Wall clock time and date at job start Mon Mar 30 2020 03:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.44278 * 110.99923 * 2 1 4 4 C 1.54061 * 111.97663 * 219.31053 * 3 2 1 5 5 C 1.54294 * 112.28702 * 318.91763 * 4 3 2 6 6 C 1.50464 * 113.03756 * 318.29493 * 5 4 3 7 7 H 1.09003 * 109.67459 * 332.28514 * 6 5 4 8 8 C 1.52993 * 109.57478 * 211.96493 * 6 5 4 9 9 N 1.46910 * 109.47162 * 175.62272 * 8 6 5 10 10 C 1.46895 * 110.99769 * 179.97438 * 9 8 6 11 11 C 1.50702 * 109.46770 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72214 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 C 1.54512 * 108.85959 * 92.15027 * 6 5 4 20 20 C 1.45860 * 111.58970 * 282.83057 * 19 6 5 21 21 H 1.09002 * 109.47007 * 298.02834 * 1 2 3 22 22 H 1.09000 * 109.46795 * 58.02803 * 1 2 3 23 23 H 1.08997 * 109.46953 * 178.02781 * 1 2 3 24 24 H 1.08996 * 108.97965 * 339.95642 * 3 2 1 25 25 H 1.09002 * 108.97925 * 98.75104 * 3 2 1 26 26 H 1.09005 * 108.91946 * 79.63698 * 4 3 2 27 27 H 1.08996 * 108.91989 * 198.28364 * 4 3 2 28 28 H 1.09004 * 108.77255 * 197.38112 * 5 4 3 29 29 H 1.08997 * 108.77082 * 79.21508 * 5 4 3 30 30 H 1.09005 * 109.47376 * 55.63050 * 8 6 5 31 31 H 1.08991 * 109.47342 * 295.62586 * 8 6 5 32 32 H 1.00901 * 110.99285 * 56.05147 * 9 8 6 33 33 H 1.09004 * 109.47258 * 60.00516 * 10 9 8 34 34 H 1.08994 * 109.47601 * 300.00108 * 10 9 8 35 35 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 36 36 H 1.09003 * 109.05400 * 43.36723 * 19 6 5 37 37 H 1.08995 * 109.05946 * 162.28131 * 19 6 5 38 38 H 1.08996 * 108.79646 * 182.20973 * 20 19 6 39 39 H 1.09002 * 108.79073 * 300.54779 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9860 1.3470 0.0000 4 6 3.2246 1.4891 -0.9051 5 6 4.1832 0.2868 -0.7781 6 6 4.3623 -0.1760 0.6424 7 1 4.2070 0.6608 1.3233 8 6 5.7761 -0.7310 0.8262 9 7 5.9836 -1.0851 2.2369 10 6 7.3334 -1.6233 2.4514 11 6 7.5086 -1.9749 3.9063 12 1 6.6980 -1.8150 4.6020 13 6 8.7015 -2.5067 4.3484 14 7 9.6883 -2.7018 3.5012 15 14 8.9158 -2.9496 6.1503 16 1 8.4942 -4.3569 6.3677 17 1 10.3429 -2.7960 6.5314 18 1 8.0809 -2.0483 6.9844 19 6 3.3282 -1.2847 0.9406 20 6 1.9987 -0.7306 1.1706 21 1 -0.3633 0.4829 0.9072 22 1 -0.3633 0.5442 -0.8718 23 1 -0.3633 -1.0270 -0.0354 24 1 1.2091 2.0249 -0.3533 25 1 2.2595 1.6217 1.0188 26 1 2.8973 1.5721 -1.9415 27 1 3.7608 2.3974 -0.6303 28 1 5.1561 0.5698 -1.1800 29 1 3.7893 -0.5399 -1.3693 30 1 6.5043 0.0242 0.5304 31 1 5.9014 -1.6189 0.2066 32 1 5.2806 -1.7360 2.5533 33 1 8.0727 -0.8746 2.1667 34 1 7.4691 -2.5175 1.8431 35 1 10.5277 -3.0756 3.8123 36 1 3.2866 -1.9697 0.0937 37 1 3.6425 -1.8354 1.8271 38 1 1.3163 -1.5448 1.4145 39 1 2.0452 -0.0464 2.0179 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260013858.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:30 Heat of formation + Delta-G solvation = -29.267444 kcal Electronic energy + Delta-G solvation = -16059.484803 eV Core-core repulsion = 13614.365127 eV Total energy + Delta-G solvation = -2445.119676 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.41972 -37.55099 -35.47613 -34.08632 -33.20688 -30.04857 -28.38464 -26.41140 -25.25841 -24.03456 -23.10049 -21.26554 -20.32875 -18.60322 -17.00359 -16.73613 -16.56382 -16.21643 -15.72368 -15.30705 -14.96210 -14.81051 -14.12026 -14.03392 -13.90545 -13.62867 -13.10786 -12.93664 -12.88199 -12.63201 -12.51460 -12.29794 -12.03031 -11.87445 -11.59379 -11.52946 -11.30859 -11.15660 -10.95450 -10.66737 -9.22865 -9.11121 -8.23073 -6.34867 1.40967 1.43128 1.55018 2.40007 3.02703 3.10077 3.55362 3.74357 3.99470 4.14386 4.23510 4.31320 4.36702 4.40481 4.50923 4.57469 4.67376 4.77814 4.87508 4.89689 4.97113 5.00295 5.05538 5.07217 5.17416 5.25868 5.26569 5.33705 5.35487 5.48237 5.56936 5.64859 6.01830 6.15961 6.29390 6.45419 6.73096 6.89358 7.36378 8.88849 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.047722 B = 0.004912 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.592256 B = 5698.833009 C = 6060.168407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.052 3.948 4 C -0.103 4.103 5 C -0.100 4.100 6 C -0.067 4.067 7 H 0.065 0.935 8 C 0.066 3.934 9 N -0.688 5.688 10 C 0.206 3.794 11 C -0.537 4.537 12 H 0.065 0.935 13 C 0.000 4.000 14 N -0.935 5.935 15 Si 0.976 3.024 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.264 1.264 19 C -0.108 4.108 20 C 0.062 3.938 21 H 0.027 0.973 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.033 0.967 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.012 0.988 32 H 0.334 0.666 33 H -0.002 1.002 34 H -0.041 1.041 35 H 0.266 0.734 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.897 6.186 -7.513 20.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.269 5.269 3 C -0.076 4.076 4 C -0.142 4.142 5 C -0.139 4.139 6 C -0.086 4.086 7 H 0.084 0.916 8 C -0.064 4.064 9 N -0.319 5.319 10 C 0.078 3.922 11 C -0.575 4.575 12 H 0.083 0.917 13 C -0.198 4.198 14 N -0.576 5.576 15 Si 0.800 3.200 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.188 1.188 19 C -0.146 4.146 20 C -0.065 4.065 21 H 0.046 0.954 22 H 0.096 0.904 23 H 0.090 0.910 24 H 0.095 0.905 25 H 0.051 0.949 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.031 0.969 32 H 0.153 0.847 33 H 0.016 0.984 34 H -0.024 1.024 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -17.400 6.529 -7.781 20.148 hybrid contribution 0.422 -0.841 1.008 1.379 sum -16.979 5.688 -6.773 19.144 Atomic orbital electron populations 1.22507 0.86037 1.02667 1.00946 1.61599 1.08518 1.15049 1.41738 1.21965 0.97357 0.89494 0.98822 1.21888 0.94945 0.97202 1.00136 1.21175 0.98735 0.98799 0.95144 1.20805 0.92208 0.97818 0.97759 0.91631 1.22049 0.97434 0.98154 0.88761 1.60625 1.04707 1.48332 1.18279 1.19214 0.86395 0.91083 0.95470 1.21550 0.99767 1.41484 0.94686 0.91699 1.25995 0.95311 0.95303 1.03171 1.70103 1.04869 1.45648 1.36930 0.85289 0.77402 0.78806 0.78528 1.19550 1.20647 1.18821 1.20602 0.94513 0.97862 1.01598 1.20940 0.96352 0.98349 0.90861 0.95417 0.90399 0.90962 0.90543 0.94890 0.91176 0.91816 0.93066 0.92080 0.92858 0.96929 0.84727 0.98434 1.02368 0.92574 0.91848 0.92282 0.90648 0.94902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.19 127.69 1.17 1.58 16 2 N -0.54 -11.19 4.48 -938.13 -4.21 -15.40 16 3 C 0.05 1.03 5.18 87.15 0.45 1.48 16 4 C -0.10 -2.12 6.15 31.39 0.19 -1.92 16 5 C -0.10 -2.51 4.98 30.21 0.15 -2.36 16 6 C -0.07 -1.97 2.06 -11.10 -0.02 -1.99 16 7 H 0.07 2.04 7.16 -2.39 -0.02 2.02 16 8 C 0.07 2.47 4.98 86.30 0.43 2.90 16 9 N -0.69 -31.01 6.49 -517.94 -3.36 -34.37 16 10 C 0.21 11.55 5.44 85.56 0.47 12.02 16 11 C -0.54 -31.47 9.32 25.60 0.24 -31.24 16 12 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 13 C 0.00 0.02 5.46 84.66 0.46 0.48 16 14 N -0.94 -57.70 13.29 21.45 0.28 -57.42 16 15 Si 0.98 44.85 29.54 68.60 2.03 46.88 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 19 C -0.11 -2.88 4.89 28.92 0.14 -2.74 16 20 C 0.06 1.41 4.96 83.94 0.42 1.83 16 21 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 22 H 0.08 1.02 8.01 -2.39 -0.02 1.00 16 23 H 0.07 1.04 8.05 -2.39 -0.02 1.02 16 24 H 0.08 1.23 7.49 -2.39 -0.02 1.21 16 25 H 0.03 0.72 6.50 -2.39 -0.02 0.70 16 26 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.05 1.31 7.61 -2.38 -0.02 1.29 16 29 H 0.06 1.56 7.38 -2.39 -0.02 1.54 16 30 H 0.05 2.08 7.98 -2.38 -0.02 2.06 16 31 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.33 14.18 6.73 -89.69 -0.60 13.58 16 33 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 34 H -0.04 -2.48 8.14 -2.39 -0.02 -2.50 16 35 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 36 H 0.06 1.70 7.59 -2.39 -0.02 1.68 16 37 H 0.06 1.71 6.11 -2.39 -0.01 1.70 16 38 H 0.08 1.52 7.74 -2.39 -0.02 1.50 16 39 H 0.03 0.78 7.23 -2.39 -0.02 0.77 16 Total: -1.00 -64.60 298.30 -0.76 -65.37 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.39 Total: 14.90 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: 4.10 Total: -19.97 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -7.28 Total: -107.18 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -64.60 -0.76 -65.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260013858.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.100 kcal (2) G-P(sol) polarization free energy of solvation -64.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds