Wall clock time and date at job start Mon Mar 30 2020 03:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46892 * 111.00436 * 2 1 4 4 C 1.46908 * 110.99787 * 123.94930 * 2 1 3 5 5 H 1.09003 * 109.49924 * 55.07661 * 4 2 1 6 6 C 1.53118 * 109.50327 * 294.99982 * 4 2 1 7 7 C 1.53116 * 109.16115 * 182.40135 * 6 4 2 8 8 C 1.53046 * 109.27587 * 57.65424 * 7 6 4 9 9 N 1.46852 * 109.52192 * 300.82174 * 8 7 6 10 10 C 1.46905 * 110.99684 * 185.84238 * 9 8 7 11 11 C 1.46839 * 111.19761 * 61.74106 * 9 8 7 12 12 H 1.08999 * 109.46660 * 58.27858 * 11 9 8 13 13 C 1.53003 * 109.46224 * 178.24157 * 11 9 8 14 14 C 1.50703 * 109.47203 * 57.24493 * 13 11 9 15 15 H 1.08005 * 119.99443 * 354.92690 * 14 13 11 16 16 C 1.37878 * 120.00129 * 174.92897 * 14 13 11 17 17 N 1.31510 * 119.99909 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99826 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47158 * 60.00472 * 18 16 14 20 20 H 1.48502 * 109.47031 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47553 * 300.00430 * 18 16 14 22 22 H 1.08999 * 109.47143 * 296.05028 * 1 2 3 23 23 H 1.08997 * 109.46550 * 56.04715 * 1 2 3 24 24 H 1.09003 * 109.47198 * 176.05201 * 1 2 3 25 25 H 1.08995 * 109.47360 * 183.95580 * 3 2 1 26 26 H 1.09009 * 109.46874 * 303.95243 * 3 2 1 27 27 H 1.08996 * 109.47362 * 63.94904 * 3 2 1 28 28 H 1.08995 * 109.52061 * 302.31077 * 6 4 2 29 29 H 1.09004 * 109.52380 * 62.43436 * 6 4 2 30 30 H 1.08993 * 109.50767 * 177.59296 * 7 6 4 31 31 H 1.09004 * 109.50789 * 297.67854 * 7 6 4 32 32 H 1.08999 * 109.46117 * 60.83495 * 8 7 6 33 33 H 1.08999 * 109.46328 * 180.80408 * 8 7 6 34 34 H 1.08992 * 109.47393 * 53.43833 * 10 9 8 35 35 H 1.08995 * 109.46799 * 173.43950 * 10 9 8 36 36 H 1.08999 * 109.46432 * 293.43593 * 10 9 8 37 37 H 1.08999 * 109.47396 * 177.24470 * 13 11 9 38 38 H 1.09007 * 109.47023 * 297.24992 * 13 11 9 39 39 H 0.96996 * 119.99800 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7659 1.1377 5 1 1.5767 -1.7722 1.1239 6 6 1.6092 -0.0694 2.4455 7 6 2.2121 -0.8407 3.6228 8 6 3.7310 -0.9175 3.4516 9 7 4.0489 -1.5925 2.1868 10 6 5.4960 -1.8078 2.0542 11 6 3.5205 -0.8449 1.0387 12 1 3.9371 0.1623 1.0382 13 6 3.9109 -1.5582 -0.2574 14 6 3.3933 -2.9733 -0.2276 15 1 2.9131 -3.3539 0.6618 16 6 3.5327 -3.7818 -1.3357 17 7 4.1179 -3.3184 -2.4184 18 14 2.8917 -5.5360 -1.2984 19 1 1.4284 -5.5230 -1.0457 20 1 3.1622 -6.1897 -2.6041 21 1 3.5742 -6.2896 -0.2161 22 1 -0.3633 0.4513 0.9232 23 1 -0.3632 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0708 25 1 3.0828 1.3431 -0.0709 26 1 1.5899 1.9162 -0.8525 27 1 1.7045 1.8723 0.9232 28 1 1.9941 0.9503 2.4425 29 1 0.5234 -0.0486 2.5402 30 1 1.9765 -0.3258 4.5541 31 1 1.7969 -1.8482 3.6488 32 1 4.1466 0.0901 3.4400 33 1 4.1620 -1.4783 4.2809 34 1 5.8685 -2.3269 2.9371 35 1 5.6938 -2.4105 1.1678 36 1 5.9991 -0.8455 1.9590 37 1 3.4777 -1.0307 -1.1072 38 1 4.9968 -1.5706 -0.3525 39 1 4.2157 -3.8872 -3.1980 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259737404.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:35 Heat of formation + Delta-G solvation = 13.501781 kcal Electronic energy + Delta-G solvation = -17325.207095 eV Core-core repulsion = 14881.942032 eV Total energy + Delta-G solvation = -2443.265063 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.36154 -36.02956 -33.31318 -32.03033 -30.29086 -27.25135 -26.79954 -25.87052 -23.95832 -23.18252 -20.82986 -20.22205 -18.57882 -16.12009 -15.40939 -14.98509 -14.54958 -14.39452 -14.02120 -13.94284 -13.48044 -13.12712 -12.91984 -12.20023 -11.94030 -11.77459 -11.55467 -11.28993 -11.18071 -10.95557 -10.86531 -10.70848 -10.55895 -10.41160 -10.33854 -10.10523 -9.55301 -9.03345 -8.82436 -8.10889 -7.59521 -7.38216 -5.75109 -3.70786 3.47767 3.51486 3.54874 4.35985 4.67024 4.84973 5.24640 5.28740 5.39475 5.61999 5.62428 5.66713 5.71333 5.80617 5.87803 5.92566 6.04369 6.08824 6.10949 6.13482 6.24616 6.27170 6.32265 6.41041 6.46682 6.52048 6.81953 6.91990 7.03592 7.65416 7.67315 7.76214 7.85092 7.99337 8.16277 8.30140 8.74078 9.35274 9.89127 11.37265 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022505 B = 0.011163 C = 0.009297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.843147 B = 2507.583155 C = 3010.934922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.521 5.521 3 C 0.021 3.979 4 C 0.105 3.895 5 H 0.100 0.900 6 C -0.159 4.159 7 C -0.108 4.108 8 C 0.053 3.947 9 N -0.520 5.520 10 C 0.034 3.966 11 C 0.103 3.897 12 H 0.011 0.989 13 C 0.031 3.969 14 C -0.478 4.478 15 H 0.061 0.939 16 C 0.051 3.949 17 N -0.903 5.903 18 Si 0.885 3.115 19 H -0.281 1.281 20 H -0.293 1.293 21 H -0.280 1.280 22 H 0.017 0.983 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.018 0.982 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.018 0.982 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.008 0.992 37 H 0.040 0.960 38 H 0.006 0.994 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.704 7.477 9.200 12.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.243 5.243 3 C -0.128 4.128 4 C -0.003 4.003 5 H 0.118 0.882 6 C -0.198 4.198 7 C -0.147 4.147 8 C -0.075 4.075 9 N -0.245 5.245 10 C -0.114 4.114 11 C -0.005 4.005 12 H 0.029 0.971 13 C -0.006 4.006 14 C -0.516 4.516 15 H 0.079 0.921 16 C -0.148 4.148 17 N -0.545 5.545 18 Si 0.714 3.286 19 H -0.207 1.207 20 H -0.219 1.219 21 H -0.206 1.206 22 H 0.036 0.964 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.036 0.964 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.036 0.964 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.026 0.974 37 H 0.059 0.941 38 H 0.024 0.976 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.725 6.733 8.568 11.517 hybrid contribution -0.226 0.243 0.712 0.785 sum -3.952 6.977 9.280 12.264 Atomic orbital electron populations 1.22333 0.88360 1.02120 0.99197 1.62026 1.06691 1.12496 1.43093 1.22435 1.01335 0.89820 0.99161 1.21698 0.95830 0.97818 0.84977 0.88186 1.22369 0.99995 0.99681 0.97772 1.21452 0.95470 1.00872 0.96869 1.22087 0.95748 0.96079 0.93630 1.61722 1.13505 1.48425 1.00844 1.22301 0.87002 0.99146 1.02952 1.21749 0.92400 0.93265 0.93082 0.97132 1.19205 0.95571 0.95690 0.90133 1.21067 1.35963 0.96377 0.98219 0.92094 1.24965 0.96129 0.97825 0.95843 1.69955 1.44933 1.36069 1.03517 0.86787 0.79299 0.85949 0.76602 1.20651 1.21878 1.20631 0.96441 0.92147 0.91357 0.91254 0.92229 0.96376 0.92714 0.92515 0.92634 0.91110 0.96382 0.91663 0.93028 0.89068 0.97360 0.94129 0.97580 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.31 60.07 0.56 1.00 16 2 N -0.52 -9.71 4.23 -243.08 -1.03 -10.74 16 3 C 0.02 0.34 8.82 60.06 0.53 0.87 16 4 C 0.11 2.02 1.63 -67.63 -0.11 1.91 16 5 H 0.10 2.21 6.88 -51.93 -0.36 1.85 16 6 C -0.16 -2.50 4.59 -26.61 -0.12 -2.62 16 7 C -0.11 -1.61 6.09 -26.65 -0.16 -1.77 16 8 C 0.05 0.85 5.46 -3.83 -0.02 0.83 16 9 N -0.52 -10.22 4.07 -234.93 -0.96 -11.18 16 10 C 0.03 0.64 8.95 60.07 0.54 1.18 16 11 C 0.10 2.15 1.30 -67.73 -0.09 2.06 16 12 H 0.01 0.23 6.38 -51.93 -0.33 -0.11 16 13 C 0.03 0.79 4.09 -27.88 -0.11 0.68 16 14 C -0.48 -13.21 7.58 -34.44 -0.26 -13.47 16 15 H 0.06 1.70 6.86 -52.48 -0.36 1.34 16 16 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 17 N -0.90 -27.43 13.29 55.43 0.74 -26.70 16 18 Si 0.88 22.28 29.54 -169.99 -5.02 17.26 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 H 0.02 0.24 6.49 -51.93 -0.34 -0.09 16 23 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 24 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 25 H 0.07 1.19 6.31 -51.93 -0.33 0.87 16 26 H 0.06 0.87 8.12 -51.92 -0.42 0.45 16 27 H 0.02 0.26 6.23 -51.93 -0.32 -0.06 16 28 H 0.05 0.84 6.27 -51.93 -0.33 0.52 16 29 H 0.06 0.83 6.65 -51.93 -0.35 0.49 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.95 8.06 -51.93 -0.42 0.54 16 34 H 0.05 0.84 8.05 -51.93 -0.42 0.43 16 35 H 0.09 1.98 6.18 -51.93 -0.32 1.66 16 36 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 37 H 0.04 1.14 7.54 -51.93 -0.39 0.75 16 38 H 0.01 0.17 6.55 -51.92 -0.34 -0.17 16 39 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 289.44 15.07 4.36 4.36 Total: -1.00 -29.94 289.44 -7.95 -37.89 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -6.69 Total: -2.95 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 0.65 Total: -7.95 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -1.25 Total: -48.62 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.94 -7.95 -37.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259737404.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.389 kcal (2) G-P(sol) polarization free energy of solvation -29.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds