467 -11.28993 -11.18071 -10.95557 -10.86531 -10.70848
-10.55895 -10.41160 -10.33854 -10.10523 -9.55301 -9.03345 -8.82436 -8.10889
-7.59521 -7.38216 -5.75109 -3.70786 3.47767 3.51486 3.54874 4.35985
4.67024 4.84973 5.24640 5.28740 5.39475 5.61999 5.62428 5.66713
5.71333 5.80617 5.87803 5.92566 6.04369 6.08824 6.10949 6.13482
6.24616 6.27170 6.32265 6.41041 6.46682 6.52048 6.81953 6.91990
7.03592 7.65416 7.67315 7.76214 7.85092 7.99337 8.16277 8.30140
8.74078 9.35274 9.89127 11.37265
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.022505 B = 0.011163 C = 0.009297
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1243.843147 B = 2507.583155 C = 3010.934922
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 N -0.521 5.521
3 C 0.021 3.979
4 C 0.105 3.895
5 H 0.100 0.900
6 C -0.159 4.159
7 C -0.108 4.108
8 C 0.053 3.947
9 N -0.520 5.520
10 C 0.034 3.966
11 C 0.103 3.897
12 H 0.011 0.989
13 C 0.031 3.969
14 C -0.478 4.478
15 H 0.061 0.939
16 C 0.051 3.949
17 N -0.903 5.903
18 Si 0.885 3.115
19 H -0.281 1.281
20 H -0.293 1.293
21 H -0.280 1.280
22 H 0.017 0.983
23 H 0.060 0.940
24 H 0.068 0.932
25 H 0.069 0.931
26 H 0.059 0.941
27 H 0.018 0.982
28 H 0.054 0.946
29 H 0.056 0.944
30 H 0.055 0.945
31 H 0.070 0.930
32 H 0.018 0.982
33 H 0.065 0.935
34 H 0.051 0.949
35 H 0.091 0.909
36 H 0.008 0.992
37 H 0.040 0.960
38 H 0.006 0.994
39 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.704 7.477 9.200 12.420
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 N -0.243 5.243
3 C -0.128 4.128
4 C -0.003 4.003
5 H 0.118 0.882
6 C -0.198 4.198
7 C -0.147 4.147
8 C -0.075 4.075
9 N -0.245 5.245
10 C -0.114 4.114
11 C -0.005 4.005
12 H 0.029 0.971
13 C -0.006 4.006
14 C -0.516 4.516
15 H 0.079 0.921
16 C -0.148 4.148
17 N -0.545 5.545
18 Si 0.714 3.286
19 H -0.207 1.207
20 H -0.219 1.219
21 H -0.206 1.206
22 H 0.036 0.964
23 H 0.079 0.921
24 H 0.086 0.914
25 H 0.087 0.913
26 H 0.078 0.922
27 H 0.036 0.964
28 H 0.073 0.927
29 H 0.075 0.925
30 H 0.074 0.926
31 H 0.089 0.911
32 H 0.036 0.964
33 H 0.083 0.917
34 H 0.070 0.930
35 H 0.109 0.891
36 H 0.026 0.974
37 H 0.059 0.941
38 H 0.024 0.976
39 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -3.725 6.733 8.568 11.517
hybrid contribution -0.226 0.243 0.712 0.785
sum -3.952 6.977 9.280 12.264
Atomic orbital electron populations
1.22333 0.88360 1.02120 0.99197 1.62026 1.06691 1.12496 1.43093
1.22435 1.01335 0.89820 0.99161 1.21698 0.95830 0.97818 0.84977
0.88186 1.22369 0.99995 0.99681 0.97772 1.21452 0.95470 1.00872
0.96869 1.22087 0.95748 0.96079 0.93630 1.61722 1.13505 1.48425
1.00844 1.22301 0.87002 0.99146 1.02952 1.21749 0.92400 0.93265
0.93082 0.97132 1.19205 0.95571 0.95690 0.90133 1.21067 1.35963
0.96377 0.98219 0.92094 1.24965 0.96129 0.97825 0.95843 1.69955
1.44933 1.36069 1.03517 0.86787 0.79299 0.85949 0.76602 1.20651
1.21878 1.20631 0.96441 0.92147 0.91357 0.91254 0.92229 0.96376
0.92714 0.92515 0.92634 0.91110 0.96382 0.91663 0.93028 0.89068
0.97360 0.94129 0.97580 0.93536
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.45 9.31 60.07 0.56 1.00 16
2 N -0.52 -9.71 4.23 -243.08 -1.03 -10.74 16
3 C 0.02 0.34 8.82 60.06 0.53 0.87 16
4 C 0.11 2.02 1.63 -67.63 -0.11 1.91 16
5 H 0.10 2.21 6.88 -51.93 -0.36 1.85 16
6 C -0.16 -2.50 4.59 -26.61 -0.12 -2.62 16
7 C -0.11 -1.61 6.09 -26.65 -0.16 -1.77 16
8 C 0.05 0.85 5.46 -3.83 -0.02 0.83 16
9 N -0.52 -10.22 4.07 -234.93 -0.96 -11.18 16
10 C 0.03 0.64 8.95 60.07 0.54 1.18 16
11 C 0.10 2.15 1.30 -67.73 -0.09 2.06 16
12 H 0.01 0.23 6.38 -51.93 -0.33 -0.11 16
13 C 0.03 0.79 4.09 -27.88 -0.11 0.68 16
14 C -0.48 -13.21 7.58 -34.44 -0.26 -13.47 16
15 H 0.06 1.70 6.86 -52.48 -0.36 1.34 16
16 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16
17 N -0.90 -27.43 13.29 55.43 0.74 -26.70 16
18 Si 0.88 22.28 29.54 -169.99 -5.02 17.26 16
19 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16
20 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16
21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16
22 H 0.02 0.24 6.49 -51.93 -0.34 -0.09 16
23 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16
24 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16
25 H 0.07 1.19 6.31 -51.93 -0.33 0.87 16
26 H 0.06 0.87 8.12 -51.92 -0.42 0.45 16
27 H 0.02 0.26 6.23 -51.93 -0.32 -0.06 16
28 H 0.05 0.84 6.27 -51.93 -0.33 0.52 16
29 H 0.06 0.83 6.65 -51.93 -0.35 0.49 16
30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16
32 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16
33 H 0.06 0.95 8.06 -51.93 -0.42 0.54 16
34 H 0.05 0.84 8.05 -51.93 -0.42 0.43 16
35 H 0.09 1.98 6.18 -51.93 -0.32 1.66 16
36 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16
37 H 0.04 1.14 7.54 -51.93 -0.39 0.75 16
38 H 0.01 0.17 6.55 -51.92 -0.34 -0.17 16
39 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16
LS Contribution 289.44 15.07 4.36 4.36
Total: -1.00 -29.94 289.44 -7.95 -37.89
By element:
Atomic # 1 Polarization: 3.74 SS G_CDS: -6.69 Total: -2.95 kcal
Atomic # 6 Polarization: -8.60 SS G_CDS: 0.65 Total: -7.95 kcal
Atomic # 7 Polarization: -47.37 SS G_CDS: -1.25 Total: -48.62 kcal
Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal
Total LS contribution 4.36 Total: 4.36 kcal
Total: -29.94 -7.95 -37.89 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259737404.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.389 kcal
(2) G-P(sol) polarization free energy of solvation -29.940 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.449 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.887 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.502 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds