Wall clock time and date at job start Mon Mar 30 2020 03:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47634 * 111.00241 * 2 1 4 4 C 1.50817 * 108.05150 * 150.35073 * 3 2 1 5 5 C 1.53820 * 111.62222 * 95.06110 * 4 3 2 6 6 C 1.54171 * 111.96698 * 319.04094 * 5 4 3 7 7 H 1.08997 * 108.85551 * 79.29755 * 6 5 4 8 8 C 1.53008 * 108.85137 * 197.68098 * 6 5 4 9 9 N 1.46899 * 109.46871 * 188.08690 * 8 6 5 10 10 C 1.46903 * 110.99736 * 180.02562 * 9 8 6 11 11 C 1.50706 * 109.46855 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00292 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99845 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00000 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 119.99857 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47056 * 90.00573 * 15 13 11 17 17 H 1.48506 * 109.46871 * 210.00550 * 15 13 11 18 18 H 1.48496 * 109.47567 * 330.00303 * 15 13 11 19 19 C 1.50748 * 112.61230 * 318.48610 * 6 5 4 20 20 C 1.39785 * 110.99721 * 231.11442 * 2 1 3 21 21 H 1.08994 * 109.47125 * 188.89124 * 1 2 3 22 22 H 1.09009 * 109.46717 * 308.88809 * 1 2 3 23 23 H 1.08994 * 109.47191 * 68.88561 * 1 2 3 24 24 H 1.08998 * 109.74686 * 269.98973 * 3 2 1 25 25 H 1.08997 * 109.74328 * 30.71286 * 3 2 1 26 26 H 1.08991 * 109.05137 * 334.50579 * 4 3 2 27 27 H 1.09006 * 109.04624 * 215.60829 * 4 3 2 28 28 H 1.08995 * 108.98435 * 198.39676 * 5 4 3 29 29 H 1.09000 * 108.91807 * 79.63554 * 5 4 3 30 30 H 1.08999 * 109.47231 * 308.08592 * 8 6 5 31 31 H 1.09003 * 109.46852 * 68.08831 * 8 6 5 32 32 H 1.00901 * 111.00306 * 56.04973 * 9 8 6 33 33 H 1.08998 * 109.47078 * 299.99635 * 10 9 8 34 34 H 1.09001 * 109.47013 * 60.00204 * 10 9 8 35 35 H 0.96999 * 119.99772 * 179.97438 * 14 13 11 36 36 H 1.08999 * 109.54600 * 333.15648 * 19 6 5 37 37 H 1.09001 * 109.62134 * 212.93063 * 19 6 5 38 38 H 1.09005 * 109.01588 * 309.71371 * 20 2 1 39 39 H 1.08998 * 109.02155 * 68.61026 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9981 1.3783 0.0000 4 6 3.3290 1.3679 0.7094 5 6 4.4983 1.2356 -0.2813 6 6 4.1918 0.2237 -1.4034 7 1 3.5559 0.7041 -2.1469 8 6 5.5058 -0.1865 -2.0715 9 7 5.2173 -0.9967 -3.2625 10 6 6.4583 -1.4102 -3.9311 11 6 6.1231 -2.2369 -5.1457 12 1 5.0914 -2.4357 -5.3957 13 6 7.1335 -2.7404 -5.9372 14 7 6.8410 -3.4615 -6.9974 15 14 8.9179 -2.3972 -5.5044 16 1 9.4245 -3.4674 -4.6081 17 1 9.7313 -2.3655 -6.7465 18 1 9.0167 -1.0859 -4.8145 19 6 3.4971 -1.0135 -0.8943 20 6 1.9699 -0.8193 -1.0158 21 1 -0.3633 -1.0153 0.1588 22 1 -0.3633 0.6452 0.8000 23 1 -0.3633 0.3702 -0.9586 24 1 2.1303 1.7220 -1.0259 25 1 1.3067 2.0381 0.5240 26 1 3.3551 0.5289 1.4046 27 1 3.4407 2.2963 1.2696 28 1 5.3858 0.9073 0.2596 29 1 4.6957 2.2105 -0.7272 30 1 6.0586 0.7060 -2.3645 31 1 6.1029 -0.7702 -1.3709 32 1 4.6112 -0.5011 -3.8989 33 1 7.0181 -0.5263 -4.2369 34 1 7.0617 -2.0025 -3.2431 35 1 7.5519 -3.8154 -7.5544 36 1 3.7620 -1.1767 0.1504 37 1 3.8034 -1.8754 -1.4871 38 1 1.4824 -1.7926 -0.9599 39 1 1.7463 -0.3651 -1.9812 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260013852.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:27 Heat of formation + Delta-G solvation = -25.980345 kcal Electronic energy + Delta-G solvation = -16124.822497 eV Core-core repulsion = 13679.845360 eV Total energy + Delta-G solvation = -2444.977137 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.51365 -37.64050 -35.52866 -34.28224 -32.94881 -30.15741 -28.52828 -26.43455 -25.43222 -23.67222 -22.84920 -21.70048 -20.08722 -18.95548 -17.05180 -16.63202 -16.41257 -16.27206 -15.93273 -15.55702 -15.12755 -14.55858 -14.41648 -14.04899 -13.92745 -13.56077 -13.33574 -13.09873 -12.63615 -12.58317 -12.55975 -12.22502 -11.89507 -11.84161 -11.63128 -11.57557 -11.37360 -11.13162 -11.04654 -10.82032 -9.12672 -9.11790 -8.31660 -6.36301 1.33959 1.35341 1.46474 2.32798 3.02380 3.09158 3.45348 3.84345 3.91951 4.03874 4.24712 4.31500 4.35816 4.50929 4.55410 4.60558 4.65496 4.78084 4.79101 4.80955 4.87965 4.92554 5.03969 5.07536 5.07919 5.17533 5.22702 5.31609 5.42685 5.49484 5.51688 5.67288 5.95590 6.26017 6.49480 6.54356 6.64737 6.75201 7.28937 8.85186 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.046008 B = 0.005299 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.444643 B = 5283.102806 C = 5736.632691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.566 5.566 3 C 0.063 3.937 4 C -0.109 4.109 5 C -0.109 4.109 6 C -0.074 4.074 7 H 0.053 0.947 8 C 0.061 3.939 9 N -0.685 5.685 10 C 0.175 3.825 11 C -0.529 4.529 12 H 0.037 0.963 13 C 0.008 3.992 14 N -0.948 5.948 15 Si 0.953 3.047 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.252 1.252 19 C -0.102 4.102 20 C 0.081 3.919 21 H 0.068 0.932 22 H 0.082 0.918 23 H 0.020 0.980 24 H 0.032 0.968 25 H 0.087 0.913 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.021 0.979 31 H 0.064 0.936 32 H 0.333 0.667 33 H -0.016 1.016 34 H 0.023 0.977 35 H 0.268 0.732 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.090 11.607 17.173 22.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.291 5.291 3 C -0.064 4.064 4 C -0.147 4.147 5 C -0.147 4.147 6 C -0.093 4.093 7 H 0.071 0.929 8 C -0.069 4.069 9 N -0.315 5.315 10 C 0.046 3.954 11 C -0.567 4.567 12 H 0.055 0.945 13 C -0.190 4.190 14 N -0.588 5.588 15 Si 0.776 3.224 16 H -0.190 1.190 17 H -0.205 1.205 18 H -0.176 1.176 19 C -0.140 4.140 20 C -0.048 4.048 21 H 0.087 0.913 22 H 0.100 0.900 23 H 0.039 0.961 24 H 0.050 0.950 25 H 0.106 0.894 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.039 0.961 31 H 0.082 0.918 32 H 0.150 0.850 33 H 0.002 0.998 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -7.916 10.727 17.776 22.220 hybrid contribution 0.727 0.775 -1.743 2.042 sum -7.189 11.502 16.033 21.001 Atomic orbital electron populations 1.22405 0.86093 1.02836 1.00489 1.58957 1.08184 1.12757 1.49180 1.21898 0.97054 0.88010 0.99423 1.21342 0.92794 1.02740 0.97855 1.21922 0.98866 0.98022 0.95889 1.20977 0.95071 0.96048 0.97173 0.92890 1.22132 0.97401 0.94709 0.92629 1.60360 1.16609 1.44930 1.09591 1.19741 0.89208 0.93781 0.92668 1.21344 0.93975 1.32230 1.09140 0.94516 1.25889 1.04344 0.94280 0.94440 1.70054 1.34746 1.36750 1.17251 0.85636 0.78675 0.79943 0.78174 1.18980 1.20494 1.17635 1.21392 0.93503 0.97778 1.01301 1.20837 0.95877 0.96825 0.91283 0.91344 0.89972 0.96131 0.94963 0.89444 0.91331 0.90157 0.91742 0.91909 0.96103 0.91776 0.85006 0.99802 0.95884 0.92311 0.91247 0.91725 0.91564 0.97666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.46 127.69 1.21 1.71 16 2 N -0.57 -12.21 4.19 -939.54 -3.94 -16.14 16 3 C 0.06 1.18 5.37 85.45 0.46 1.64 16 4 C -0.11 -1.97 5.41 30.16 0.16 -1.81 16 5 C -0.11 -2.29 5.27 31.27 0.16 -2.13 16 6 C -0.07 -1.99 1.83 -11.13 -0.02 -2.01 16 7 H 0.05 1.51 6.56 -2.39 -0.02 1.49 16 8 C 0.06 2.00 4.84 86.31 0.42 2.41 16 9 N -0.68 -28.62 5.65 -517.90 -2.93 -31.55 16 10 C 0.17 8.59 4.51 85.56 0.39 8.97 16 11 C -0.53 -31.38 9.87 25.60 0.25 -31.13 16 12 H 0.04 2.41 8.06 -2.91 -0.02 2.39 16 13 C 0.01 0.47 5.47 84.66 0.46 0.94 16 14 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16 15 Si 0.95 44.77 27.47 68.60 1.88 46.65 16 16 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 18 H -0.25 -11.14 6.54 99.48 0.65 -10.49 16 19 C -0.10 -2.83 5.09 30.35 0.15 -2.68 16 20 C 0.08 2.09 4.93 88.07 0.43 2.52 16 21 H 0.07 1.14 8.04 -2.39 -0.02 1.13 16 22 H 0.08 1.13 7.84 -2.38 -0.02 1.11 16 23 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 24 H 0.03 0.68 6.66 -2.39 -0.02 0.67 16 25 H 0.09 1.30 7.62 -2.39 -0.02 1.29 16 26 H 0.07 1.36 7.26 -2.39 -0.02 1.35 16 27 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.06 1.33 7.98 -2.39 -0.02 1.31 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.02 0.67 8.12 -2.39 -0.02 0.65 16 31 H 0.06 2.11 8.14 -2.39 -0.02 2.10 16 32 H 0.33 13.85 8.71 -89.69 -0.78 13.07 16 33 H -0.02 -0.76 7.20 -2.39 -0.02 -0.78 16 34 H 0.02 1.13 7.57 -2.39 -0.02 1.11 16 35 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 36 H 0.07 1.85 7.11 -2.39 -0.02 1.83 16 37 H 0.06 2.18 7.10 -2.39 -0.02 2.16 16 38 H 0.07 1.69 7.93 -2.38 -0.02 1.67 16 39 H 0.01 0.15 7.54 -2.39 -0.02 0.13 16 Total: -1.00 -65.37 296.24 -0.44 -65.81 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.16 Total: 16.55 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: 4.08 Total: -21.55 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -6.57 Total: -107.46 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.65 kcal Total: -65.37 -0.44 -65.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260013852.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.833 kcal (2) G-P(sol) polarization free energy of solvation -65.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds