Wall clock time and date at job start Mon Mar 30 2020 03:21:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46903 * 1
3 3 C 1.46892 * 111.00436 * 2 1
4 4 C 1.46908 * 110.99787 * 123.94930 * 2 1 3
5 5 H 1.09003 * 109.49924 * 55.07661 * 4 2 1
6 6 C 1.53118 * 109.50327 * 294.99982 * 4 2 1
7 7 C 1.53116 * 109.16115 * 182.40135 * 6 4 2
8 8 C 1.53046 * 109.27587 * 57.65424 * 7 6 4
9 9 N 1.46852 * 109.52192 * 300.82174 * 8 7 6
10 10 C 1.46905 * 110.99684 * 185.84238 * 9 8 7
11 11 C 1.46839 * 111.19761 * 61.74106 * 9 8 7
12 12 H 1.08999 * 109.46660 * 58.27858 * 11 9 8
13 13 C 1.53003 * 109.46224 * 178.24157 * 11 9 8
14 14 C 1.50703 * 109.47203 * 57.24493 * 13 11 9
15 15 H 1.08005 * 119.99443 * 354.92690 * 14 13 11
16 16 C 1.37878 * 120.00129 * 174.92897 * 14 13 11
17 17 N 1.31510 * 119.99909 * 0.02562 * 16 14 13
18 18 Si 1.86796 * 119.99826 * 179.97438 * 16 14 13
19 19 H 1.48501 * 109.47158 * 60.00472 * 18 16 14
20 20 H 1.48502 * 109.47031 * 179.97438 * 18 16 14
21 21 H 1.48500 * 109.47553 * 300.00430 * 18 16 14
22 22 H 1.08999 * 109.47143 * 296.05028 * 1 2 3
23 23 H 1.08997 * 109.46550 * 56.04715 * 1 2 3
24 24 H 1.09003 * 109.47198 * 176.05201 * 1 2 3
25 25 H 1.08995 * 109.47360 * 183.95580 * 3 2 1
26 26 H 1.09009 * 109.46874 * 303.95243 * 3 2 1
27 27 H 1.08996 * 109.47362 * 63.94904 * 3 2 1
28 28 H 1.08995 * 109.52061 * 302.31077 * 6 4 2
29 29 H 1.09004 * 109.52380 * 62.43436 * 6 4 2
30 30 H 1.08993 * 109.50767 * 177.59296 * 7 6 4
31 31 H 1.09004 * 109.50789 * 297.67854 * 7 6 4
32 32 H 1.08999 * 109.46117 * 60.83495 * 8 7 6
33 33 H 1.08999 * 109.46328 * 180.80408 * 8 7 6
34 34 H 1.08992 * 109.47393 * 53.43833 * 10 9 8
35 35 H 1.08995 * 109.46799 * 173.43950 * 10 9 8
36 36 H 1.08999 * 109.46432 * 293.43593 * 10 9 8
37 37 H 1.08999 * 109.47396 * 177.24470 * 13 11 9
38 38 H 1.09007 * 109.47023 * 297.24992 * 13 11 9
39 39 H 0.96996 * 119.99800 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3713 0.0000
4 6 1.9954 -0.7659 1.1377
5 1 1.5767 -1.7722 1.1239
6 6 1.6092 -0.0694 2.4455
7 6 2.2121 -0.8407 3.6228
8 6 3.7310 -0.9175 3.4516
9 7 4.0489 -1.5925 2.1868
10 6 5.4960 -1.8078 2.0542
11 6 3.5205 -0.8449 1.0387
12 1 3.9371 0.1623 1.0382
13 6 3.9109 -1.5582 -0.2574
14 6 3.3933 -2.9733 -0.2276
15 1 2.9131 -3.3539 0.6618
16 6 3.5327 -3.7818 -1.3357
17 7 4.1179 -3.3184 -2.4184
18 14 2.8917 -5.5360 -1.2984
19 1 1.4284 -5.5230 -1.0457
20 1 3.1622 -6.1897 -2.6041
21 1 3.5742 -6.2896 -0.2161
22 1 -0.3633 0.4513 0.9232
23 1 -0.3632 0.5740 -0.8524
24 1 -0.3634 -1.0252 -0.0708
25 1 3.0828 1.3431 -0.0709
26 1 1.5899 1.9162 -0.8525
27 1 1.7045 1.8723 0.9232
28 1 1.9941 0.9503 2.4425
29 1 0.5234 -0.0486 2.5402
30 1 1.9765 -0.3258 4.5541
31 1 1.7969 -1.8482 3.6488
32 1 4.1466 0.0901 3.4400
33 1 4.1620 -1.4783 4.2809
34 1 5.8685 -2.3269 2.9371
35 1 5.6938 -2.4105 1.1678
36 1 5.9991 -0.8455 1.9590
37 1 3.4777 -1.0307 -1.1072
38 1 4.9968 -1.5706 -0.3525
39 1 4.2157 -3.8872 -3.1980
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259737404.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:21:35
Heat of formation + Delta-G solvation = -6.915185 kcal
Electronic energy + Delta-G solvation = -17326.092441 eV
Core-core repulsion = 14881.942032 eV
Total energy + Delta-G solvation = -2444.150410 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.82631 -37.44125 -35.19854 -33.66149 -32.00668 -28.56891 -28.51163 -27.37929
-25.57446 -24.88315 -22.15994 -21.83982 -20.17326 -18.11138 -16.90552 -16.55935
-16.38929 -15.78485 -15.54422 -15.41731 -14.84400 -14.55719 -14.41372 -14.00337
-13.44561 -13.24173 -13.04746 -12.82233 -12.68637 -12.59232 -12.51412 -12.39738
-12.23103 -12.00708 -11.93573 -11.56518 -11.21666 -10.94048 -10.81343 -10.33913
-9.00465 -8.83600 -7.98643 -6.00020 1.44271 1.46584 1.53502 2.53803
2.97329 3.35005 3.49362 3.95176 3.99684 4.10738 4.26239 4.36525
4.45619 4.48768 4.58255 4.59369 4.68646 4.74205 4.77116 4.83113
4.91629 5.03143 5.05364 5.07953 5.11922 5.22950 5.24173 5.29555
5.50828 5.65262 5.83810 5.97588 6.29186 6.34924 6.43992 6.49344
6.63979 7.13387 7.63425 9.13957
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.022505 B = 0.011163 C = 0.009297
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1243.843147 B = 2507.583155 C = 3010.934922
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 N -0.558 5.558
3 C 0.026 3.974
4 C 0.112 3.888
5 H 0.065 0.935
6 C -0.149 4.149
7 C -0.105 4.105
8 C 0.052 3.948
9 N -0.541 5.541
10 C 0.039 3.961
11 C 0.114 3.886
12 H 0.012 0.988
13 C 0.043 3.957
14 C -0.472 4.472
15 H 0.058 0.942
16 C -0.006 4.006
17 N -0.941 5.941
18 Si 0.948 3.052
19 H -0.273 1.273
20 H -0.292 1.292
21 H -0.273 1.273
22 H 0.040 0.960
23 H 0.073 0.927
24 H 0.054 0.946
25 H 0.049 0.951
26 H 0.072 0.928
27 H 0.040 0.960
28 H 0.063 0.937
29 H 0.072 0.928
30 H 0.090 0.910
31 H 0.061 0.939
32 H 0.026 0.974
33 H 0.084 0.916
34 H 0.078 0.922
35 H 0.051 0.949
36 H 0.016 0.984
37 H 0.008 0.992
38 H -0.022 1.022
39 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.896 8.001 11.428 14.785
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 N -0.281 5.281
3 C -0.122 4.122
4 C 0.003 3.997
5 H 0.083 0.917
6 C -0.188 4.188
7 C -0.144 4.144
8 C -0.075 4.075
9 N -0.266 5.266
10 C -0.109 4.109
11 C 0.005 3.995
12 H 0.030 0.970
13 C 0.006 3.994
14 C -0.510 4.510
15 H 0.076 0.924
16 C -0.201 4.201
17 N -0.584 5.584
18 Si 0.775 3.225
19 H -0.199 1.199
20 H -0.218 1.218
21 H -0.198 1.198
22 H 0.058 0.942
23 H 0.091 0.909
24 H 0.073 0.927
25 H 0.068 0.932
26 H 0.091 0.909
27 H 0.058 0.942
28 H 0.082 0.918
29 H 0.091 0.909
30 H 0.109 0.891
31 H 0.079 0.921
32 H 0.045 0.955
33 H 0.103 0.897
34 H 0.097 0.903
35 H 0.069 0.931
36 H 0.034 0.966
37 H 0.026 0.974
38 H -0.004 1.004
39 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges -4.927 7.262 10.822 13.932
hybrid contribution 0.174 0.114 0.014 0.209
sum -4.752 7.376 10.836 13.943
Atomic orbital electron populations
1.22326 0.86622 1.01780 1.00919 1.61939 1.08560 1.13951 1.43636
1.22385 1.00086 0.88858 1.00831 1.21453 0.93945 0.96863 0.87436
0.91666 1.22256 1.01069 0.99643 0.95814 1.21481 0.94238 1.00701
0.97950 1.22207 0.96953 0.96440 0.91936 1.61682 1.13695 1.49286
1.01920 1.22197 0.87213 0.99185 1.02337 1.21469 0.94080 0.92482
0.91436 0.97009 1.18960 0.93332 0.95176 0.91979 1.21267 1.34782
0.97222 0.97760 0.92378 1.25762 0.96676 1.01982 0.95653 1.70101
1.46608 1.37539 1.04194 0.85759 0.78953 0.81125 0.76647 1.19854
1.21782 1.19802 0.94192 0.90863 0.92719 0.93194 0.90946 0.94211
0.91801 0.90948 0.89141 0.92063 0.95531 0.89723 0.90330 0.93051
0.96565 0.97407 1.00352 0.93736
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.94 9.31 127.69 1.19 2.13 16
2 N -0.56 -20.51 4.23 -922.97 -3.91 -24.42 16
3 C 0.03 0.82 8.82 127.69 1.13 1.94 16
4 C 0.11 4.22 1.63 44.96 0.07 4.29 16
5 H 0.07 2.90 6.88 -2.39 -0.02 2.88 16
6 C -0.15 -4.23 4.59 30.67 0.14 -4.09 16
7 C -0.11 -2.76 6.09 30.65 0.19 -2.57 16
8 C 0.05 1.52 5.46 86.33 0.47 2.00 16
9 N -0.54 -20.80 4.07 -897.18 -3.65 -24.45 16
10 C 0.04 1.45 8.95 127.69 1.14 2.59 16
11 C 0.11 4.78 1.30 44.94 0.06 4.84 16
12 H 0.01 0.51 6.38 -2.39 -0.02 0.49 16
13 C 0.04 2.28 4.09 29.85 0.12 2.40 16
14 C -0.47 -26.82 7.58 25.60 0.19 -26.63 16
15 H 0.06 3.29 6.86 -2.91 -0.02 3.27 16
16 C -0.01 -0.33 5.46 84.66 0.46 0.13 16
17 N -0.94 -59.04 13.29 21.45 0.28 -58.76 16
18 Si 0.95 46.44 29.54 68.60 2.03 48.47 16
19 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16
20 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16
21 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16
22 H 0.04 1.00 6.49 -2.39 -0.02 0.99 16
23 H 0.07 1.96 8.12 -2.39 -0.02 1.94 16
24 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16
25 H 0.05 1.71 6.31 -2.39 -0.02 1.70 16
26 H 0.07 2.01 8.12 -2.38 -0.02 1.99 16
27 H 0.04 1.05 6.23 -2.39 -0.01 1.03 16
28 H 0.06 1.73 6.27 -2.39 -0.01 1.71 16
29 H 0.07 1.85 6.65 -2.38 -0.02 1.84 16
30 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16
31 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16
32 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16
33 H 0.08 2.16 8.06 -2.39 -0.02 2.14 16
34 H 0.08 2.45 8.05 -2.39 -0.02 2.43 16
35 H 0.05 2.31 6.18 -2.39 -0.01 2.29 16
36 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16
37 H 0.01 0.45 7.54 -2.39 -0.02 0.44 16
38 H -0.02 -1.26 6.55 -2.38 -0.02 -1.28 16
39 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16
Total: -1.00 -66.14 289.44 0.92 -65.23
By element:
Atomic # 1 Polarization: 5.90 SS G_CDS: 1.00 Total: 6.90 kcal
Atomic # 6 Polarization: -18.13 SS G_CDS: 5.17 Total: -12.97 kcal
Atomic # 7 Polarization: -100.35 SS G_CDS: -7.28 Total: -107.62 kcal
Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal
Total: -66.14 0.92 -65.23 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259737404.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.312 kcal
(2) G-P(sol) polarization free energy of solvation -66.142 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.830 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.227 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.915 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds