Wall clock time and date at job start Mon Mar 30 2020 03:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46892 * 111.00436 * 2 1 4 4 C 1.46908 * 110.99787 * 123.94930 * 2 1 3 5 5 H 1.09003 * 109.49924 * 55.07661 * 4 2 1 6 6 C 1.53118 * 109.50327 * 294.99982 * 4 2 1 7 7 C 1.53116 * 109.16115 * 182.40135 * 6 4 2 8 8 C 1.53046 * 109.27587 * 57.65424 * 7 6 4 9 9 N 1.46852 * 109.52192 * 300.82174 * 8 7 6 10 10 C 1.46905 * 110.99684 * 185.84238 * 9 8 7 11 11 C 1.46839 * 111.19761 * 61.74106 * 9 8 7 12 12 H 1.08999 * 109.46660 * 58.27858 * 11 9 8 13 13 C 1.53003 * 109.46224 * 178.24157 * 11 9 8 14 14 C 1.50703 * 109.47203 * 57.24493 * 13 11 9 15 15 H 1.08005 * 119.99443 * 354.92690 * 14 13 11 16 16 C 1.37878 * 120.00129 * 174.92897 * 14 13 11 17 17 N 1.31510 * 119.99909 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99826 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47158 * 60.00472 * 18 16 14 20 20 H 1.48502 * 109.47031 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47553 * 300.00430 * 18 16 14 22 22 H 1.08999 * 109.47143 * 296.05028 * 1 2 3 23 23 H 1.08997 * 109.46550 * 56.04715 * 1 2 3 24 24 H 1.09003 * 109.47198 * 176.05201 * 1 2 3 25 25 H 1.08995 * 109.47360 * 183.95580 * 3 2 1 26 26 H 1.09009 * 109.46874 * 303.95243 * 3 2 1 27 27 H 1.08996 * 109.47362 * 63.94904 * 3 2 1 28 28 H 1.08995 * 109.52061 * 302.31077 * 6 4 2 29 29 H 1.09004 * 109.52380 * 62.43436 * 6 4 2 30 30 H 1.08993 * 109.50767 * 177.59296 * 7 6 4 31 31 H 1.09004 * 109.50789 * 297.67854 * 7 6 4 32 32 H 1.08999 * 109.46117 * 60.83495 * 8 7 6 33 33 H 1.08999 * 109.46328 * 180.80408 * 8 7 6 34 34 H 1.08992 * 109.47393 * 53.43833 * 10 9 8 35 35 H 1.08995 * 109.46799 * 173.43950 * 10 9 8 36 36 H 1.08999 * 109.46432 * 293.43593 * 10 9 8 37 37 H 1.08999 * 109.47396 * 177.24470 * 13 11 9 38 38 H 1.09007 * 109.47023 * 297.24992 * 13 11 9 39 39 H 0.96996 * 119.99800 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7659 1.1377 5 1 1.5767 -1.7722 1.1239 6 6 1.6092 -0.0694 2.4455 7 6 2.2121 -0.8407 3.6228 8 6 3.7310 -0.9175 3.4516 9 7 4.0489 -1.5925 2.1868 10 6 5.4960 -1.8078 2.0542 11 6 3.5205 -0.8449 1.0387 12 1 3.9371 0.1623 1.0382 13 6 3.9109 -1.5582 -0.2574 14 6 3.3933 -2.9733 -0.2276 15 1 2.9131 -3.3539 0.6618 16 6 3.5327 -3.7818 -1.3357 17 7 4.1179 -3.3184 -2.4184 18 14 2.8917 -5.5360 -1.2984 19 1 1.4284 -5.5230 -1.0457 20 1 3.1622 -6.1897 -2.6041 21 1 3.5742 -6.2896 -0.2161 22 1 -0.3633 0.4513 0.9232 23 1 -0.3632 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0708 25 1 3.0828 1.3431 -0.0709 26 1 1.5899 1.9162 -0.8525 27 1 1.7045 1.8723 0.9232 28 1 1.9941 0.9503 2.4425 29 1 0.5234 -0.0486 2.5402 30 1 1.9765 -0.3258 4.5541 31 1 1.7969 -1.8482 3.6488 32 1 4.1466 0.0901 3.4400 33 1 4.1620 -1.4783 4.2809 34 1 5.8685 -2.3269 2.9371 35 1 5.6938 -2.4105 1.1678 36 1 5.9991 -0.8455 1.9590 37 1 3.4777 -1.0307 -1.1072 38 1 4.9968 -1.5706 -0.3525 39 1 4.2157 -3.8872 -3.1980 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259737404.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:35 Heat of formation + Delta-G solvation = -6.915185 kcal Electronic energy + Delta-G solvation = -17326.092441 eV Core-core repulsion = 14881.942032 eV Total energy + Delta-G solvation = -2444.150410 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.82631 -37.44125 -35.19854 -33.66149 -32.00668 -28.56891 -28.51163 -27.37929 -25.57446 -24.88315 -22.15994 -21.83982 -20.17326 -18.11138 -16.90552 -16.55935 -16.38929 -15.78485 -15.54422 -15.41731 -14.84400 -14.55719 -14.41372 -14.00337 -13.44561 -13.24173 -13.04746 -12.82233 -12.68637 -12.59232 -12.51412 -12.39738 -12.23103 -12.00708 -11.93573 -11.56518 -11.21666 -10.94048 -10.81343 -10.33913 -9.00465 -8.83600 -7.98643 -6.00020 1.44271 1.46584 1.53502 2.53803 2.97329 3.35005 3.49362 3.95176 3.99684 4.10738 4.26239 4.36525 4.45619 4.48768 4.58255 4.59369 4.68646 4.74205 4.77116 4.83113 4.91629 5.03143 5.05364 5.07953 5.11922 5.22950 5.24173 5.29555 5.50828 5.65262 5.83810 5.97588 6.29186 6.34924 6.43992 6.49344 6.63979 7.13387 7.63425 9.13957 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022505 B = 0.011163 C = 0.009297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.843147 B = 2507.583155 C = 3010.934922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.558 5.558 3 C 0.026 3.974 4 C 0.112 3.888 5 H 0.065 0.935 6 C -0.149 4.149 7 C -0.105 4.105 8 C 0.052 3.948 9 N -0.541 5.541 10 C 0.039 3.961 11 C 0.114 3.886 12 H 0.012 0.988 13 C 0.043 3.957 14 C -0.472 4.472 15 H 0.058 0.942 16 C -0.006 4.006 17 N -0.941 5.941 18 Si 0.948 3.052 19 H -0.273 1.273 20 H -0.292 1.292 21 H -0.273 1.273 22 H 0.040 0.960 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.026 0.974 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.016 0.984 37 H 0.008 0.992 38 H -0.022 1.022 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.896 8.001 11.428 14.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.281 5.281 3 C -0.122 4.122 4 C 0.003 3.997 5 H 0.083 0.917 6 C -0.188 4.188 7 C -0.144 4.144 8 C -0.075 4.075 9 N -0.266 5.266 10 C -0.109 4.109 11 C 0.005 3.995 12 H 0.030 0.970 13 C 0.006 3.994 14 C -0.510 4.510 15 H 0.076 0.924 16 C -0.201 4.201 17 N -0.584 5.584 18 Si 0.775 3.225 19 H -0.199 1.199 20 H -0.218 1.218 21 H -0.198 1.198 22 H 0.058 0.942 23 H 0.091 0.909 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.034 0.966 37 H 0.026 0.974 38 H -0.004 1.004 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.927 7.262 10.822 13.932 hybrid contribution 0.174 0.114 0.014 0.209 sum -4.752 7.376 10.836 13.943 Atomic orbital electron populations 1.22326 0.86622 1.01780 1.00919 1.61939 1.08560 1.13951 1.43636 1.22385 1.00086 0.88858 1.00831 1.21453 0.93945 0.96863 0.87436 0.91666 1.22256 1.01069 0.99643 0.95814 1.21481 0.94238 1.00701 0.97950 1.22207 0.96953 0.96440 0.91936 1.61682 1.13695 1.49286 1.01920 1.22197 0.87213 0.99185 1.02337 1.21469 0.94080 0.92482 0.91436 0.97009 1.18960 0.93332 0.95176 0.91979 1.21267 1.34782 0.97222 0.97760 0.92378 1.25762 0.96676 1.01982 0.95653 1.70101 1.46608 1.37539 1.04194 0.85759 0.78953 0.81125 0.76647 1.19854 1.21782 1.19802 0.94192 0.90863 0.92719 0.93194 0.90946 0.94211 0.91801 0.90948 0.89141 0.92063 0.95531 0.89723 0.90330 0.93051 0.96565 0.97407 1.00352 0.93736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 9.31 127.69 1.19 2.13 16 2 N -0.56 -20.51 4.23 -922.97 -3.91 -24.42 16 3 C 0.03 0.82 8.82 127.69 1.13 1.94 16 4 C 0.11 4.22 1.63 44.96 0.07 4.29 16 5 H 0.07 2.90 6.88 -2.39 -0.02 2.88 16 6 C -0.15 -4.23 4.59 30.67 0.14 -4.09 16 7 C -0.11 -2.76 6.09 30.65 0.19 -2.57 16 8 C 0.05 1.52 5.46 86.33 0.47 2.00 16 9 N -0.54 -20.80 4.07 -897.18 -3.65 -24.45 16 10 C 0.04 1.45 8.95 127.69 1.14 2.59 16 11 C 0.11 4.78 1.30 44.94 0.06 4.84 16 12 H 0.01 0.51 6.38 -2.39 -0.02 0.49 16 13 C 0.04 2.28 4.09 29.85 0.12 2.40 16 14 C -0.47 -26.82 7.58 25.60 0.19 -26.63 16 15 H 0.06 3.29 6.86 -2.91 -0.02 3.27 16 16 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 17 N -0.94 -59.04 13.29 21.45 0.28 -58.76 16 18 Si 0.95 46.44 29.54 68.60 2.03 48.47 16 19 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 21 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 22 H 0.04 1.00 6.49 -2.39 -0.02 0.99 16 23 H 0.07 1.96 8.12 -2.39 -0.02 1.94 16 24 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.05 1.71 6.31 -2.39 -0.02 1.70 16 26 H 0.07 2.01 8.12 -2.38 -0.02 1.99 16 27 H 0.04 1.05 6.23 -2.39 -0.01 1.03 16 28 H 0.06 1.73 6.27 -2.39 -0.01 1.71 16 29 H 0.07 1.85 6.65 -2.38 -0.02 1.84 16 30 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.08 2.16 8.06 -2.39 -0.02 2.14 16 34 H 0.08 2.45 8.05 -2.39 -0.02 2.43 16 35 H 0.05 2.31 6.18 -2.39 -0.01 2.29 16 36 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.01 0.45 7.54 -2.39 -0.02 0.44 16 38 H -0.02 -1.26 6.55 -2.38 -0.02 -1.28 16 39 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -66.14 289.44 0.92 -65.23 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 1.00 Total: 6.90 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 5.17 Total: -12.97 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -7.28 Total: -107.62 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -66.14 0.92 -65.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259737404.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.312 kcal (2) G-P(sol) polarization free energy of solvation -66.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds