Wall clock time and date at job start Mon Mar 30 2020 03:21:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46901 * 1
3 3 C 1.44278 * 110.99923 * 2 1
4 4 C 1.54061 * 111.97663 * 219.31053 * 3 2 1
5 5 C 1.54294 * 112.28702 * 318.91763 * 4 3 2
6 6 C 1.50464 * 113.03756 * 318.29493 * 5 4 3
7 7 H 1.09003 * 109.67459 * 332.28514 * 6 5 4
8 8 C 1.52993 * 109.57478 * 211.96493 * 6 5 4
9 9 N 1.46910 * 109.47162 * 175.62272 * 8 6 5
10 10 C 1.46895 * 110.99769 * 179.97438 * 9 8 6
11 11 C 1.50702 * 109.46770 * 180.02562 * 10 9 8
12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9
13 13 C 1.37884 * 119.99942 * 179.72214 * 11 10 9
14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10
15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10
16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11
17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11
18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11
19 19 C 1.54512 * 108.85959 * 92.15027 * 6 5 4
20 20 C 1.45860 * 111.58970 * 282.83057 * 19 6 5
21 21 H 1.09002 * 109.47007 * 298.02834 * 1 2 3
22 22 H 1.09000 * 109.46795 * 58.02803 * 1 2 3
23 23 H 1.08997 * 109.46953 * 178.02781 * 1 2 3
24 24 H 1.08996 * 108.97965 * 339.95642 * 3 2 1
25 25 H 1.09002 * 108.97925 * 98.75104 * 3 2 1
26 26 H 1.09005 * 108.91946 * 79.63698 * 4 3 2
27 27 H 1.08996 * 108.91989 * 198.28364 * 4 3 2
28 28 H 1.09004 * 108.77255 * 197.38112 * 5 4 3
29 29 H 1.08997 * 108.77082 * 79.21508 * 5 4 3
30 30 H 1.09005 * 109.47376 * 55.63050 * 8 6 5
31 31 H 1.08991 * 109.47342 * 295.62586 * 8 6 5
32 32 H 1.00901 * 110.99285 * 56.05147 * 9 8 6
33 33 H 1.09004 * 109.47258 * 60.00516 * 10 9 8
34 34 H 1.08994 * 109.47601 * 300.00108 * 10 9 8
35 35 H 0.97005 * 119.99651 * 179.97438 * 14 13 11
36 36 H 1.09003 * 109.05400 * 43.36723 * 19 6 5
37 37 H 1.08995 * 109.05946 * 162.28131 * 19 6 5
38 38 H 1.08996 * 108.79646 * 182.20973 * 20 19 6
39 39 H 1.09002 * 108.79073 * 300.54779 * 20 19 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9860 1.3470 0.0000
4 6 3.2246 1.4891 -0.9051
5 6 4.1832 0.2868 -0.7781
6 6 4.3623 -0.1760 0.6424
7 1 4.2070 0.6608 1.3233
8 6 5.7761 -0.7310 0.8262
9 7 5.9836 -1.0851 2.2369
10 6 7.3334 -1.6233 2.4514
11 6 7.5086 -1.9749 3.9063
12 1 6.6980 -1.8150 4.6020
13 6 8.7015 -2.5067 4.3484
14 7 9.6883 -2.7018 3.5012
15 14 8.9158 -2.9496 6.1503
16 1 8.4942 -4.3569 6.3677
17 1 10.3429 -2.7960 6.5314
18 1 8.0809 -2.0483 6.9844
19 6 3.3282 -1.2847 0.9406
20 6 1.9987 -0.7306 1.1706
21 1 -0.3633 0.4829 0.9072
22 1 -0.3633 0.5442 -0.8718
23 1 -0.3633 -1.0270 -0.0354
24 1 1.2091 2.0249 -0.3533
25 1 2.2595 1.6217 1.0188
26 1 2.8973 1.5721 -1.9415
27 1 3.7608 2.3974 -0.6303
28 1 5.1561 0.5698 -1.1800
29 1 3.7893 -0.5399 -1.3693
30 1 6.5043 0.0242 0.5304
31 1 5.9014 -1.6189 0.2066
32 1 5.2806 -1.7360 2.5533
33 1 8.0727 -0.8746 2.1667
34 1 7.4691 -2.5175 1.8431
35 1 10.5277 -3.0756 3.8123
36 1 3.2866 -1.9697 0.0937
37 1 3.6425 -1.8354 1.8271
38 1 1.3163 -1.5448 1.4145
39 1 2.0452 -0.0464 2.0179
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260013858.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:21:30
Heat of formation + Delta-G solvation = -8.528999 kcal
Electronic energy + Delta-G solvation = -16058.585516 eV
Core-core repulsion = 13614.365127 eV
Total energy + Delta-G solvation = -2444.220390 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-39.38652 -36.09347 -33.82203 -32.52891 -31.82100 -28.69556 -26.82580 -25.01111
-24.31348 -22.46997 -21.29287 -20.17101 -19.24254 -16.49373 -15.78353 -15.58921
-15.05608 -14.74203 -14.49715 -14.00276 -13.53232 -13.38926 -13.07261 -12.75720
-12.37244 -12.23802 -11.77275 -11.55744 -11.33726 -11.16550 -10.95407 -10.78093
-10.70170 -10.51150 -10.31747 -10.12555 -9.98703 -9.70304 -9.09974 -8.45086
-8.37034 -7.20683 -6.00120 -4.01926 3.33407 3.39299 3.44061 3.88172
4.45496 4.80384 4.85990 5.00579 5.14897 5.22323 5.34068 5.35390
5.35712 5.43613 5.57724 5.60808 5.70155 5.72786 5.77465 5.86689
6.01984 6.16043 6.27865 6.31184 6.35252 6.38231 6.48970 6.66755
6.79743 7.03990 7.12258 7.32732 7.48230 7.82624 8.17933 8.46680
8.68344 9.07737 9.62862 11.11094
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.047722 B = 0.004912 C = 0.004619
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 586.592256 B = 5698.833009 C = 6060.168407
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 N -0.535 5.535
3 C 0.053 3.947
4 C -0.106 4.106
5 C -0.104 4.104
6 C -0.079 4.079
7 H 0.072 0.928
8 C 0.065 3.935
9 N -0.691 5.691
10 C 0.193 3.807
11 C -0.513 4.513
12 H 0.061 0.939
13 C 0.055 3.945
14 N -0.899 5.899
15 Si 0.899 3.101
16 H -0.281 1.281
17 H -0.287 1.287
18 H -0.273 1.273
19 C -0.114 4.114
20 C 0.059 3.941
21 H 0.022 0.978
22 H 0.065 0.935
23 H 0.066 0.934
24 H 0.057 0.943
25 H 0.043 0.957
26 H 0.057 0.943
27 H 0.058 0.942
28 H 0.054 0.946
29 H 0.062 0.938
30 H 0.062 0.938
31 H 0.017 0.983
32 H 0.326 0.674
33 H 0.027 0.973
34 H -0.015 1.015
35 H 0.261 0.739
36 H 0.063 0.937
37 H 0.071 0.929
38 H 0.063 0.937
39 H 0.038 0.962
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.284 5.902 -8.024 19.089
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 N -0.259 5.259
3 C -0.076 4.076
4 C -0.145 4.145
5 C -0.142 4.142
6 C -0.098 4.098
7 H 0.091 0.909
8 C -0.065 4.065
9 N -0.322 5.322
10 C 0.066 3.934
11 C -0.552 4.552
12 H 0.080 0.920
13 C -0.146 4.146
14 N -0.538 5.538
15 Si 0.726 3.274
16 H -0.207 1.207
17 H -0.212 1.212
18 H -0.198 1.198
19 C -0.152 4.152
20 C -0.068 4.068
21 H 0.041 0.959
22 H 0.084 0.916
23 H 0.085 0.915
24 H 0.076 0.924
25 H 0.061 0.939
26 H 0.076 0.924
27 H 0.077 0.923
28 H 0.073 0.927
29 H 0.081 0.919
30 H 0.080 0.920
31 H 0.035 0.965
32 H 0.144 0.856
33 H 0.045 0.955
34 H 0.003 0.997
35 H 0.070 0.930
36 H 0.082 0.918
37 H 0.090 0.910
38 H 0.081 0.919
39 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges -15.756 6.236 -8.278 18.858
hybrid contribution -0.075 -0.764 1.242 1.460
sum -15.831 5.472 -7.036 18.168
Atomic orbital electron populations
1.22445 0.87622 1.01953 1.00135 1.61621 1.07018 1.14952 1.42347
1.21945 0.96989 0.89228 0.99397 1.21902 0.95189 0.98184 0.99203
1.21229 0.98192 0.97904 0.96869 1.20930 0.94501 0.97883 0.96491
0.90939 1.21964 0.95008 0.98526 0.91046 1.60736 1.06840 1.48906
1.15739 1.19546 0.84462 0.93069 0.96338 1.21205 0.99207 1.40869
0.93899 0.92039 1.24997 0.95879 0.95826 0.97917 1.69970 1.04251
1.45159 1.34428 0.86490 0.77230 0.78661 0.84977 1.20746 1.21246
1.19790 1.20662 0.93795 0.98428 1.02275 1.21035 0.97177 0.97944
0.90597 0.95898 0.91633 0.91511 0.92400 0.93913 0.92416 0.92296
0.92723 0.91903 0.91964 0.96526 0.85630 0.95513 0.99707 0.92951
0.91788 0.91033 0.91879 0.94372
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.24 9.19 60.07 0.55 0.79 16
2 N -0.54 -6.08 4.48 -247.87 -1.11 -7.20 16
3 C 0.05 0.58 5.18 -4.67 -0.02 0.56 16
4 C -0.11 -1.19 6.15 -25.50 -0.16 -1.35 16
5 C -0.10 -1.35 4.98 -27.32 -0.14 -1.49 16
6 C -0.08 -1.17 2.06 -91.10 -0.19 -1.36 16
7 H 0.07 1.14 7.16 -51.93 -0.37 0.77 16
8 C 0.06 1.19 4.98 -3.82 -0.02 1.17 16
9 N -0.69 -15.25 6.49 -115.06 -0.75 -16.00 16
10 C 0.19 5.21 5.44 -4.98 -0.03 5.18 16
11 C -0.51 -14.87 9.32 -34.44 -0.32 -15.19 16
12 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16
13 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16
14 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16
15 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16
16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16
19 C -0.11 -1.56 4.89 -29.32 -0.14 -1.70 16
20 C 0.06 0.72 4.96 -6.70 -0.03 0.68 16
21 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16
22 H 0.06 0.53 8.01 -51.93 -0.42 0.11 16
23 H 0.07 0.57 8.05 -51.93 -0.42 0.15 16
24 H 0.06 0.55 7.49 -51.93 -0.39 0.16 16
25 H 0.04 0.50 6.50 -51.93 -0.34 0.16 16
26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
28 H 0.05 0.71 7.61 -51.93 -0.40 0.32 16
29 H 0.06 0.84 7.38 -51.93 -0.38 0.46 16
30 H 0.06 1.18 7.98 -51.93 -0.41 0.76 16
31 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16
32 H 0.33 6.83 6.73 -39.29 -0.26 6.57 16
33 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16
34 H -0.01 -0.43 8.14 -51.93 -0.42 -0.85 16
35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
36 H 0.06 0.89 7.59 -51.93 -0.39 0.49 16
37 H 0.07 1.05 6.11 -51.93 -0.32 0.73 16
38 H 0.06 0.70 7.74 -51.93 -0.40 0.29 16
39 H 0.04 0.48 7.23 -51.93 -0.38 0.10 16
LS Contribution 298.30 15.07 4.50 4.50
Total: -1.00 -30.26 298.30 -9.20 -39.46
By element:
Atomic # 1 Polarization: 7.04 SS G_CDS: -6.96 Total: 0.08 kcal
Atomic # 6 Polarization: -10.59 SS G_CDS: -0.59 Total: -11.19 kcal
Atomic # 7 Polarization: -48.67 SS G_CDS: -1.12 Total: -49.79 kcal
Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal
Total LS contribution 4.50 Total: 4.50 kcal
Total: -30.26 -9.20 -39.46 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260013858.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.931 kcal
(2) G-P(sol) polarization free energy of solvation -30.258 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.673 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.460 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.529 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds