Wall clock time and date at job start Mon Mar 30 2020 02:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46906 * 109.47061 * 2 1 4 4 C 1.46896 * 110.99831 * 287.47309 * 3 2 1 5 5 C 1.53006 * 109.47062 * 79.62808 * 4 3 2 6 6 C 1.46897 * 110.99727 * 163.51905 * 3 2 1 7 7 H 1.08999 * 109.50103 * 309.99957 * 6 3 2 8 8 C 1.53040 * 109.49696 * 189.93153 * 6 3 2 9 9 C 1.53038 * 109.53872 * 178.68724 * 8 6 3 10 10 C 1.53194 * 109.31259 * 61.36630 * 9 8 6 11 11 N 1.46919 * 108.77624 * 305.36533 * 10 9 8 12 12 C 1.36940 * 120.63081 * 233.60973 * 11 10 9 13 13 H 1.07999 * 120.00072 * 150.27641 * 12 11 10 14 14 C 1.38810 * 120.00290 * 330.28233 * 12 11 10 15 15 N 1.31629 * 119.99673 * 340.76507 * 14 12 11 16 16 Si 1.86795 * 120.00551 * 160.76259 * 14 12 11 17 17 H 1.48505 * 109.46974 * 60.00210 * 16 14 12 18 18 H 1.48501 * 109.47243 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47211 * 300.00373 * 16 14 12 20 20 C 1.46932 * 118.76676 * 53.58809 * 11 10 9 21 21 H 1.08996 * 109.46713 * 84.56920 * 1 2 3 22 22 H 1.08995 * 109.47125 * 204.57180 * 1 2 3 23 23 H 1.09004 * 109.46884 * 324.57619 * 1 2 3 24 24 H 1.08991 * 109.47402 * 239.99561 * 2 1 3 25 25 H 1.09008 * 109.46747 * 119.99680 * 2 1 3 26 26 H 1.09000 * 109.46958 * 199.62330 * 4 3 2 27 27 H 1.09000 * 109.47281 * 319.62679 * 4 3 2 28 28 H 1.08999 * 109.46951 * 171.38605 * 5 4 3 29 29 H 1.09003 * 109.46783 * 291.38137 * 5 4 3 30 30 H 1.09000 * 109.47244 * 51.37739 * 5 4 3 31 31 H 1.09004 * 109.45891 * 298.70793 * 8 6 3 32 32 H 1.09001 * 109.46083 * 58.68177 * 8 6 3 33 33 H 1.08996 * 109.49984 * 181.32114 * 9 8 6 34 34 H 1.09001 * 109.50029 * 301.41224 * 9 8 6 35 35 H 1.08998 * 109.58539 * 65.15702 * 10 9 8 36 36 H 1.09008 * 109.58558 * 185.57583 * 10 9 8 37 37 H 0.96996 * 120.00230 * 180.02562 * 15 14 12 38 38 H 1.09000 * 109.61786 * 186.64083 * 20 11 10 39 39 H 1.09000 * 109.56320 * 66.21227 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8069 2.0186 -1.3081 5 6 0.3498 2.4704 -1.4250 6 6 3.4350 1.4430 0.3891 7 1 3.5835 0.8748 1.3073 8 6 3.8425 2.9002 0.6185 9 6 5.3079 2.9592 1.0556 10 6 6.1912 2.3791 -0.0535 11 7 5.7131 1.0290 -0.3813 12 6 6.5711 -0.0382 -0.3643 13 1 6.2011 -1.0247 -0.1272 14 6 7.9163 0.1480 -0.6516 15 7 8.3084 1.2268 -1.2959 16 14 9.1700 -1.1322 -0.1240 17 1 8.8446 -2.4347 -0.7587 18 1 10.5264 -0.7008 -0.5477 19 1 9.1357 -1.2793 1.3533 20 6 4.2971 0.8450 -0.7273 21 1 -0.3632 0.0973 -1.0230 22 1 -0.3633 -0.9346 0.4273 23 1 -0.3633 0.8375 0.5957 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.4641 2.8829 -1.4044 27 1 2.0299 1.3026 -2.0992 28 1 0.2274 3.0731 -2.3250 29 1 -0.2982 1.5958 -1.4825 30 1 0.0822 3.0640 -0.5509 31 1 3.7166 3.4624 -0.3068 32 1 3.2141 3.3349 1.3959 33 1 5.5907 3.9952 1.2415 34 1 5.4394 2.3766 1.9675 35 1 6.1305 3.0130 -0.9381 36 1 7.2240 2.3273 0.2913 37 1 9.2484 1.3568 -1.4970 38 1 4.0799 -0.2185 -0.8268 39 1 4.0819 1.3534 -1.6672 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260120267.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:09 Heat of formation + Delta-G solvation = 21.484236 kcal Electronic energy + Delta-G solvation = -16886.054260 eV Core-core repulsion = 14443.135342 eV Total energy + Delta-G solvation = -2442.918918 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.94633 -36.03390 -32.91316 -30.89465 -30.63671 -30.32396 -27.05769 -25.23510 -22.81713 -22.45409 -21.67780 -20.33560 -18.50486 -16.74432 -15.66516 -15.08889 -14.86027 -14.43027 -13.95586 -13.47442 -13.22113 -12.80826 -12.62580 -12.49220 -12.37936 -11.92383 -11.89001 -11.40658 -11.17887 -11.13809 -10.91074 -10.71890 -10.53523 -10.25281 -10.18040 -9.96568 -9.76996 -9.55857 -9.48789 -8.51634 -7.94848 -6.58834 -5.78487 -3.21571 3.38335 3.44140 3.45833 4.23571 4.51633 5.15083 5.24444 5.36194 5.44289 5.52592 5.58272 5.64398 5.71038 5.74575 5.80503 5.93834 5.96571 6.03357 6.12558 6.16086 6.19037 6.28341 6.40209 6.46054 6.52329 6.63919 6.69961 6.76834 6.90830 6.93575 7.37177 7.51581 7.56215 7.63709 7.80851 8.46453 9.21767 9.85192 10.43780 11.29438 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.037355 B = 0.007410 C = 0.006783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.377510 B = 3777.608378 C = 4126.706631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.050 3.950 3 N -0.533 5.533 4 C 0.046 3.954 5 C -0.155 4.155 6 C 0.066 3.934 7 H 0.077 0.923 8 C -0.097 4.097 9 C -0.142 4.142 10 C 0.172 3.828 11 N -0.588 5.588 12 C -0.257 4.257 13 H 0.062 0.938 14 C 0.006 3.994 15 N -0.899 5.899 16 Si 0.900 3.100 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.283 1.283 20 C 0.123 3.877 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.065 0.935 24 H 0.035 0.965 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.035 0.965 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.017 0.983 36 H 0.079 0.921 37 H 0.254 0.746 38 H 0.048 0.952 39 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.583 1.677 2.170 12.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.079 4.079 3 N -0.257 5.257 4 C -0.082 4.082 5 C -0.213 4.213 6 C -0.043 4.043 7 H 0.095 0.905 8 C -0.135 4.135 9 C -0.182 4.182 10 C 0.047 3.953 11 N -0.311 5.311 12 C -0.387 4.387 13 H 0.080 0.920 14 C -0.193 4.193 15 N -0.543 5.543 16 Si 0.730 3.270 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.210 1.210 20 C -0.005 4.005 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.084 0.916 24 H 0.053 0.947 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.035 0.965 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -12.677 1.975 2.452 13.062 hybrid contribution 1.240 -1.097 -0.430 1.711 sum -11.437 0.878 2.022 11.647 Atomic orbital electron populations 1.22050 0.95651 1.01504 1.01378 1.22079 0.95355 0.89580 1.00856 1.62392 1.18632 1.16437 1.28227 1.22123 0.96990 0.99103 0.89963 1.22113 0.96728 1.01411 1.01014 1.22331 0.85180 0.97394 0.99439 0.90516 1.21431 0.96394 0.95339 1.00345 1.22187 0.95479 0.99555 1.00973 1.20725 0.97151 0.84639 0.92818 1.43962 1.03432 1.04892 1.78838 1.19097 0.89343 0.88972 1.41289 0.92011 1.25056 0.98486 0.97606 0.98169 1.70064 1.15401 1.28645 1.40189 0.86409 0.80711 0.81168 0.78731 1.20882 1.21592 1.20951 1.21551 0.86555 0.97969 0.94377 0.92717 0.93122 0.91589 0.94681 0.91280 0.90792 0.94660 0.93298 0.91993 0.92248 0.92819 0.92985 0.93125 0.92694 0.96503 0.90236 0.93579 0.93369 0.96476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.46 37.16 0.31 -1.38 16 2 C 0.05 0.70 5.11 -3.82 -0.02 0.68 16 3 N -0.53 -8.30 4.37 -226.49 -0.99 -9.29 16 4 C 0.05 0.68 4.21 -3.82 -0.02 0.66 16 5 C -0.16 -1.85 9.22 37.16 0.34 -1.51 16 6 C 0.07 1.21 2.32 -67.59 -0.16 1.05 16 7 H 0.08 1.49 7.86 -51.93 -0.41 1.08 16 8 C -0.10 -1.73 5.12 -26.69 -0.14 -1.87 16 9 C -0.14 -2.79 6.08 -26.61 -0.16 -2.95 16 10 C 0.17 4.19 5.31 -3.71 -0.02 4.17 16 11 N -0.59 -15.09 2.98 -172.31 -0.51 -15.61 16 12 C -0.26 -7.21 9.55 -15.06 -0.14 -7.36 16 13 H 0.06 1.71 7.90 -52.49 -0.41 1.29 16 14 C 0.01 0.17 4.84 -17.43 -0.08 0.09 16 15 N -0.90 -26.51 11.47 55.49 0.64 -25.87 16 16 Si 0.90 21.90 29.60 -169.99 -5.03 16.87 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 C 0.12 2.68 5.21 -3.70 -0.02 2.66 16 21 H 0.05 0.59 6.05 -51.93 -0.31 0.27 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.07 0.77 7.80 -51.93 -0.40 0.36 16 24 H 0.03 0.52 7.18 -51.93 -0.37 0.15 16 25 H 0.07 0.99 7.80 -51.92 -0.40 0.59 16 26 H 0.07 1.16 5.75 -51.93 -0.30 0.87 16 27 H 0.04 0.55 7.14 -51.93 -0.37 0.17 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.69 4.71 -51.93 -0.24 0.44 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.96 6.28 -51.93 -0.33 0.63 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 2.14 6.27 -51.92 -0.33 1.82 16 37 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.05 1.06 7.15 -51.93 -0.37 0.69 16 39 H 0.02 0.39 6.52 -51.93 -0.34 0.05 16 LS Contribution 288.86 15.07 4.35 4.35 Total: -1.00 -29.05 288.86 -8.33 -37.38 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -6.69 Total: -2.09 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -0.10 Total: -5.75 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.87 Total: -50.77 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.05 -8.33 -37.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260120267.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.867 kcal (2) G-P(sol) polarization free energy of solvation -29.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds