Wall clock time and date at job start Mon Mar 30 2020 03:21:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46901 * 1
3 3 C 1.44278 * 110.99923 * 2 1
4 4 C 1.54061 * 111.97663 * 219.31053 * 3 2 1
5 5 C 1.54294 * 112.28702 * 318.91763 * 4 3 2
6 6 C 1.50464 * 113.03756 * 318.29493 * 5 4 3
7 7 H 1.09003 * 109.67459 * 332.28514 * 6 5 4
8 8 C 1.52993 * 109.57478 * 211.96493 * 6 5 4
9 9 N 1.46910 * 109.47162 * 175.62272 * 8 6 5
10 10 C 1.46895 * 110.99769 * 179.97438 * 9 8 6
11 11 C 1.50702 * 109.46770 * 180.02562 * 10 9 8
12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9
13 13 C 1.37884 * 119.99942 * 179.72214 * 11 10 9
14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10
15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10
16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11
17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11
18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11
19 19 C 1.54512 * 108.85959 * 92.15027 * 6 5 4
20 20 C 1.45860 * 111.58970 * 282.83057 * 19 6 5
21 21 H 1.09002 * 109.47007 * 298.02834 * 1 2 3
22 22 H 1.09000 * 109.46795 * 58.02803 * 1 2 3
23 23 H 1.08997 * 109.46953 * 178.02781 * 1 2 3
24 24 H 1.08996 * 108.97965 * 339.95642 * 3 2 1
25 25 H 1.09002 * 108.97925 * 98.75104 * 3 2 1
26 26 H 1.09005 * 108.91946 * 79.63698 * 4 3 2
27 27 H 1.08996 * 108.91989 * 198.28364 * 4 3 2
28 28 H 1.09004 * 108.77255 * 197.38112 * 5 4 3
29 29 H 1.08997 * 108.77082 * 79.21508 * 5 4 3
30 30 H 1.09005 * 109.47376 * 55.63050 * 8 6 5
31 31 H 1.08991 * 109.47342 * 295.62586 * 8 6 5
32 32 H 1.00901 * 110.99285 * 56.05147 * 9 8 6
33 33 H 1.09004 * 109.47258 * 60.00516 * 10 9 8
34 34 H 1.08994 * 109.47601 * 300.00108 * 10 9 8
35 35 H 0.97005 * 119.99651 * 179.97438 * 14 13 11
36 36 H 1.09003 * 109.05400 * 43.36723 * 19 6 5
37 37 H 1.08995 * 109.05946 * 162.28131 * 19 6 5
38 38 H 1.08996 * 108.79646 * 182.20973 * 20 19 6
39 39 H 1.09002 * 108.79073 * 300.54779 * 20 19 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9860 1.3470 0.0000
4 6 3.2246 1.4891 -0.9051
5 6 4.1832 0.2868 -0.7781
6 6 4.3623 -0.1760 0.6424
7 1 4.2070 0.6608 1.3233
8 6 5.7761 -0.7310 0.8262
9 7 5.9836 -1.0851 2.2369
10 6 7.3334 -1.6233 2.4514
11 6 7.5086 -1.9749 3.9063
12 1 6.6980 -1.8150 4.6020
13 6 8.7015 -2.5067 4.3484
14 7 9.6883 -2.7018 3.5012
15 14 8.9158 -2.9496 6.1503
16 1 8.4942 -4.3569 6.3677
17 1 10.3429 -2.7960 6.5314
18 1 8.0809 -2.0483 6.9844
19 6 3.3282 -1.2847 0.9406
20 6 1.9987 -0.7306 1.1706
21 1 -0.3633 0.4829 0.9072
22 1 -0.3633 0.5442 -0.8718
23 1 -0.3633 -1.0270 -0.0354
24 1 1.2091 2.0249 -0.3533
25 1 2.2595 1.6217 1.0188
26 1 2.8973 1.5721 -1.9415
27 1 3.7608 2.3974 -0.6303
28 1 5.1561 0.5698 -1.1800
29 1 3.7893 -0.5399 -1.3693
30 1 6.5043 0.0242 0.5304
31 1 5.9014 -1.6189 0.2066
32 1 5.2806 -1.7360 2.5533
33 1 8.0727 -0.8746 2.1667
34 1 7.4691 -2.5175 1.8431
35 1 10.5277 -3.0756 3.8123
36 1 3.2866 -1.9697 0.0937
37 1 3.6425 -1.8354 1.8271
38 1 1.3163 -1.5448 1.4145
39 1 2.0452 -0.0464 2.0179
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260013858.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:21:30
Heat of formation + Delta-G solvation = -29.267444 kcal
Electronic energy + Delta-G solvation = -16059.484803 eV
Core-core repulsion = 13614.365127 eV
Total energy + Delta-G solvation = -2445.119676 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.41972 -37.55099 -35.47613 -34.08632 -33.20688 -30.04857 -28.38464 -26.41140
-25.25841 -24.03456 -23.10049 -21.26554 -20.32875 -18.60322 -17.00359 -16.73613
-16.56382 -16.21643 -15.72368 -15.30705 -14.96210 -14.81051 -14.12026 -14.03392
-13.90545 -13.62867 -13.10786 -12.93664 -12.88199 -12.63201 -12.51460 -12.29794
-12.03031 -11.87445 -11.59379 -11.52946 -11.30859 -11.15660 -10.95450 -10.66737
-9.22865 -9.11121 -8.23073 -6.34867 1.40967 1.43128 1.55018 2.40007
3.02703 3.10077 3.55362 3.74357 3.99470 4.14386 4.23510 4.31320
4.36702 4.40481 4.50923 4.57469 4.67376 4.77814 4.87508 4.89689
4.97113 5.00295 5.05538 5.07217 5.17416 5.25868 5.26569 5.33705
5.35487 5.48237 5.56936 5.64859 6.01830 6.15961 6.29390 6.45419
6.73096 6.89358 7.36378 8.88849
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.047722 B = 0.004912 C = 0.004619
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 586.592256 B = 5698.833009 C = 6060.168407
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 N -0.545 5.545
3 C 0.052 3.948
4 C -0.103 4.103
5 C -0.100 4.100
6 C -0.067 4.067
7 H 0.065 0.935
8 C 0.066 3.934
9 N -0.688 5.688
10 C 0.206 3.794
11 C -0.537 4.537
12 H 0.065 0.935
13 C 0.000 4.000
14 N -0.935 5.935
15 Si 0.976 3.024
16 H -0.270 1.270
17 H -0.281 1.281
18 H -0.264 1.264
19 C -0.108 4.108
20 C 0.062 3.938
21 H 0.027 0.973
22 H 0.077 0.923
23 H 0.072 0.928
24 H 0.076 0.924
25 H 0.033 0.967
26 H 0.070 0.930
27 H 0.063 0.937
28 H 0.051 0.949
29 H 0.060 0.940
30 H 0.053 0.947
31 H 0.012 0.988
32 H 0.334 0.666
33 H -0.002 1.002
34 H -0.041 1.041
35 H 0.266 0.734
36 H 0.063 0.937
37 H 0.059 0.941
38 H 0.075 0.925
39 H 0.033 0.967
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.897 6.186 -7.513 20.372
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 N -0.269 5.269
3 C -0.076 4.076
4 C -0.142 4.142
5 C -0.139 4.139
6 C -0.086 4.086
7 H 0.084 0.916
8 C -0.064 4.064
9 N -0.319 5.319
10 C 0.078 3.922
11 C -0.575 4.575
12 H 0.083 0.917
13 C -0.198 4.198
14 N -0.576 5.576
15 Si 0.800 3.200
16 H -0.196 1.196
17 H -0.206 1.206
18 H -0.188 1.188
19 C -0.146 4.146
20 C -0.065 4.065
21 H 0.046 0.954
22 H 0.096 0.904
23 H 0.090 0.910
24 H 0.095 0.905
25 H 0.051 0.949
26 H 0.088 0.912
27 H 0.082 0.918
28 H 0.069 0.931
29 H 0.079 0.921
30 H 0.071 0.929
31 H 0.031 0.969
32 H 0.153 0.847
33 H 0.016 0.984
34 H -0.024 1.024
35 H 0.074 0.926
36 H 0.082 0.918
37 H 0.077 0.923
38 H 0.094 0.906
39 H 0.051 0.949
Dipole moment (debyes) X Y Z Total
from point charges -17.400 6.529 -7.781 20.148
hybrid contribution 0.422 -0.841 1.008 1.379
sum -16.979 5.688 -6.773 19.144
Atomic orbital electron populations
1.22507 0.86037 1.02667 1.00946 1.61599 1.08518 1.15049 1.41738
1.21965 0.97357 0.89494 0.98822 1.21888 0.94945 0.97202 1.00136
1.21175 0.98735 0.98799 0.95144 1.20805 0.92208 0.97818 0.97759
0.91631 1.22049 0.97434 0.98154 0.88761 1.60625 1.04707 1.48332
1.18279 1.19214 0.86395 0.91083 0.95470 1.21550 0.99767 1.41484
0.94686 0.91699 1.25995 0.95311 0.95303 1.03171 1.70103 1.04869
1.45648 1.36930 0.85289 0.77402 0.78806 0.78528 1.19550 1.20647
1.18821 1.20602 0.94513 0.97862 1.01598 1.20940 0.96352 0.98349
0.90861 0.95417 0.90399 0.90962 0.90543 0.94890 0.91176 0.91816
0.93066 0.92080 0.92858 0.96929 0.84727 0.98434 1.02368 0.92574
0.91848 0.92282 0.90648 0.94902
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.41 9.19 127.69 1.17 1.58 16
2 N -0.54 -11.19 4.48 -938.13 -4.21 -15.40 16
3 C 0.05 1.03 5.18 87.15 0.45 1.48 16
4 C -0.10 -2.12 6.15 31.39 0.19 -1.92 16
5 C -0.10 -2.51 4.98 30.21 0.15 -2.36 16
6 C -0.07 -1.97 2.06 -11.10 -0.02 -1.99 16
7 H 0.07 2.04 7.16 -2.39 -0.02 2.02 16
8 C 0.07 2.47 4.98 86.30 0.43 2.90 16
9 N -0.69 -31.01 6.49 -517.94 -3.36 -34.37 16
10 C 0.21 11.55 5.44 85.56 0.47 12.02 16
11 C -0.54 -31.47 9.32 25.60 0.24 -31.24 16
12 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16
13 C 0.00 0.02 5.46 84.66 0.46 0.48 16
14 N -0.94 -57.70 13.29 21.45 0.28 -57.42 16
15 Si 0.98 44.85 29.54 68.60 2.03 46.88 16
16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16
17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16
18 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16
19 C -0.11 -2.88 4.89 28.92 0.14 -2.74 16
20 C 0.06 1.41 4.96 83.94 0.42 1.83 16
21 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16
22 H 0.08 1.02 8.01 -2.39 -0.02 1.00 16
23 H 0.07 1.04 8.05 -2.39 -0.02 1.02 16
24 H 0.08 1.23 7.49 -2.39 -0.02 1.21 16
25 H 0.03 0.72 6.50 -2.39 -0.02 0.70 16
26 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16
27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16
28 H 0.05 1.31 7.61 -2.38 -0.02 1.29 16
29 H 0.06 1.56 7.38 -2.39 -0.02 1.54 16
30 H 0.05 2.08 7.98 -2.38 -0.02 2.06 16
31 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16
32 H 0.33 14.18 6.73 -89.69 -0.60 13.58 16
33 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16
34 H -0.04 -2.48 8.14 -2.39 -0.02 -2.50 16
35 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16
36 H 0.06 1.70 7.59 -2.39 -0.02 1.68 16
37 H 0.06 1.71 6.11 -2.39 -0.01 1.70 16
38 H 0.08 1.52 7.74 -2.39 -0.02 1.50 16
39 H 0.03 0.78 7.23 -2.39 -0.02 0.77 16
Total: -1.00 -64.60 298.30 -0.76 -65.37
By element:
Atomic # 1 Polarization: 14.51 SS G_CDS: 0.39 Total: 14.90 kcal
Atomic # 6 Polarization: -24.06 SS G_CDS: 4.10 Total: -19.97 kcal
Atomic # 7 Polarization: -99.90 SS G_CDS: -7.28 Total: -107.18 kcal
Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal
Total: -64.60 -0.76 -65.37 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260013858.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.100 kcal
(2) G-P(sol) polarization free energy of solvation -64.604 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.504 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.764 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.367 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.267 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds