Wall clock time and date at job start Mon Mar 30 2020 03:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.44278 * 110.99923 * 2 1 4 4 C 1.54061 * 111.97663 * 219.31053 * 3 2 1 5 5 C 1.54294 * 112.28702 * 318.91763 * 4 3 2 6 6 C 1.50464 * 113.03756 * 318.29493 * 5 4 3 7 7 H 1.09003 * 109.67459 * 332.28514 * 6 5 4 8 8 C 1.52993 * 109.57478 * 211.96493 * 6 5 4 9 9 N 1.46910 * 109.47162 * 175.62272 * 8 6 5 10 10 C 1.46895 * 110.99769 * 179.97438 * 9 8 6 11 11 C 1.50702 * 109.46770 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72214 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 C 1.54512 * 108.85959 * 92.15027 * 6 5 4 20 20 C 1.45860 * 111.58970 * 282.83057 * 19 6 5 21 21 H 1.09002 * 109.47007 * 298.02834 * 1 2 3 22 22 H 1.09000 * 109.46795 * 58.02803 * 1 2 3 23 23 H 1.08997 * 109.46953 * 178.02781 * 1 2 3 24 24 H 1.08996 * 108.97965 * 339.95642 * 3 2 1 25 25 H 1.09002 * 108.97925 * 98.75104 * 3 2 1 26 26 H 1.09005 * 108.91946 * 79.63698 * 4 3 2 27 27 H 1.08996 * 108.91989 * 198.28364 * 4 3 2 28 28 H 1.09004 * 108.77255 * 197.38112 * 5 4 3 29 29 H 1.08997 * 108.77082 * 79.21508 * 5 4 3 30 30 H 1.09005 * 109.47376 * 55.63050 * 8 6 5 31 31 H 1.08991 * 109.47342 * 295.62586 * 8 6 5 32 32 H 1.00901 * 110.99285 * 56.05147 * 9 8 6 33 33 H 1.09004 * 109.47258 * 60.00516 * 10 9 8 34 34 H 1.08994 * 109.47601 * 300.00108 * 10 9 8 35 35 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 36 36 H 1.09003 * 109.05400 * 43.36723 * 19 6 5 37 37 H 1.08995 * 109.05946 * 162.28131 * 19 6 5 38 38 H 1.08996 * 108.79646 * 182.20973 * 20 19 6 39 39 H 1.09002 * 108.79073 * 300.54779 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9860 1.3470 0.0000 4 6 3.2246 1.4891 -0.9051 5 6 4.1832 0.2868 -0.7781 6 6 4.3623 -0.1760 0.6424 7 1 4.2070 0.6608 1.3233 8 6 5.7761 -0.7310 0.8262 9 7 5.9836 -1.0851 2.2369 10 6 7.3334 -1.6233 2.4514 11 6 7.5086 -1.9749 3.9063 12 1 6.6980 -1.8150 4.6020 13 6 8.7015 -2.5067 4.3484 14 7 9.6883 -2.7018 3.5012 15 14 8.9158 -2.9496 6.1503 16 1 8.4942 -4.3569 6.3677 17 1 10.3429 -2.7960 6.5314 18 1 8.0809 -2.0483 6.9844 19 6 3.3282 -1.2847 0.9406 20 6 1.9987 -0.7306 1.1706 21 1 -0.3633 0.4829 0.9072 22 1 -0.3633 0.5442 -0.8718 23 1 -0.3633 -1.0270 -0.0354 24 1 1.2091 2.0249 -0.3533 25 1 2.2595 1.6217 1.0188 26 1 2.8973 1.5721 -1.9415 27 1 3.7608 2.3974 -0.6303 28 1 5.1561 0.5698 -1.1800 29 1 3.7893 -0.5399 -1.3693 30 1 6.5043 0.0242 0.5304 31 1 5.9014 -1.6189 0.2066 32 1 5.2806 -1.7360 2.5533 33 1 8.0727 -0.8746 2.1667 34 1 7.4691 -2.5175 1.8431 35 1 10.5277 -3.0756 3.8123 36 1 3.2866 -1.9697 0.0937 37 1 3.6425 -1.8354 1.8271 38 1 1.3163 -1.5448 1.4145 39 1 2.0452 -0.0464 2.0179 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260013858.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:30 Heat of formation + Delta-G solvation = -8.528999 kcal Electronic energy + Delta-G solvation = -16058.585516 eV Core-core repulsion = 13614.365127 eV Total energy + Delta-G solvation = -2444.220390 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.38652 -36.09347 -33.82203 -32.52891 -31.82100 -28.69556 -26.82580 -25.01111 -24.31348 -22.46997 -21.29287 -20.17101 -19.24254 -16.49373 -15.78353 -15.58921 -15.05608 -14.74203 -14.49715 -14.00276 -13.53232 -13.38926 -13.07261 -12.75720 -12.37244 -12.23802 -11.77275 -11.55744 -11.33726 -11.16550 -10.95407 -10.78093 -10.70170 -10.51150 -10.31747 -10.12555 -9.98703 -9.70304 -9.09974 -8.45086 -8.37034 -7.20683 -6.00120 -4.01926 3.33407 3.39299 3.44061 3.88172 4.45496 4.80384 4.85990 5.00579 5.14897 5.22323 5.34068 5.35390 5.35712 5.43613 5.57724 5.60808 5.70155 5.72786 5.77465 5.86689 6.01984 6.16043 6.27865 6.31184 6.35252 6.38231 6.48970 6.66755 6.79743 7.03990 7.12258 7.32732 7.48230 7.82624 8.17933 8.46680 8.68344 9.07737 9.62862 11.11094 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.047722 B = 0.004912 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.592256 B = 5698.833009 C = 6060.168407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.535 5.535 3 C 0.053 3.947 4 C -0.106 4.106 5 C -0.104 4.104 6 C -0.079 4.079 7 H 0.072 0.928 8 C 0.065 3.935 9 N -0.691 5.691 10 C 0.193 3.807 11 C -0.513 4.513 12 H 0.061 0.939 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.899 3.101 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.114 4.114 20 C 0.059 3.941 21 H 0.022 0.978 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.057 0.943 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.017 0.983 32 H 0.326 0.674 33 H 0.027 0.973 34 H -0.015 1.015 35 H 0.261 0.739 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.284 5.902 -8.024 19.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.259 5.259 3 C -0.076 4.076 4 C -0.145 4.145 5 C -0.142 4.142 6 C -0.098 4.098 7 H 0.091 0.909 8 C -0.065 4.065 9 N -0.322 5.322 10 C 0.066 3.934 11 C -0.552 4.552 12 H 0.080 0.920 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.726 3.274 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.152 4.152 20 C -0.068 4.068 21 H 0.041 0.959 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.035 0.965 32 H 0.144 0.856 33 H 0.045 0.955 34 H 0.003 0.997 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -15.756 6.236 -8.278 18.858 hybrid contribution -0.075 -0.764 1.242 1.460 sum -15.831 5.472 -7.036 18.168 Atomic orbital electron populations 1.22445 0.87622 1.01953 1.00135 1.61621 1.07018 1.14952 1.42347 1.21945 0.96989 0.89228 0.99397 1.21902 0.95189 0.98184 0.99203 1.21229 0.98192 0.97904 0.96869 1.20930 0.94501 0.97883 0.96491 0.90939 1.21964 0.95008 0.98526 0.91046 1.60736 1.06840 1.48906 1.15739 1.19546 0.84462 0.93069 0.96338 1.21205 0.99207 1.40869 0.93899 0.92039 1.24997 0.95879 0.95826 0.97917 1.69970 1.04251 1.45159 1.34428 0.86490 0.77230 0.78661 0.84977 1.20746 1.21246 1.19790 1.20662 0.93795 0.98428 1.02275 1.21035 0.97177 0.97944 0.90597 0.95898 0.91633 0.91511 0.92400 0.93913 0.92416 0.92296 0.92723 0.91903 0.91964 0.96526 0.85630 0.95513 0.99707 0.92951 0.91788 0.91033 0.91879 0.94372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.19 60.07 0.55 0.79 16 2 N -0.54 -6.08 4.48 -247.87 -1.11 -7.20 16 3 C 0.05 0.58 5.18 -4.67 -0.02 0.56 16 4 C -0.11 -1.19 6.15 -25.50 -0.16 -1.35 16 5 C -0.10 -1.35 4.98 -27.32 -0.14 -1.49 16 6 C -0.08 -1.17 2.06 -91.10 -0.19 -1.36 16 7 H 0.07 1.14 7.16 -51.93 -0.37 0.77 16 8 C 0.06 1.19 4.98 -3.82 -0.02 1.17 16 9 N -0.69 -15.25 6.49 -115.06 -0.75 -16.00 16 10 C 0.19 5.21 5.44 -4.98 -0.03 5.18 16 11 C -0.51 -14.87 9.32 -34.44 -0.32 -15.19 16 12 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 13 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 15 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 C -0.11 -1.56 4.89 -29.32 -0.14 -1.70 16 20 C 0.06 0.72 4.96 -6.70 -0.03 0.68 16 21 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 22 H 0.06 0.53 8.01 -51.93 -0.42 0.11 16 23 H 0.07 0.57 8.05 -51.93 -0.42 0.15 16 24 H 0.06 0.55 7.49 -51.93 -0.39 0.16 16 25 H 0.04 0.50 6.50 -51.93 -0.34 0.16 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.71 7.61 -51.93 -0.40 0.32 16 29 H 0.06 0.84 7.38 -51.93 -0.38 0.46 16 30 H 0.06 1.18 7.98 -51.93 -0.41 0.76 16 31 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.33 6.83 6.73 -39.29 -0.26 6.57 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 34 H -0.01 -0.43 8.14 -51.93 -0.42 -0.85 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.06 0.89 7.59 -51.93 -0.39 0.49 16 37 H 0.07 1.05 6.11 -51.93 -0.32 0.73 16 38 H 0.06 0.70 7.74 -51.93 -0.40 0.29 16 39 H 0.04 0.48 7.23 -51.93 -0.38 0.10 16 LS Contribution 298.30 15.07 4.50 4.50 Total: -1.00 -30.26 298.30 -9.20 -39.46 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.96 Total: 0.08 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -0.59 Total: -11.19 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -1.12 Total: -49.79 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.26 -9.20 -39.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260013858.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.931 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds